Rorug04G0302700

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
47805519 .. 47808583
3065 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0302700.1

Sequence Viewer

Length: 582 bp
ATGGCGGATATCAAAGCAGTAGTTGGTCTCTCATGGGAGCCAAAGATTCCGAATTTTTCATCGGCAACCAAACCTAGACTTGGAGTTGATGCAAAACCTCAAGAAACCAATCATCTTTGGAAACCGGCCACCCAGCTTGTGGATGGCCTCTTTGTGCCACCCAATAACCCCAAAACGCTGAACAAGTTGCAGAGGAAGCAACTCAAAGACACCACTGGCTCGAATTGGTTTGACATGCCTGCACCAACCATGACCCCAGAGTTGCAGAAAGATCTCCAATTACTCAAGTTAAGGAGTGTCATGGATCCAAAGAGACACTACAAGAAGGGGGATTCGCAAACTTCCAAGTATTTCCAGGTGGGAACAGTGGTAGAGTCCTCATCAGAATTCTTCTCAGGTAGACTAACAAAGAAGGAAAGGAAGGCAACCGTTGCAGAGGAGTTGCTTTCTGATCCTGCCCTTGCAACCTACAGGAAGCGGAAGGTTCGTGAGATTGAAGAGAAGAATCGACCGGCTGATAATGAAAAATGGAAGAATAAAGGGAAGACGTCCTATAAGCGTGCAAAGCAAAGAAGGCACTAA

Protein Analysis

193

Amino Acids

22.18

Weight (kDa)

10.08

Isoelectric Point (pI)

