Rroxscaffold_5G00378720

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000078
Physical Location & Seq
Reverse (-)
59162202 .. 59167378
5177 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00378720.1

Sequence Viewer

Length: 2223 bp
ATGCTTCAAGTACCAATTTTAGAAGAAAATTATGAAGATGTCGGTGAGTATGACGACAATAATTCTGTTGAAGAAACTCAATCAAGTGCTGCAGATCAATCATCAAGTAGAAACACTCAAGACCAAGCTCAAGAATCCCAAGAAATTCCAATGAATTCTGATGTAAAGCCATTACTCAATGAAGTTGTTATCACAGGTGGAGCGCAAGGCAAAAATCCGGGTGGAGCAAAGTCTTGGACATGCAAACATTGCAATGGCAAGTTTAGTAGTTCATATACTCGCATTCACTATCATTTTTTTGGTACTCCCCTTGGAAAAAAATCAGAGATTCGTCGATGTCGAGAATTACTCGCCAATCGGGAGGAATATGAGAGGGTTCGCCGAATGGTTATGGAAGCTGAAAAAAAGGGAGTTTCTTCATCTTTGAAAAATTCAACACTCTTGAGGCAGCAACCAAAAAAATCCACCGCGAGTGCTCTTGACGACATGTTCAAGATTATGGACAAAAATTCAGTTGATATGAAGATAGCAGAAGATCCAGGAGAAGCAGAGTTATTACGTAATCAATATGCCATTTTTCATCAGCGAAAGGGTATTTTTGCTACACAACCTGCTCAAACAGATGCTGTGACTATGGATGCCATTGAGACTAGCGTACCGCGTACCCGTACCGCAACGATCCGCGATCCTGGTAACACTGGTATCAACTTTGCTGCCATTGAAGCAAAGATTGCTCTGTCAATGATTCTACAACGCTACTCATTTACCCTTTCCCCGGGTTATGTCCACTCGCCTTCTCAGCTTCTTGCTGTTCGTCCACAACATGGAGTTCAAGTAATTCTTCATTCTGATCAAGATCTTTCACAAACTATGGTGGAATCCGACTCGTATACAGAAGCTGATGGCTTTGCAAGGAATCAAAGTAATAACTTGGTCACTTATACTGCAGGGAAGAATTTTCTTCAATGGCATGGTTCTCGAGCTCAATTGGTCATTACTGAACCTGAGTTGTGCAAAGAGGTACTAAATAACAAAGATAGAACTTTCCTGAAAACCGATACCCCAGTATTTGTAAAGAAGCTATTGGGAGATGGACTTGTTACAACTGAAGGTGAAAAATGGGGAAGATTGCGAAAGCTGGCCAACTCTGCCTTCCATGGAGAGAGCTTAAAGAGTCTGATTCCTGCAACTATAGCTAGTGCTGAGTTGATGCTAGAGAGATGGAAAAATCATGAAGAAGGGAAAGAGATTGAGATGTTTGAAGAATTCAGGTTGTTGACATCAGAAGTGATTTCCAGAACAGCATTTGGTAGCAGCTATTCAGAAGGGAAGAGCATTTTTGACATGTTGATGAAGTTAGCCTTCTTAACATTCAAAAATGCTTTCAAAACTAGGTTTCCTATCATAAGTAACATTTTCAAAACCGGTGATGATTTTGAAGCAGAGAAGCTTGAGAAAGGAGTACGCGACTCCATAATAGAGATAGTCAAGAAAAGAGAACAGAAGGCAAAGACCATGAGGGAGGAAGAAAAAAGTTTTGGGAGTGATTTTCTTGGATTACTTTTGAAAGCTCATCATGATGTCGATGACAACCAGAGGATTACAGTGGATGATTTAGTTGATGAGTGCAAGACATTTTACTTTGCTGGACAAGAAACCACCAACAGTCTGCTAGCTTGGACTGTGTTTCTTCTGGCACTCCATACAGATTGGCAAGAGGAAGCAAGAAAAGAAGTCCTGCAATTATTCAGCAAACAAACTCCAAACCCTGATGACATTTCCAAACTAAAAACAATGGGTATGATCATCAATGAGTCTCTAAGGTTATATCCTCCTGTTGTGTCCCTCGAGAGGAAAGTCGCACGAGAAGTTAGACTCGGAAAACTCCTTGTTCCAGCTGATATTGAAATCATTATTCCATGTTTGGCCCTTCAGCATGAGCCTCAATTCTGGGGACAAGATGTGGAATTGTTCAAACCAGAGAGATTCTCAGAAGGGGTTGCTAAAGCTACCAACAATAACATGGCCACATTTATACCCTTTGGAATGGGACCTAGAAATTGTGTGGGATACAACTTTGCAACCACTGAAGCTAAAATTGCTCTGGCAATGATTCTACAACGCTACACCTTCACACTTTCCCTGGGTTATGTTCACTCGCCCTTTCGGCTTCTTACAGTTCGGCCACAGCATGGAGTTCAAGTAATGCTACACTCACTATGA

