Rroxscaffold_5G00378870

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000078
Physical Location & Seq
Reverse (-)
59396380 .. 59399007
2628 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00378870.1

Sequence Viewer

Length: 1668 bp
ATGGGCGTAGTAATCCTTGTTTCAAGCTTTCTGTGTGTGTTTCTTCTCCTAGGCCTCATCAAGATCGTTTACAAGCTATGGTGGACTCCGACTCGCATACAGAAGCTGCTGGCTTCTCAAGGAATCAGAGGCCCTTGTTACAGACTCATCTATGGGAACACCAAGGAAATCTCCAGCATGCACAAGGAAGCCATGAGCAGGCCATTGGGTTTATCCCATGACATACTTTCTTATGTTCAACCTCATATTCACTCATGGACCAATATATATGGTATTTTAAGCTCTTCACTAACTCTTGTTTTTGAATCTTCCTTTCAAAGATTATATCTCGGGTCATCTTTGTCAACAGGGAAGACTTACCTTCAGTGGCATGGTTCGCGAGCTCAGTTGGTTATTCAAGAACCTGAGTTGTGCAAAGAGATACTGAACAACAAAGAAAGGGCTTATCCGAAAAGAGGGTCTGAAGACTTTGTGAAGAAGCTATTAGGCGATGGCCTTGTTACTATAGTAGAACCTGAAAAATGGGCAAAGTTGCGAAGGATTGCCACCCATGCCTTCCATGGGGAGAGCTTAAAAGTAAGTCGTTCTTATCAGTTTACTGGTGATTTCTTGCAAAAACTACATGTGACTATGATTCCAGATATGATAGCTAGTGCTGAGACAATGCTAGAAAGGTGGAAAAATCACGAAGGAAAAGAGATTGAGGTCTTTGAGGAATTTAGGTTGTTCACTTCAGAAGTGATTGCTAAGACAGCCTTTGGAAGTAGCTATGTAGAAGGAGAGCTCATTTTTCAGATGTTGATGAAGTTGGCCTTCTTATTATTCAAAAATGCCCTCACAGTCAAGGTTCCTGGCATAAGCAAGATATCTAAAAGCTGCGATGAGATAGAATCAGAGAGACTCGAGAAAGGAATTCGTGACTCCATAACAGAAATTGTTAAGAACAGAGAAAAGAAGCCAATGAGTGATGAAGAAGACAGCTTTGGGAGTGATTTTCTTGGATTACTTTTGAAGGCTCATCATGATGCCAATCAGAGCCAGAGAATTTCCGTGGATGATTTAGTTGACGATTGCAAGACATTTTACTTTGCTGGACAAGAAACCACTAATACTCTACTTTCTTGGACAGTGTTACTCCTAGCACTTCATATAGATTGGCAAGAGGAAGCAAGGAAGGAGGTCCTACAATTATTTGGAAAACAGAATCCAAATCCTGATGGCATTTCCAAACTAAAAACGATGAATATGATCATCAATGAGACTCTAAGGTTGTATCCTCCTGTTGTTGGCCTTGTAAGGAAAGCTGGAAGAGAAGTTACATTGGGAAAGGTCATTATTCCTGCTGATCTTGAACTGTTTGTCTCAGTTCTAGCACTTCACCATGAACCTCAATTCTGGGGACCAGATGTGCATCTTTTCAAACCAGAGAGATTTTCAGAAGGGGTTGCTAAAGCTACTAAAAATAATATAGGTGCCTTCATGCCCTTTGGCTTGGGACCTCGAACTTGTGTGGGCTTGAACTTTGCAACCACTGAAGCTAAGATTGCACTGTCAATGATTCTACAACGCTACTCGTTCTCCCTTTCACCGGGTTATGTCCACTCGCCCTTTCAGTTTGTTACAGTTCGCCCACAACATGGAGTCCAAGTTATACTGCAGCCATTATGA

Protein Analysis

555

Amino Acids

62.86

Weight (kDa)

8.64

Isoelectric Point (pI)