50.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fcf2 PF08698 69 - 161 1.7e-37 Fcf2 pre-rRNA processing
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000078)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g15240 FvH4_3g15270 FvH4_3g15280 FvH4_3g32750 FvH4_3g32760 FvH4_3g32760 FvH4_3g32880 FvH4_4g08190 FvH4_4g29160 FvH4_4g29370 FvH4_4g29400 FvH4_4g29420 FvH4_4g29420 FvH4_4g29420 FvH4_4g29430 FvH4_4g29440 FvH4_4g29450 FvH4_4g29450 FvH4_4g29450 FvH4_4g29460 FvH4_4g29461 FvH4_4g29462 FvH4_4g29463 FvH4_4g29480 FvH4_4g29481 FvH4_4g29482 FvH4_4g29483 FvH4_4g29484 FvH4_6g26720 FvH4_6g26720
malus_domestica MD00G1065200.v1.1 MD06G1145800.v1.1 MD06G1146000.v1.1 MD06G1146700.v1.1 MD13G1031000.v1.1 MD13G1033900.v1.1 MD13G1057000.v1.1 MD13G1057100.v1.1 MD13G1057200.v1.1 MD13G1057400.v1.1 MD13G1057800.v1.1 MD13G1058000.v1.1 MD13G1058100.v1.1 MD13G1058200.v1.1 MD13G1058300.v1.1 MD13G1058500.v1.1 MD13G1058600.v1.1 MD13G1058700.v1.1 MD16G1035700.v1.1 MD16G1056400.v1.1 MD16G1056600.v1.1 MD16G1056700.v1.1 MD16G1056900.v1.1 MD16G1058100.v1.1
prunus_persica Prupe.1G291100_v2.0.a1 Prupe.1G291200_v2.0.a1 Prupe.1G291500_v2.0.a1 Prupe.1G291600_v2.0.a1 Prupe.1G291700_v2.0.a1 Prupe.1G291800_v2.0.a1 Prupe.1G291900_v2.0.a1 Prupe.1G292000_v2.0.a1 Prupe.1G292100_v2.0.a1 Prupe.1G292400_v2.0.a1 Prupe.1G292500_v2.0.a1 Prupe.1G292600_v2.0.a1 Prupe.1G292700_v2.0.a1 Prupe.1G292800_v2.0.a1 Prupe.1G296000_v2.0.a1 Prupe.1G296100_v2.0.a1 Prupe.1G296300_v2.0.a1 Prupe.1G296600_v2.0.a1 Prupe.1G296900_v2.0.a1 Prupe.1G534600_v2.0.a1 Prupe.5G046700_v2.0.a1 Prupe.8G021800_v2.0.a1 Prupe.8G026400_v2.0.a1
pyrus_communis pycom06g13510 pycom06g13530 pycom06g13540 pycom06g13570 pycom06g13590 pycom06g13620 pycom13g02710 pycom13g02930 pycom13g05100 pycom13g05110 pycom13g05140 pycom13g05160 pycom13g05170 pycom13g05190 pycom13g05200 pycom13g05210 pycom13g05220 pycom16g03060 pycom16g04940 pycom16g04960 pycom16g04990 pycom16g05000 pycom16g05080
rosa_chinensis RchiOBHm_Chr1g0337981 RchiOBHm_Chr1g0337991 RchiOBHm_Chr1g0339431 RchiOBHm_Chr4g0402401 RchiOBHm_Chr4g0420571 RchiOBHm_Chr4g0420601 RchiOBHm_Chr4g0420611 RchiOBHm_Chr4g0420621 RchiOBHm_Chr4g0420631 RchiOBHm_Chr4g0437211 RchiOBHm_Chr4g0437221 RchiOBHm_Chr4g0437251 RchiOBHm_Chr4g0437431 RchiOBHm_Chr4g0437441 RchiOBHm_Chr4g0437491 RchiOBHm_Chr4g0437501 RchiOBHm_Chr4g0437511 RchiOBHm_Chr4g0437521 RchiOBHm_Chr4g0437531 RchiOBHm_Chr4g0437541 RchiOBHm_Chr4g0437551 RchiOBHm_Chr4g0437591 RchiOBHm_Chr4g0437631 RchiOBHm_Chr4g0437641 RchiOBHm_Chr4g0437671 RchiOBHm_Chr4g0437681 RchiOBHm_Chr4g0437711 RchiOBHm_Chr4g0437731 RchiOBHm_Chr4g0437741 RchiOBHm_Chr4g0437751 RchiOBHm_Chr5g0025681 RchiOBHm_Chr5g0025711 RchiOBHm_Chr5g0025731 RchiOBHm_Chr5g0059841 RchiOBHm_Chr6g0272651