Protein Analysis

740

Amino Acids

83.59

Weight (kDa)

6.25

Isoelectric Point (pI)

37.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 316 - 720 3.8e-76 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000078)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g15240 FvH4_3g15270 FvH4_3g15280 FvH4_3g32750 FvH4_3g32760 FvH4_3g32760 FvH4_3g32880 FvH4_4g08190 FvH4_4g29160 FvH4_4g29370 FvH4_4g29400 FvH4_4g29420 FvH4_4g29420 FvH4_4g29420 FvH4_4g29430 FvH4_4g29440 FvH4_4g29450 FvH4_4g29450 FvH4_4g29450 FvH4_4g29460 FvH4_4g29461 FvH4_4g29462 FvH4_4g29463 FvH4_4g29480 FvH4_4g29481 FvH4_4g29482 FvH4_4g29483 FvH4_4g29484 FvH4_6g26720 FvH4_6g26720
malus_domestica MD00G1065200.v1.1 MD06G1145800.v1.1 MD06G1146000.v1.1 MD06G1146700.v1.1 MD13G1031000.v1.1 MD13G1033900.v1.1 MD13G1057000.v1.1 MD13G1057100.v1.1 MD13G1057200.v1.1 MD13G1057400.v1.1 MD13G1057800.v1.1 MD13G1058000.v1.1 MD13G1058100.v1.1 MD13G1058200.v1.1 MD13G1058300.v1.1 MD13G1058500.v1.1 MD13G1058600.v1.1 MD13G1058700.v1.1 MD16G1035700.v1.1 MD16G1056400.v1.1 MD16G1056600.v1.1 MD16G1056700.v1.1 MD16G1056900.v1.1 MD16G1058100.v1.1
prunus_persica Prupe.1G291100_v2.0.a1 Prupe.1G291200_v2.0.a1 Prupe.1G291500_v2.0.a1 Prupe.1G291600_v2.0.a1 Prupe.1G291700_v2.0.a1 Prupe.1G291800_v2.0.a1 Prupe.1G291900_v2.0.a1 Prupe.1G292000_v2.0.a1 Prupe.1G292100_v2.0.a1 Prupe.1G292400_v2.0.a1 Prupe.1G292500_v2.0.a1 Prupe.1G292600_v2.0.a1 Prupe.1G292700_v2.0.a1 Prupe.1G292800_v2.0.a1 Prupe.1G296000_v2.0.a1 Prupe.1G296100_v2.0.a1 Prupe.1G296300_v2.0.a1 Prupe.1G296600_v2.0.a1 Prupe.1G296900_v2.0.a1 Prupe.1G534600_v2.0.a1 Prupe.5G046700_v2.0.a1 Prupe.8G021800_v2.0.a1 Prupe.8G026400_v2.0.a1
pyrus_communis pycom06g13510 pycom06g13530 pycom06g13540 pycom06g13570 pycom06g13590 pycom06g13620 pycom13g02710 pycom13g02930 pycom13g05100 pycom13g05110 pycom13g05140 pycom13g05160 pycom13g05170 pycom13g05190 pycom13g05200 pycom13g05210 pycom13g05220 pycom16g03060 pycom16g04940 pycom16g04960 pycom16g04990 pycom16g05000 pycom16g05080