38.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 116 - 532 3.2e-69 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000078)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g15240 FvH4_3g15270 FvH4_3g15280 FvH4_3g32750 FvH4_3g32760 FvH4_3g32760 FvH4_3g32880 FvH4_4g08190 FvH4_4g29160 FvH4_4g29370 FvH4_4g29400 FvH4_4g29420 FvH4_4g29420 FvH4_4g29420 FvH4_4g29430 FvH4_4g29440 FvH4_4g29450 FvH4_4g29450 FvH4_4g29450 FvH4_4g29460 FvH4_4g29461 FvH4_4g29462 FvH4_4g29463 FvH4_4g29480 FvH4_4g29481 FvH4_4g29482 FvH4_4g29483 FvH4_4g29484 FvH4_6g26720 FvH4_6g26720
malus_domestica MD00G1065200.v1.1 MD06G1145800.v1.1 MD06G1146000.v1.1 MD06G1146700.v1.1 MD13G1031000.v1.1 MD13G1033900.v1.1 MD13G1057000.v1.1 MD13G1057100.v1.1 MD13G1057200.v1.1 MD13G1057400.v1.1 MD13G1057800.v1.1 MD13G1058000.v1.1 MD13G1058100.v1.1 MD13G1058200.v1.1 MD13G1058300.v1.1 MD13G1058500.v1.1 MD13G1058600.v1.1 MD13G1058700.v1.1 MD16G1035700.v1.1 MD16G1056400.v1.1 MD16G1056600.v1.1 MD16G1056700.v1.1 MD16G1056900.v1.1 MD16G1058100.v1.1
prunus_persica Prupe.1G291100_v2.0.a1 Prupe.1G291200_v2.0.a1 Prupe.1G291500_v2.0.a1 Prupe.1G291600_v2.0.a1 Prupe.1G291700_v2.0.a1 Prupe.1G291800_v2.0.a1 Prupe.1G291900_v2.0.a1 Prupe.1G292000_v2.0.a1 Prupe.1G292100_v2.0.a1 Prupe.1G292400_v2.0.a1 Prupe.1G292500_v2.0.a1 Prupe.1G292600_v2.0.a1 Prupe.1G292700_v2.0.a1 Prupe.1G292800_v2.0.a1 Prupe.1G296000_v2.0.a1 Prupe.1G296100_v2.0.a1 Prupe.1G296300_v2.0.a1 Prupe.1G296600_v2.0.a1 Prupe.1G296900_v2.0.a1 Prupe.1G534600_v2.0.a1 Prupe.5G046700_v2.0.a1 Prupe.8G021800_v2.0.a1 Prupe.8G026400_v2.0.a1
pyrus_communis pycom06g13510 pycom06g13530 pycom06g13540 pycom06g13570 pycom06g13590 pycom06g13620 pycom13g02710 pycom13g02930 pycom13g05100 pycom13g05110 pycom13g05140 pycom13g05160 pycom13g05170 pycom13g05190 pycom13g05200 pycom13g05210 pycom13g05220 pycom16g03060 pycom16g04940 pycom16g04960 pycom16g04990 pycom16g05000 pycom16g05080
rosa_chinensis RchiOBHm_Chr1g0337981 RchiOBHm_Chr1g0337991 RchiOBHm_Chr1g0339431 RchiOBHm_Chr4g0402401 RchiOBHm_Chr4g0420571 RchiOBHm_Chr4g0420601 RchiOBHm_Chr4g0420611 RchiOBHm_Chr4g0420621 RchiOBHm_Chr4g0420631 RchiOBHm_Chr4g0437211 RchiOBHm_Chr4g0437221 RchiOBHm_Chr4g0437251 RchiOBHm_Chr4g0437431 RchiOBHm_Chr4g0437441 RchiOBHm_Chr4g0437491 RchiOBHm_Chr4g0437501 RchiOBHm_Chr4g0437511 RchiOBHm_Chr4g0437521 RchiOBHm_Chr4g0437531 RchiOBHm_Chr4g0437541 RchiOBHm_Chr4g0437551 RchiOBHm_Chr4g0437591 RchiOBHm_Chr4g0437631 RchiOBHm_Chr4g0437641 RchiOBHm_Chr4g0437671 RchiOBHm_Chr4g0437681 RchiOBHm_Chr4g0437711 RchiOBHm_Chr4g0437731 RchiOBHm_Chr4g0437741 RchiOBHm_Chr4g0437751 RchiOBHm_Chr5g0025681 RchiOBHm_Chr5g0025711 RchiOBHm_Chr5g0025731 RchiOBHm_Chr5g0059841 RchiOBHm_Chr6g0272651