rosa_laevigata RLG00000006420 RLG00000006421 RLG00000006423 RLG00000006426 RLG00000006427 RLG00000006428 RLG00000006429 RLG00000006431 RLG00000006433 RLG00000006434 RLG00000006435 RLG00000006436 RLG00000006437 RLG00000006455 RLG00000007746 RLG00000007747 RLG00000007748 RLG00000007749 RLG00000007750 RLG00000009091 RLG00000009092 RLG00000009095 RLG00000009096 RLG00000017856 RLG00000028094 RLG00000029230 RLG00000029231 RLG00000030008 RLG00000032859 RLG00000032860 RLG00000032861 RLG00000032865 RLG00000032868 RLG00000035332
rosa_multiflora Rmu_co7986016.1_g000001 Rmu_co8226539.1_g000001 Rmu_co8349613.1_g000001 Rmu_sc0000272.1_g000014 Rmu_sc0000591.1_g000003 Rmu_sc0000613.1_g000013 Rmu_sc0001629.1_g000022 Rmu_sc0001629.1_g000025 Rmu_sc0002131.1_g000027 Rmu_sc0002137.1_g000006 Rmu_sc0002137.1_g000014 Rmu_sc0002137.1_g000019 Rmu_sc0002472.1_g000002 Rmu_sc0002472.1_g000012 Rmu_sc0002472.1_g000018 Rmu_sc0002472.1_g000034 Rmu_sc0002472.1_g000040 Rmu_sc0002472.1_g000051 Rmu_sc0002638.1_g000005 Rmu_sc0002638.1_g000010 Rmu_sc0002638.1_g000025 Rmu_sc0002638.1_g000030 Rmu_sc0002638.1_g000037 Rmu_sc0002638.1_g000042 Rmu_sc0004339.1_g000019 Rmu_sc0005580.1_g000013 Rmu_sc0006617.1_g000002 Rmu_sc0006986.1_g000003 Rmu_sc0006986.1_g000017 Rmu_sc0008352.1_g000001 Rmu_sc0008352.1_g000002 Rmu_sc0009431.1_g000011 Rmu_sc0011080.1_g000003 Rmu_sc0011080.1_g000006 Rmu_sc0016549.1_g000001 Rmu_sc0016549.1_g000002 Rmu_sc0017154.1_g000001 Rmu_sc0017155.1_g000001 Rmu_sc0028438.1_g000001 Rmu_sc0041413.1_g000001 Rmu_ssc0000330.1_g000022
rosa_roxburghii Rroxscaffold_1G00020750 Rroxscaffold_1G00053460 Rroxscaffold_1G00054250 Rroxscaffold_1G00054260 Rroxscaffold_1G00054270 Rroxscaffold_1G00054290 Rroxscaffold_2G00120210 Rroxscaffold_4G00313460 Rroxscaffold_4G00313470 Rroxscaffold_4G00330630 Rroxscaffold_5G00347070 Rroxscaffold_5G00347110 Rroxscaffold_5G00378670 Rroxscaffold_5G00378690 Rroxscaffold_5G00378720 Rroxscaffold_5G00378730 Rroxscaffold_5G00378740 Rroxscaffold_5G00378760 Rroxscaffold_5G00378780 Rroxscaffold_5G00378790 Rroxscaffold_5G00378800 Rroxscaffold_5G00378810 Rroxscaffold_5G00378820 Rroxscaffold_5G00378840 Rroxscaffold_5G00378860 Rroxscaffold_5G00378870 Rroxscaffold_7G00196060
rosa_rugosa Rorug01G0142200.1 Rorug01G0332800 Rorug02G0012200 Rorug02G0248300 Rorug03G0219000 Rorug03G0219100 Rorug03G0219200 Rorug04G0035100 Rorug04G0301500 Rorug04G0301500 Rorug04G0301700 Rorug04G0301800 Rorug04G0301800 Rorug04G0301900 Rorug04G0302000 Rorug04G0302500 Rorug04G0302600 Rorug04G0302700 Rorug04G0302800 Rorug04G0302900 Rorug04G0303000 Rorug04G0303000 Rorug04G0303100 Rorug04G0303200 Rorug04G0303300 Rorug04G0303400 Rorug04G0303500 Rorug04G0303500 Rorug05G0087800 Rorug05G0088200 Rorug05G0326300 Rorug06G0173000
rosa_samantha Rh2AG222400 Rh4DG224800 Rh4DG359900 Rh4DG360000 Rh4DG360100 Rh4DG360200 Rh4DG360300 Rh4DG360500 Rh4DG360700 Rh4DG360800 Rh4DG360900 Rh4DG361000 Rh5DG177900 Rh5DG178200 Rh5DG178400 Rh6CG187800
rosa_wichuraiana Rw1G013580 Rw4G009020 Rw4G019580 Rw4G030990 Rw4G031000 Rw4G031220 Rw4G031230 Rw4G031240 Rw4G031250 Rw4G031260 Rw4G031270 Rw4G031280 Rw4G031290 Rw4G031310 Rw4G031320 Rw4G031330 Rw4G031340 Rw4G031360 Rw4G031370 Rw5G016310 Rw5G016320 Rw5G016330 Rw5G036760 Rw6G016090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 551