rosa_chinensis RchiOBHm_Chr1g0337981 RchiOBHm_Chr1g0337991 RchiOBHm_Chr1g0339431 RchiOBHm_Chr4g0402401 RchiOBHm_Chr4g0420571 RchiOBHm_Chr4g0420601 RchiOBHm_Chr4g0420611 RchiOBHm_Chr4g0420621 RchiOBHm_Chr4g0420631 RchiOBHm_Chr4g0437211 RchiOBHm_Chr4g0437221 RchiOBHm_Chr4g0437251 RchiOBHm_Chr4g0437431 RchiOBHm_Chr4g0437441 RchiOBHm_Chr4g0437491 RchiOBHm_Chr4g0437501 RchiOBHm_Chr4g0437511 RchiOBHm_Chr4g0437521 RchiOBHm_Chr4g0437531 RchiOBHm_Chr4g0437541 RchiOBHm_Chr4g0437551 RchiOBHm_Chr4g0437591 RchiOBHm_Chr4g0437631 RchiOBHm_Chr4g0437641 RchiOBHm_Chr4g0437671 RchiOBHm_Chr4g0437681 RchiOBHm_Chr4g0437711 RchiOBHm_Chr4g0437731 RchiOBHm_Chr4g0437741 RchiOBHm_Chr4g0437751 RchiOBHm_Chr5g0025681 RchiOBHm_Chr5g0025711 RchiOBHm_Chr5g0025731 RchiOBHm_Chr5g0059841 RchiOBHm_Chr6g0272651
rosa_laevigata RLG00000006420 RLG00000006421 RLG00000006423 RLG00000006426 RLG00000006427 RLG00000006428 RLG00000006429 RLG00000006431 RLG00000006433 RLG00000006434 RLG00000006435 RLG00000006436 RLG00000006437 RLG00000006455 RLG00000007746 RLG00000007747 RLG00000007748 RLG00000007749 RLG00000007750 RLG00000009091 RLG00000009092 RLG00000009095 RLG00000009096 RLG00000017856 RLG00000028094 RLG00000029230 RLG00000029231 RLG00000030008 RLG00000032859 RLG00000032860 RLG00000032861 RLG00000032865 RLG00000032868 RLG00000035332
rosa_multiflora Rmu_co7986016.1_g000001 Rmu_co8226539.1_g000001 Rmu_co8349613.1_g000001 Rmu_sc0000272.1_g000014 Rmu_sc0000591.1_g000003 Rmu_sc0000613.1_g000013 Rmu_sc0001629.1_g000022 Rmu_sc0001629.1_g000025 Rmu_sc0002131.1_g000027 Rmu_sc0002137.1_g000006 Rmu_sc0002137.1_g000014 Rmu_sc0002137.1_g000019 Rmu_sc0002472.1_g000002 Rmu_sc0002472.1_g000012 Rmu_sc0002472.1_g000018 Rmu_sc0002472.1_g000034 Rmu_sc0002472.1_g000040 Rmu_sc0002472.1_g000051 Rmu_sc0002638.1_g000005 Rmu_sc0002638.1_g000010 Rmu_sc0002638.1_g000025 Rmu_sc0002638.1_g000030 Rmu_sc0002638.1_g000037 Rmu_sc0002638.1_g000042 Rmu_sc0004339.1_g000019 Rmu_sc0005580.1_g000013 Rmu_sc0006617.1_g000002 Rmu_sc0006986.1_g000003 Rmu_sc0006986.1_g000017 Rmu_sc0008352.1_g000001 Rmu_sc0008352.1_g000002 Rmu_sc0009431.1_g000011 Rmu_sc0011080.1_g000003 Rmu_sc0011080.1_g000006 Rmu_sc0016549.1_g000001 Rmu_sc0016549.1_g000002 Rmu_sc0017154.1_g000001 Rmu_sc0017155.1_g000001 Rmu_sc0028438.1_g000001 Rmu_sc0041413.1_g000001 Rmu_ssc0000330.1_g000022
rosa_roxburghii Rroxscaffold_1G00020750 Rroxscaffold_1G00053460 Rroxscaffold_1G00054250 Rroxscaffold_1G00054260 Rroxscaffold_1G00054270 Rroxscaffold_1G00054290 Rroxscaffold_2G00120210 Rroxscaffold_4G00313460 Rroxscaffold_4G00313470 Rroxscaffold_4G00330630 Rroxscaffold_5G00347070 Rroxscaffold_5G00347110 Rroxscaffold_5G00378670 Rroxscaffold_5G00378690 Rroxscaffold_5G00378720 Rroxscaffold_5G00378730 Rroxscaffold_5G00378740 Rroxscaffold_5G00378760 Rroxscaffold_5G00378780 Rroxscaffold_5G00378790 Rroxscaffold_5G00378800 Rroxscaffold_5G00378810 Rroxscaffold_5G00378820 Rroxscaffold_5G00378840 Rroxscaffold_5G00378860 Rroxscaffold_5G00378870 Rroxscaffold_7G00196060