rosa_laevigata RLG00000006420 RLG00000006421 RLG00000006423 RLG00000006426 RLG00000006427 RLG00000006428 RLG00000006429 RLG00000006431 RLG00000006433 RLG00000006434 RLG00000006435 RLG00000006436 RLG00000006437 RLG00000006455 RLG00000007746 RLG00000007747 RLG00000007748 RLG00000007749 RLG00000007750 RLG00000009091 RLG00000009092 RLG00000009095 RLG00000009096 RLG00000017856 RLG00000028094 RLG00000029230 RLG00000029231 RLG00000030008 RLG00000032859 RLG00000032860 RLG00000032861 RLG00000032865 RLG00000032868 RLG00000035332
rosa_multiflora Rmu_co7986016.1_g000001 Rmu_co8226539.1_g000001 Rmu_co8349613.1_g000001 Rmu_sc0000272.1_g000014 Rmu_sc0000591.1_g000003 Rmu_sc0000613.1_g000013 Rmu_sc0001629.1_g000022 Rmu_sc0001629.1_g000025 Rmu_sc0002131.1_g000027 Rmu_sc0002137.1_g000006 Rmu_sc0002137.1_g000014 Rmu_sc0002137.1_g000019 Rmu_sc0002472.1_g000002 Rmu_sc0002472.1_g000012 Rmu_sc0002472.1_g000018 Rmu_sc0002472.1_g000034 Rmu_sc0002472.1_g000040 Rmu_sc0002472.1_g000051 Rmu_sc0002638.1_g000005 Rmu_sc0002638.1_g000010 Rmu_sc0002638.1_g000025 Rmu_sc0002638.1_g000030 Rmu_sc0002638.1_g000037 Rmu_sc0002638.1_g000042 Rmu_sc0004339.1_g000019 Rmu_sc0005580.1_g000013 Rmu_sc0006617.1_g000002 Rmu_sc0006986.1_g000003 Rmu_sc0006986.1_g000017 Rmu_sc0008352.1_g000001 Rmu_sc0008352.1_g000002 Rmu_sc0009431.1_g000011 Rmu_sc0011080.1_g000003 Rmu_sc0011080.1_g000006 Rmu_sc0016549.1_g000001 Rmu_sc0016549.1_g000002 Rmu_sc0017154.1_g000001 Rmu_sc0017155.1_g000001 Rmu_sc0028438.1_g000001 Rmu_sc0041413.1_g000001 Rmu_ssc0000330.1_g000022
rosa_roxburghii Rroxscaffold_1G00020750 Rroxscaffold_1G00053460 Rroxscaffold_1G00054250 Rroxscaffold_1G00054260 Rroxscaffold_1G00054270 Rroxscaffold_1G00054290 Rroxscaffold_2G00120210 Rroxscaffold_4G00313460 Rroxscaffold_4G00313470 Rroxscaffold_4G00330630 Rroxscaffold_5G00347070 Rroxscaffold_5G00347110 Rroxscaffold_5G00378670 