AccB7I CCANNNNNTGG 1 cut(s) 139
AccI GTMKAC 1 cut(s) 400
AciI CCGC 2 cut(s) 5, 478
AclWI GGATC 3 cut(s) 299, 312, 446
AcoI YGGCCR 1 cut(s) 126
AcsI RAATTY 2 cut(s) 52, 386
AcyI GRCGYC 1 cut(s) 548
AfiI CCNNNNNNNGG 2 cut(s) 80, 139
AgsI TTSAA 1 cut(s) 497
AjnI CCWGG 1 cut(s) 354
AluBI AGCT 1 cut(s) 136
AluI AGCT 1 cut(s) 136
Alw26I GTCTC 2 cut(s) 32, 307
AlwI GGATC 3 cut(s) 299, 312, 446
AoxI GGCC 2 cut(s) 126, 145
ApoI RAATTY 2 cut(s) 52, 386
BamHI GGATCC 1 cut(s) 304
BbsI GAAGAC 1 cut(s) 551
BccI CCATC 1 cut(s) 137
BciT130I CCWGG 1 cut(s) 356
BcoDI GTCTC 2 cut(s) 32, 307
BfaI CTAG 1 cut(s) 75
BfmI CTRYAG 1 cut(s) 469
BglII AGATCT 1 cut(s) 271
Bme1390I CCNGG 1 cut(s) 356
BmiI GGNNCC 2 cut(s) 39, 306
BmrFI CCNGG 1 cut(s) 356
BmsI GCATC 1 cut(s) 79
BpiI GAAGAC 1 cut(s) 551
BpuEI CTTGAG 2 cut(s) 84, 269
BsaHI GRCGYC 1 cut(s) 548
BsaI GGTCTC 1 cut(s) 32
Bsc4I CCNNNNNNNGG 2 cut(s) 80, 139
Bse118I RCCGGY 2 cut(s) 124, 511
Bse1I ACTGG 1 cut(s) 220
BseBI CCWGG 1 cut(s) 356
BseGI GGATG 1 cut(s) 148
BseLI CCNNNNNNNGG 2 cut(s) 80, 139
BseMII CTCAG 1 cut(s) 408
BseNI ACTGG 1 cut(s) 220
BseRI GAGGAG 1 cut(s) 452
BseYI CCCAGC 1 cut(s) 132
BsgI GTGCAG 1 cut(s) 225
Bsh1285I CGRYCG 1 cut(s) 512
BshFI GGCC 2 cut(s) 128, 147
BsiEI CGRYCG 1 cut(s) 512
BsiSI CCGG 2 cut(s) 125, 512
BslI CCNNNNNNNGG 2 cut(s) 80, 139
BsmAI GTCTC 2 cut(s) 32, 307
BsnI GGCC 2 cut(s) 128, 147
Bso31I GGTCTC 1 cut(s) 32
Bsp143I GATC 3 cut(s) 271, 304, 451
BspACI CCGC 2 cut(s) 5, 478
BspANI GGCC 2 cut(s) 128, 147
BspCNI CTCAG 1 cut(s) 407
BspLI GGNNCC 2 cut(s) 39, 306
BspPI GGATC 3 cut(s) 299, 312, 446
BspTNI GGTCTC 1 cut(s) 32
BsrFI RCCGGY 2 cut(s) 124, 511
BsrI ACTGG 1 cut(s) 220
BssAI RCCGGY 2 cut(s) 124, 511
BssMI GATC 3 cut(s) 271, 304, 451
BssNI GRCGYC 1 cut(s) 548
Bst2UI CCWGG 1 cut(s) 356
Bst4CI ACNGT 2 cut(s) 367, 430
Bst6I CTCTTC 1 cut(s) 492
BstACI GRCGYC 1 cut(s) 548
BstAPI GCANNNNNTGC 1 cut(s) 431
BstC8I GCNNGC 2 cut(s) 240, 561
BstDEI CTNAG 1 cut(s) 394
BstF5I GGATG 1 cut(s) 148
BstKTI GATC 3 cut(s) 274, 307, 454
BstMAI GTCTC 2 cut(s) 32, 307
BstMBI GATC 3 cut(s) 271, 304, 451
BstMCI CGRYCG 1 cut(s) 512
BstMWI GCNNNNNNNGC 4 cut(s) 196, 431, 565, 574
BstNI CCWGG 1 cut(s) 356
BstNSI RCATGY 1 cut(s) 238
BstSCI CCNGG 1 cut(s) 354
BstSFI CTRYAG 1 cut(s) 469
BstV2I GAAGAC 1 cut(s) 551
BstX2I RGATCY 2 cut(s) 271, 304
BstYI RGATCY 2 cut(s) 271, 304
BsuRI GGCC 2 cut(s) 128, 147
BtsCI GGATG 1 cut(s) 148
BtsIMutI CAGTG 2 cut(s) 213, 372
Cac8I GCNNGC 2 cut(s) 240, 561
Cfr10I RCCGGY 2 cut(s) 124, 511
CspCI CAANNNNNGTGG 2 cut(s) 118, 153
CviAII CATG 4 cut(s) 33, 235, 250, 301
CviJI RGCY 6 cut(s) 40, 128, 136, 147, 219, 515
CviKI_1 RGCY 6 cut(s) 40, 128, 136, 147, 219, 515
DdeI CTNAG 1 cut(s) 394
DpnI GATC 3 cut(s) 273, 306, 453
DpnII GATC 3 cut(s) 271, 304, 451