rosa_rugosa Rorug01G0142200.1 Rorug01G0332800 Rorug02G0012200 Rorug02G0248300 Rorug03G0219000 Rorug03G0219100 Rorug03G0219200 Rorug04G0035100 Rorug04G0301500 Rorug04G0301500 Rorug04G0301700 Rorug04G0301800 Rorug04G0301800 Rorug04G0301900 Rorug04G0302000 Rorug04G0302500 Rorug04G0302600 Rorug04G0302700 Rorug04G0302800 Rorug04G0302900 Rorug04G0303000 Rorug04G0303000 Rorug04G0303100 Rorug04G0303200 Rorug04G0303300 Rorug04G0303400 Rorug04G0303500 Rorug04G0303500 Rorug05G0087800 Rorug05G0088200 Rorug05G0326300 Rorug06G0173000
rosa_samantha Rh2AG222400 Rh4DG224800 Rh4DG359900 Rh4DG360000 Rh4DG360100 Rh4DG360200 Rh4DG360300 Rh4DG360500 Rh4DG360700 Rh4DG360800 Rh4DG360900 Rh4DG361000 Rh5DG177900 Rh5DG178200 Rh5DG178400 Rh6CG187800
rosa_wichuraiana Rw1G013580 Rw4G009020 Rw4G019580 Rw4G030990 Rw4G031000 Rw4G031220 Rw4G031230 Rw4G031240 Rw4G031250 Rw4G031260 Rw4G031270 Rw4G031280 Rw4G031290 Rw4G031310 Rw4G031320 Rw4G031330 Rw4G031340 Rw4G031360 Rw4G031370 Rw5G016310 Rw5G016320 Rw5G016330 Rw5G036760 Rw6G016090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 619
AccB7I CCANNNNNTGG 2 cut(s) 824, 2192
AccI GTMKAC 1 cut(s) 890
AccII CGCG 4 cut(s) 470, 661, 684, 1467
AciI CCGC 4 cut(s) 468, 659, 672, 682
AclWI GGATC 3 cut(s) 530, 673, 680
AcoI YGGCCR 3 cut(s) 1140, 2025, 2183
AcsI RAATTY 6 cut(s) 144, 154, 430, 508, 955, 1265
AcuI CTGAAG 3 cut(s) 1128, 1916, 2109
AfaI GTAC 7 cut(s) 12, 304, 657, 664, 670, 1023, 1464
AfiI CCNNNNNNNGG 4 cut(s) 775, 824, 1851, 2192
AflIII ACRYGT 2 cut(s) 486, 1344
AgeI ACCGGT 1 cut(s) 1424
AjnI CCWGG 3 cut(s) 538, 688, 2142
AjuI GAANNNNNNNTTGG 4 cut(s) 1136, 1168, 1521, 1553
Alw21I GWGCWC 2 cut(s) 478, 985
Alw26I GTCTC 2 cut(s) 641, 1821
AlwI GGATC 3 cut(s) 530, 673, 680
AlwNI CAGNNNCTG 2 cut(s) 626, 899
Ama87I CYCGRG 3 cut(s) 775, 978, 1847
AoxI GGCC 4 cut(s) 1140, 1926, 2025, 2183
ApeKI GCWGC 4 cut(s) 89, 448, 713, 1314
ApoI RAATTY 6 cut(s) 144, 154, 430, 508, 955, 1265
AsiGI ACCGGT 1 cut(s) 1424
AspLEI GCGC 1 cut(s) 205
AspS9I GGNCC 2 cut(s) 1927, 2051
AsuC2I CCSGG 3 cut(s) 219, 776, 777