Rroxscaffold_5G00378690 Rroxscaffold_5G00378720 Rroxscaffold_5G00378730 Rroxscaffold_5G00378740 Rroxscaffold_5G00378760 Rroxscaffold_5G00378780 Rroxscaffold_5G00378790 Rroxscaffold_5G00378800 Rroxscaffold_5G00378810 Rroxscaffold_5G00378820 Rroxscaffold_5G00378840 Rroxscaffold_5G00378860 Rroxscaffold_5G00378870 Rroxscaffold_7G00196060
rosa_rugosa Rorug01G0142200.1 Rorug01G0332800 Rorug02G0012200 Rorug02G0248300 Rorug03G0219000 Rorug03G0219100 Rorug03G0219200 Rorug04G0035100 Rorug04G0301500 Rorug04G0301500 Rorug04G0301700 Rorug04G0301800 Rorug04G0301800 Rorug04G0301900 Rorug04G0302000 Rorug04G0302500 Rorug04G0302600 Rorug04G0302700 Rorug04G0302800 Rorug04G0302900 Rorug04G0303000 Rorug04G0303000 Rorug04G0303100 Rorug04G0303200 Rorug04G0303300 Rorug04G0303400 Rorug04G0303500 Rorug04G0303500 Rorug05G0087800 Rorug05G0088200 Rorug05G0326300 Rorug06G0173000
rosa_samantha Rh2AG222400 Rh4DG224800 Rh4DG359900 Rh4DG360000 Rh4DG360100 Rh4DG360200 Rh4DG360300 Rh4DG360500 Rh4DG360700 Rh4DG360800 Rh4DG360900 Rh4DG361000 Rh5DG177900 Rh5DG178200 Rh5DG178400 Rh6CG187800
rosa_wichuraiana Rw1G013580 Rw4G009020 Rw4G019580 Rw4G030990 Rw4G031000 Rw4G031220 Rw4G031230 Rw4G031240 Rw4G031250 Rw4G031260 Rw4G031270 Rw4G031280 Rw4G031290 Rw4G031310 Rw4G031320 Rw4G031330 Rw4G031340 Rw4G031360 Rw4G031370 Rw5G016310 Rw5G016320 Rw5G016330 Rw5G036760 Rw6G016090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1472
AccB7I CCANNNNNTGG 1 cut(s) 1637
AccII CGCG 1 cut(s) 379
AcsI RAATTY 3 cut(s) 716, 912, 1044
AcuI CTGAAG 4 cut(s) 347, 483, 717, 1554
AfiI CCNNNNNNNGG 6 cut(s) 198, 455, 561, 1286, 1588, 1637
AflIII ACRYGT 1 cut(s) 622
AjnI CCWGG 1 cut(s) 850
AjuI GAANNNNNNNTTGG 2 cut(s) 966, 998
Alw21I GWGCWC 2 cut(s) 385, 786
Alw26I GTCTC 4 cut(s) 653, 892, 1253, 1366
AlwNI CAGNNNCTG 1 cut(s) 106
Ama87I CYCGRG 2 cut(s) 329, 902
AoxI GGCC 6 cut(s) 52, 130, 200, 493, 810, 1288
ApeKI GCWGC 3 cut(s) 106, 876, 1657
ApoI RAATTY 3 cut(s) 716, 912, 1044
ArsI GACNNNNNNTTYG 2 cut(s) 443, 475
AspA2I CCTAGG 1 cut(s) 49
AspS9I GGNCC 5 cut(s) 131, 258, 1180, 1400, 1496
AsuC2I CCSGG 1 cut(s) 1590
AsuHPI GGTGA 3 cut(s) 614, 1370, 1578
AvaI CYCGRG 2 cut(s) 329, 902
AvaII GGWCC 4 cut(s) 258, 1180, 1400, 1496