EaeI YGGCCR 1 cut(s) 126
Eam1104I CTCTTC 1 cut(s) 492
EarI CTCTTC 1 cut(s) 492
EciI GGCGGA 1 cut(s) 20
Eco31I GGTCTC 1 cut(s) 32
Eco32I GATATC 1 cut(s) 10
EcoRI GAATTC 1 cut(s) 386
EcoRII CCWGG 1 cut(s) 354
EcoRV GATATC 1 cut(s) 10
FaeI CATG 4 cut(s) 36, 238, 253, 304
FaiI YATR 5 cut(s) 34, 236, 251, 302, 555
FatI CATG 4 cut(s) 32, 234, 249, 300
FblI GTMKAC 1 cut(s) 400
FokI GGATG 1 cut(s) 155
FspBI CTAG 1 cut(s) 75
GsaI CCCAGC 1 cut(s) 136
HaeIII GGCC 2 cut(s) 128, 147
HapII CCGG 2 cut(s) 125, 512
Hin1I GRCGYC 1 cut(s) 548
Hin1II CATG 4 cut(s) 36, 238, 253, 304
HinfI GANTC 4 cut(s) 46, 332, 374, 505
HpaII CCGG 2 cut(s) 125, 512
Hpy166II GTNNAC 1 cut(s) 401
Hpy188I TCNGA 3 cut(s) 51, 385, 451
Hpy188III TCNNGA 2 cut(s) 101, 488
Hpy8I GTNNAC 1 cut(s) 401
HpyAV CCTTC 5 cut(s) 319, 406, 415, 475, 567
HpyCH4III ACNGT 2 cut(s) 367, 430
HpyCH4IV ACGT 1 cut(s) 548
HpyCH4V TGCA 7 cut(s) 92, 190, 242, 265, 434, 464, 563
HpyF10VI GCNNNNNNNGC 4 cut(s) 196, 431, 565, 574
HpyF3I CTNAG 1 cut(s) 394
HpySE526I ACGT 1 cut(s) 548
Hsp92I GRCGYC 1 cut(s) 548
Hsp92II CATG 4 cut(s) 36, 238, 253, 304
Kzo9I GATC 3 cut(s) 271, 304, 451
LmnI GCTCC 1 cut(s) 37
LweI GCATC 1 cut(s) 79
MaeI CTAG 1 cut(s) 75
MaeII ACGT 1 cut(s) 548
MalI GATC 3 cut(s) 273, 306, 453
MboI GATC 3 cut(s) 271, 304, 451
MboII GAAGA 5 cut(s) 382, 509, 514, 544, 556
MflI RGATCY 2 cut(s) 271, 304
MluCI AATT 4 cut(s) 52, 223, 278, 386
MlyI GAGTC 1 cut(s) 383
MnlI CCTC 5 cut(s) 108, 158, 186, 388, 430
MseI TTAA 1 cut(s) 290
MspI CCGG 2 cut(s) 125, 512
MspR9I CCNGG 1 cut(s) 356
MvaI CCWGG 1 cut(s) 356
MwoI GCNNNNNNNGC 4 cut(s) 196, 431, 565, 574
NdeII GATC 3 cut(s) 271, 304, 451
NlaIII CATG 4 cut(s) 36, 238, 253, 304
NlaIV GGNNCC 2 cut(s) 39, 306
NspI RCATGY 1 cut(s) 238
PfeI GAWTC 3 cut(s) 46, 332, 505
PflMI CCANNNNNTGG 1 cut(s) 139
PleI GAGTC 1 cut(s) 382
PpsI GAGTC 1 cut(s) 382
Psp6I CCWGG 1 cut(s) 354
PspFI CCCAGC 1 cut(s) 132
PspGI CCWGG 1 cut(s) 354
PspN4I GGNNCC 2 cut(s) 39, 306
PsuI RGATCY 2 cut(s) 271, 304
SaqAI TTAA 1 cut(s) 290
Sau3AI GATC 3 cut(s) 271, 304, 451
SchI GAGTC 1 cut(s) 383
ScrFI CCNGG 1 cut(s) 356
SetI ASST 8 cut(s) 76, 100, 138, 360, 400, 470, 486, 551
SfaNI GCATC 1 cut(s) 79
SfcI CTRYAG 1 cut(s) 469
SmlI CTYRAG 2 cut(s) 99, 284
SmoI CTYRAG 2 cut(s) 99, 284
Sse9I AATT 4 cut(s) 52, 223, 278, 386
SsiI CCGC 2 cut(s) 5, 478
SspMI CTAG 1 cut(s) 75
StyD4I CCNGG 1 cut(s) 354
TaaI ACNGT 2 cut(s) 367, 430
TaiI ACGT 1 cut(s) 551
TaqI TCGA 2 cut(s) 221, 508
TasI AATT 4 cut(s) 52, 223, 278, 386
TfiI GAWTC 3 cut(s) 46, 332, 505
Tru1I TTAA 1 cut(s) 290
Tru9I TTAA 1 cut(s) 290
TscAI CASTG 2 cut(s) 220, 372
TspDTI ATGAA 2 cut(s) 48, 537
TspRI CASTG 2 cut(s) 220, 372
Van91I CCANNNNNTGG 1 cut(s) 139
XapI RAATTY 2 cut(s) 52, 386
XceI RCATGY 1 cut(s) 238
XcmI CCANNNNNNNNNTGG 2 cut(s) 136, 140
XmiI GTMKAC 1 cut(s) 400
XspI CTAG 1 cut(s) 75
ZraI GACGTC 1 cut(s) 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.