AsuHPI GGTGA 3 cut(s) 56, 1124, 1439
AsuNHI GCTAGC 1 cut(s) 1672
AvaI CYCGRG 3 cut(s) 775, 978, 1847
AvaII GGWCC 1 cut(s) 2051
BaeI ACNNNNGTAYC 6 cut(s) 639, 672, 685, 718, 1050, 1083
BalI TGGCCA 2 cut(s) 1142, 2027
BanII GRGCYC 1 cut(s) 985
BauI CACGAG 1 cut(s) 1863
Bbv12I GWGCWC 2 cut(s) 478, 985
BbvI GCAGC 4 cut(s) 76, 460, 700, 1326
BccI CCATC 3 cut(s) 896, 1085, 1215
BcgI CGANNNNNNTGC 2 cut(s) 959, 993
BciT130I CCWGG 3 cut(s) 540, 690, 2144
BciVI GTATCC 1 cut(s) 2063
BclI TGATCA 2 cut(s) 850, 1803
BcnI CCSGG 3 cut(s) 219, 776, 777
BcoDI GTCTC 2 cut(s) 641, 1821
BfaI CTAG 6 cut(s) 651, 1197, 1214, 1392, 1673, 2055
BfmI CTRYAG 3 cut(s) 90, 945, 1191
BfuAI ACCTGC 1 cut(s) 619
BfuI GTATCC 1 cut(s) 2063
BglI GCCNNNNNGGC 1 cut(s) 2167
BglII AGATCT 1 cut(s) 856
BisI GCNGC 4 cut(s) 90, 449, 714, 1315
BlsI GCNGC 4 cut(s) 91, 450, 715, 1316
Bme1390I CCNGG 6 cut(s) 219, 540, 690, 776, 777, 2144
Bme18I GGWCC 1 cut(s) 2051
BmeT110I CYCGRG 3 cut(s) 775, 978, 1847
BmgT120I GGNCC 2 cut(s) 1927, 2051
BmiI GGNNCC 1 cut(s) 2052
BmrFI CCNGG 6 cut(s) 219, 540, 690, 776, 777, 2144
BmrI ACTGGG 1 cut(s) 1058
BmsI GCATC 3 cut(s) 613, 628, 1200
BmtI GCTAGC 1 cut(s) 1676
BmuI ACTGGG 1 cut(s) 1058
BplI GAGNNNNNCTC 4 cut(s) 333, 365, 1973, 2005
BpuEI CTTGAG 4 cut(s) 102, 114, 463, 1472
BpuMI CCSGG 3 cut(s) 219, 776, 777
BsaAI YACGTR 1 cut(s) 560
BsaBI GATNNNNATC 1 cut(s) 855
BsaJI CCNNGG 6 cut(s) 310, 774, 775, 1156, 2142, 2143
BsaWI WCCGGW 1 cut(s) 1424
BsaXI ACNNNNNCTCC 4 cut(s) 819, 849, 2187, 2217
Bsc4I CCNNNNNNNGG 4 cut(s) 775, 824, 1851, 2192
Bse118I RCCGGY 1 cut(s) 1424
Bse1I ACTGG 2 cut(s) 703, 1064
Bse3DI GCAATG 3 cut(s) 247, 259, 2115
Bse8I GATNNNNATC 1 cut(s) 855
BseBI CCWGG 3 cut(s) 540, 690, 2144
BseDI CCNNGG 6 cut(s) 310, 774, 775, 1156, 2142, 2143
BseGI GGATG 2 cut(s) 643, 1615
BseJI GATNNNNATC 1 cut(s) 855
BseLI CCNNNNNNNGG 4 cut(s) 775, 824, 1851, 2192
BseMI GCAATG 3 cut(s) 247, 259, 2115
BseMII CTCAG 4 cut(s) 812, 996, 1194, 2004
BseNI ACTGG 2 cut(s) 703, 1064
BseXI GCAGC 4 cut(s) 76, 460, 700, 1326
Bsh1236I CGCG 4 cut(s) 470, 661, 684, 1467
BshFI GGCC 4 cut(s) 1142, 1928, 2027, 2185
BshTI ACCGGT 1 cut(s) 1424
BsiHKAI GWGCWC 2 cut(s) 478, 985
BsiHKCI CYCGRG 3 cut(s) 775, 978, 1847
BsiSI CCGG 3 cut(s) 218, 776, 1425
BslFI GGGAC 3 cut(s) 1828, 1968, 2064
BslI CCNNNNNNNGG 4 cut(s) 775, 824, 1851, 2192