AvrII CCTAGG 1 cut(s) 49
BanI GGYRCC 1 cut(s) 1472
BanII GRGCYC 2 cut(s) 385, 786
BarI GAAGNNNNNNTAC 2 cut(s) 1300, 1332
BbsI GAAGAC 3 cut(s) 359, 471, 981
Bbv12I GWGCWC 2 cut(s) 385, 786
BbvI GCAGC 2 cut(s) 93, 863
BccI CCATC 2 cut(s) 485, 1211
BciT130I CCWGG 1 cut(s) 852
BciVI GTATCC 1 cut(s) 1284
BclI TGATCA 1 cut(s) 1248
BcnI CCSGG 1 cut(s) 1590
BcoDI GTCTC 4 cut(s) 653, 892, 1253, 1366
BfaI CTAG 5 cut(s) 50, 651, 668, 1139, 1370
BfmI CTRYAG 2 cut(s) 504, 1655
BfuI GTATCC 1 cut(s) 1284
BisI GCNGC 3 cut(s) 107, 877, 1658
BlnI CCTAGG 1 cut(s) 49
BlsI GCNGC 3 cut(s) 108, 878, 1659
Bme1390I CCNGG 2 cut(s) 852, 1590
Bme18I GGWCC 4 cut(s) 258, 1180, 1400, 1496
BmeT110I CYCGRG 2 cut(s) 329, 902
BmgT120I GGNCC 5 cut(s) 131, 258, 1180, 1400, 1496
BmiI GGNNCC 4 cut(s) 849, 1401, 1474, 1497
BmrFI CCNGG 2 cut(s) 852, 1590
BmsI GCATC 2 cut(s) 1015, 1420
BpiI GAAGAC 3 cut(s) 359, 471, 981
BpmI CTGGAG 1 cut(s) 157
BpuEI CTTGAG 1 cut(s) 102
BpuMI CCSGG 1 cut(s) 1590
BsaBI GATNNNNATC 2 cut(s) 1029, 1410
BsaJI CCNNGG 4 cut(s) 49, 162, 559, 1050
BsaXI ACNNNNNCTCC 4 cut(s) 1562, 1592, 1632, 1662
Bsc4I CCNNNNNNNGG 6 cut(s) 198, 455, 561, 1286, 1588, 1637
Bse1I ACTGG 1 cut(s) 604
Bse8I GATNNNNATC 2 cut(s) 1029, 1410
BseBI CCWGG 1 cut(s) 852
BseDI CCNNGG 4 cut(s) 49, 162, 559, 1050
BseGI GGATG 1 cut(s) 1060
BseJI GATNNNNATC 2 cut(s) 1029, 1410
BseLI CCNNNNNNNGG 6 cut(s) 198, 455, 561, 1286, 1588, 1637
BseMII CTCAG 4 cut(s) 396, 398, 648, 1377
BseNI ACTGG 1 cut(s) 604
BseXI GCAGC 2 cut(s) 93, 863
Bsh1236I CGCG 1 cut(s) 379
BshFI GGCC 6 cut(s) 54, 132, 202, 495, 812, 1290
BshNI GGYRCC 1 cut(s) 1472
BsiHKAI GWGCWC 2 cut(s) 385, 786
BsiHKCI CYCGRG 2 cut(s) 329, 902
BsiSI CCGG 1 cut(s) 1589
BslFI GGGAC 2 cut(s) 1413, 1509
BslI CCNNNNNNNGG 6 cut(s) 198, 455, 561, 1286, 1588, 1637
BsmAI GTCTC 4 cut(s) 653, 892, 1253, 1366
BsmFI GGGAC 2 cut(s) 1413, 1509
BsnI GGCC 6 cut(s) 54, 132, 202, 495, 812, 1290
BsoBI CYCGRG 2 cut(s) 329, 902
Bsp1286I GDGCHC 2 cut(s) 385, 786
Bsp143I GATC 3 cut(s) 63, 1248, 1345
Bsp19I CCATGG 1 cut(s) 559
Bsp68I TCGCGA 1 cut(s) 379
BspANI GGCC 6 cut(s) 54, 132, 202, 495, 812, 1290
BspCNI CTCAG 4 cut(s) 397, 397, 649, 1376
BspFNI CGCG 1 cut(s) 379
BspHI TCATGA 1 cut(s) 1021
BspLI GGNNCC 4 cut(s) 849, 1401, 1474, 1497
BspMAI CTGCAG 1 cut(s) 1659
BspQI GCTCTTC 1 cut(s) 289
BspT107I GGYRCC 1 cut(s) 1472
BsrI ACTGG 1 cut(s) 604
BssECI CCNNGG 4 cut(s) 49, 162, 559, 1050
BssMI GATC 3 cut(s) 63, 1248, 1345
BssT1I CCWWGG 3 cut(s) 49, 162, 559
Bst2UI CCWGG 1 cut(s) 852
Bst4CI ACNGT 5 cut(s) 841, 1129, 1356, 1551, 1624
Bst6I CTCTTC 2 cut(s) 289, 1303
BstC8I GCNNGC 4 cut(s) 111, 179, 200, 381
BstDEI CTNAG 7 cut(s) 384, 405, 657, 747, 1265, 1363, 1539
BstDSI CCRYGG 2 cut(s) 559, 1050
BstF5I GGATG 1 cut(s) 1060
BstFNI CGCG 1 cut(s) 379
BstKTI GATC 3 cut(s) 66, 1251, 1348
BstMAI GTCTC 4 cut(s) 653, 892, 1253, 1366
BstMBI GATC 3 cut(s) 63, 1248, 1345
BstMWI GCNNNNNNNGC 4 cut(s) 376, 551, 752, 1544
BstNI CCWGG 1 cut(s) 852
BstNSI RCATGY 2 cut(s) 181, 626
BstSCI CCNGG 2 cut(s) 850, 1588
BstSFI CTRYAG 2 cut(s) 504, 1655
BstUI CGCG 1 cut(s) 379
BstV1I GCAGC 2 cut(s) 93, 863
BstV2I GAAGAC 3 cut(s) 359, 471, 981
BsuI GTATCC 1 cut(s) 1284
BsuRI GGCC 6 cut(s) 54, 132, 202, 495, 812, 1290
BtgI CCRYGG 2 cut(s) 559, 1050
BtgZI GCGATG 2 cut(s) 504, 894
BtsCI GGATG 1 cut(s) 1060
BtsIMutI CAGTG 4 cut(s) 371, 1134, 1530, 1547
BtuMI TCGCGA 1 cut(s) 379
Cac8I GCNNGC 4 cut(s) 111, 179, 200, 381
CaiI CAGNNNCTG 1 cut(s) 106
CciI TCATGA 1 cut(s) 1021
Cfr13I GGNCC 5 cut(s) 131, 258, 1180, 1400, 1496
DdeI CTNAG 7 cut(s) 384, 405, 657, 747, 1265, 1363, 1539
DpnI GATC 3 cut(s) 65, 1250, 1347
DpnII GATC 3 cut(s) 63, 1248, 1345
Eam1104I CTCTTC 2 cut(s) 289, 1303
EarI CTCTTC 2 cut(s) 289, 1303
Ecl136II GAGCTC 2 cut(s) 383, 784
Eco130I CCWWGG 3 cut(s) 49, 162, 559
Eco147I AGGCCT 1 cut(s) 54
Eco24I GRGCYC 2 cut(s) 385, 786
Eco32I GATATC 1 cut(s) 867
Eco47I GGWCC 4 cut(s) 258, 1180, 1400, 1496
Eco53kI GAGCTC 2 cut(s) 383, 784
Eco57I CTGAAG 4 cut(s) 347, 483, 717, 1554
Eco88I CYCGRG 2 cut(s) 329, 902
EcoICRI GAGCTC 2 cut(s) 383, 784
EcoO109I RGGNCCY 3 cut(s) 131, 1180, 1496
EcoRI GAATTC 1 cut(s) 912
EcoRII CCWGG 1 cut(s) 850
EcoRV GATATC 1 cut(s) 867
EcoT14I CCWWGG 3 cut(s) 49, 162, 559
EcoT38I GRGCYC 2 cut(s) 385, 786
ErhI CCWWGG 3 cut(s) 49, 162, 559
FalI AAGNNNNNCTT 6 cut(s) 571, 603, 740, 772, 797, 829
FaqI GGGAC 2 cut(s) 1413, 1509
FbaI TGATCA 1 cut(s) 1248
Fnu4HI GCNGC 3 cut(s) 107, 877, 1658
FokI GGATG 1 cut(s) 1067
FriOI GRGCYC 2 cut(s) 385, 786
Fsp4HI GCNGC 3 cut(s) 107, 877, 1658
FspBI CTAG 5 cut(s) 50, 651, 668, 1139, 1370
GluI GCNGC 3 cut(s) 107, 877, 1658
GsuI CTGGAG 1 cut(s) 157
HaeIII GGCC 6 cut(s) 54, 132, 202, 495, 812, 1290
HapII CCGG 1 cut(s) 1589
HincII GTYRAC 2 cut(s) 345, 1066
HindII GTYRAC 2 cut(s) 345, 1066
HindIII AAGCTT 1 cut(s) 25
HpaII CCGG 1 cut(s) 1589
HphI GGTGA 3 cut(s) 614, 1370, 1578
Hpy166II GTNNAC 7 cut(s) 70, 84, 345, 597, 729, 1066, 1600
Hpy188I TCNGA 9 cut(s) 90, 128, 450, 463, 736, 795, 895, 1035, 1438
Hpy8I GTNNAC 7 cut(s) 70, 84, 345, 597, 729, 1066, 1600
HpyCH4III ACNGT 5 cut(s) 841, 1129, 1356, 1551, 1624
HpyCH4V TGCA 8 cut(s) 181, 414, 613, 1074, 1411, 1526, 1547, 1657
HpyF10VI GCNNNNNNNGC 4 cut(s) 376, 551, 752, 1544
HpyF3I CTNAG 7 cut(s) 384, 405, 657, 747, 1265, 1363, 1539
Ksp22I TGATCA 1 cut(s) 1248
Kzo9I GATC 3 cut(s) 63, 1248, 1345
LguI GCTCTTC 1 cut(s) 289
Lsp1109I GCAGC 2 cut(s) 93, 863
LweI GCATC 2 cut(s) 1015, 1420
MaeI CTAG 5 cut(s) 50, 651, 668, 1139, 1370
MaeIII GTNAC 7 cut(s) 137, 499, 625, 917, 1131, 1315, 1618
MalI GATC 3 cut(s) 65, 1250, 1347
MboI GATC 3 cut(s) 63, 1248, 1345
MboII GAAGA 9 cut(s) 35, 276, 300, 364, 476, 487, 983, 986, 1320
MhlI GDGCHC 2 cut(s) 385, 786
MluCI AATT 6 cut(s) 716, 912, 933, 1044, 1187, 1391
MlyI GAGTC 7 cut(s) 79, 85, 138, 894, 914, 1255, 1650
MmeI TCCRAC 1 cut(s) 113
MseI TTAA 3 cut(s) 278, 572, 939
MslI CAYNNNNRTG 1 cut(s) 1023
MspI CCGG 1 cut(s) 1589
MspR9I CCNGG 2 cut(s) 852, 1590
MvaI CCWGG 1 cut(s) 852
MvnI CGCG 1 cut(s) 379
MwoI GCNNNNNNNGC 4 cut(s) 376, 551, 752, 1544
NciI CCSGG 1 cut(s) 1590
NcoI CCATGG 1 cut(s) 559
NdeII GATC 3 cut(s) 63, 1248, 1345
NlaIV GGNNCC 4 cut(s) 849, 1401, 1474, 1497
NmuCI GTSAC 2 cut(s) 625, 917
NruI TCGCGA 1 cut(s) 379
NspI RCATGY 2 cut(s) 181, 626
PaeI GCATGC 1 cut(s) 181
PaeR7I CTCGAG 1 cut(s) 902
PagI TCATGA 1 cut(s) 1021
PceI AGGCCT 1 cut(s) 54
PciI ACATGT 1 cut(s) 622
PciSI GCTCTTC 1 cut(s) 289
PfeI GAWTC 6 cut(s) 123, 305, 634, 890, 1204, 1558
PflMI CCANNNNNTGG 1 cut(s) 1637
PkrI GCNGC 3 cut(s) 108, 878, 1659
PleI GAGTC 7 cut(s) 79, 85, 138, 894, 914, 1255, 1649
PpsI GAGTC 7 cut(s) 79, 85, 138, 894, 914, 1255, 1649
PpuMI RGGWCCY 2 cut(s) 1180, 1496
PscI ACATGT 1 cut(s) 622
Psp124BI GAGCTC 2 cut(s) 385, 786
Psp5II RGGWCCY 2 cut(s) 1180, 1496
Psp6I CCWGG 1 cut(s) 850
PspGI CCWGG 1 cut(s) 850
PspN4I GGNNCC 4 cut(s) 849, 1401, 1474, 1497
PspPI GGNCC 5 cut(s) 131, 258, 1180, 1400, 1496
PspPPI RGGWCCY 2 cut(s) 1180, 1496
PstI CTGCAG 1 cut(s) 1659
PstNI CAGNNNCTG 1 cut(s) 106
RruI TCGCGA 1 cut(s) 379
RseI CAYNNNNRTG 1 cut(s) 1023
SacI GAGCTC 2 cut(s) 385, 786
SapI GCTCTTC 1 cut(s) 289
SaqAI TTAA 3 cut(s) 278, 572, 939
SatI GCNGC 3 cut(s) 107, 877, 1658
Sau3AI GATC 3 cut(s) 63, 1248, 1345
Sau96I GGNCC 5 cut(s) 131, 258, 1180, 1400, 1496
SchI GAGTC 7 cut(s) 79, 85, 138, 894, 914, 1255, 1650
ScrFI CCNGG 2 cut(s) 852, 1590
SduI GDGCHC 2 cut(s) 385, 786
SfaNI GCATC 2 cut(s) 1015, 1420
SfcI CTRYAG 2 cut(s) 504, 1655
Sfr274I CTCGAG 1 cut(s) 902
SinI GGWCC 4 cut(s) 258, 1180, 1400, 1496
SlaI CTCGAG 1 cut(s) 902
SmiMI CAYNNNNRTG 1 cut(s) 1023
SmlI CTYRAG 2 cut(s) 117, 902
SmoI CTYRAG 2 cut(s) 117, 902
SphI GCATGC 1 cut(s) 181
Sse9I AATT 6 cut(s) 716, 912, 933, 1044, 1187, 1391
SseBI AGGCCT 1 cut(s) 54
SspMI CTAG 5 cut(s) 50, 651, 668, 1139, 1370
SstI GAGCTC 2 cut(s) 385, 786
StuI AGGCCT 1 cut(s) 54
StyD4I CCNGG 2 cut(s) 850, 1588
StyI CCWWGG 3 cut(s) 49, 162, 559
TaaI ACNGT 5 cut(s) 841, 1129, 1356, 1551, 1624
TaqI TCGA 2 cut(s) 903, 1501
TasI AATT 6 cut(s) 716, 912, 933, 1044, 1187, 1391
TfiI GAWTC 6 cut(s) 123, 305, 634, 890, 1204, 1558
Tru1I TTAA 3 cut(s) 278, 572, 939
Tru9I TTAA 3 cut(s) 278, 572, 939
TscAI CASTG 4 cut(s) 371, 1134, 1537, 1554
TseFI GTSAC 2 cut(s) 625, 917
TseI GCWGC 3 cut(s) 106, 876, 1657
Tsp45I GTSAC 2 cut(s) 625, 917
TspDTI ATGAA 6 cut(s) 818, 984, 1136, 1256, 1398, 1468
TspGWI ACGGA 1 cut(s) 1039
TspRI CASTG 4 cut(s) 371, 1134, 1537, 1554
Van91I CCANNNNNTGG 1 cut(s) 1637
VpaK11BI GGWCC 4 cut(s) 258, 1180, 1400, 1496
XapI RAATTY 3 cut(s) 716, 912, 1044
XceI RCATGY 2 cut(s) 181, 626
XcmI CCANNNNNNNNNTGG 1 cut(s) 557
XhoI CTCGAG 1 cut(s) 902
XmaJI CCTAGG 1 cut(s) 49
XspI CTAG 5 cut(s) 50, 651, 668, 1139, 1370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.