BsmAI GTCTC 2 cut(s) 641, 1821
BsmFI GGGAC 3 cut(s) 1828, 1968, 2064
BsmI GAATGC 1 cut(s) 282
BsnI GGCC 4 cut(s) 1142, 1928, 2027, 2185
BsoBI CYCGRG 3 cut(s) 775, 978, 1847
Bsp1286I GDGCHC 2 cut(s) 478, 985
Bsp143I GATC 7 cut(s) 94, 535, 678, 685, 850, 856, 1803
Bsp19I CCATGG 1 cut(s) 1156
BspACI CCGC 4 cut(s) 468, 659, 672, 682
BspANI GGCC 4 cut(s) 1142, 1928, 2027, 2185
BspCNI CTCAG 4 cut(s) 811, 997, 1195, 2003
BspFNI CGCG 4 cut(s) 470, 661, 684, 1467
BspHI TCATGA 2 cut(s) 1231, 1576
BspLI GGNNCC 1 cut(s) 2052
BspMAI CTGCAG 2 cut(s) 94, 949
BspMI ACCTGC 1 cut(s) 619
BspOI GCTAGC 1 cut(s) 1676
BspPI GGATC 3 cut(s) 530, 673, 680
BspQI GCTCTTC 1 cut(s) 1325
BsrDI GCAATG 3 cut(s) 247, 259, 2115
BsrFI RCCGGY 1 cut(s) 1424
BsrI ACTGG 2 cut(s) 703, 1064
BssAI RCCGGY 1 cut(s) 1424
BssECI CCNNGG 6 cut(s) 310, 774, 775, 1156, 2142, 2143
BssMI GATC 7 cut(s) 94, 535, 678, 685, 850, 856, 1803
BssNAI GTATAC 1 cut(s) 891
BssSI CACGAG 1 cut(s) 1863
BssT1I CCWWGG 2 cut(s) 310, 1156
Bst1107I GTATAC 1 cut(s) 891
Bst2BI CACGAG 1 cut(s) 1863
Bst2UI CCWGG 3 cut(s) 540, 690, 2144
Bst4CI ACNGT 4 cut(s) 1606, 1667, 1684, 2179
Bst6I CTCTTC 1 cut(s) 1325
BstAPI GCANNNNNTGC 2 cut(s) 249, 731
BstBAI YACGTR 1 cut(s) 560
BstC8I GCNNGC 2 cut(s) 1140, 1674
BstDEI CTNAG 5 cut(s) 798, 1005, 1203, 1820, 1990
BstDSI CCRYGG 1 cut(s) 1156
BstF5I GGATG 2 cut(s) 643, 1615
BstFNI CGCG 4 cut(s) 470, 661, 684, 1467
BstHHI GCGC 1 cut(s) 205
BstKTI GATC 7 cut(s) 97, 538, 681, 688, 853, 859, 1806
BstMAI GTCTC 2 cut(s) 641, 1821
BstMBI GATC 7 cut(s) 94, 535, 678, 685, 850, 856, 1803
BstMWI GCNNNNNNNGC 8 cut(s) 249, 722, 731, 799, 1148, 1193, 2099, 2167
BstNI CCWGG 3 cut(s) 540, 690, 2144
BstNSI RCATGY 3 cut(s) 243, 490, 1348
BstSCI CCNGG 6 cut(s) 217, 538, 688, 774, 775, 2142
BstSFI CTRYAG 3 cut(s) 90, 945, 1191
BstSNI TACGTA 1 cut(s) 560
BstUI CGCG 4 cut(s) 470, 661, 684, 1467
BstV1I GCAGC 4 cut(s) 76, 460, 700, 1326
BstX2I RGATCY 2 cut(s) 535, 856
BstYI RGATCY 2 cut(s) 535, 856
BstZ17I GTATAC 1 cut(s) 891
BsuI GTATCC 1 cut(s) 2063
BsuRI GGCC 4 cut(s) 1142, 1928, 2027, 2185
BtgI CCRYGG 1 cut(s) 1156
BtsCI GGATG 2 cut(s) 643, 1615
BtsIMutI CAGTG 3 cut(s) 696, 1611, 2085
BveI ACCTGC 1 cut(s) 619
Cac8I GCNNGC 2 cut(s) 1140, 1674
CaiI CAGNNNCTG 2 cut(s) 626, 899
CciI TCATGA 2 cut(s) 1231, 1576
CfoI GCGC 1 cut(s) 205
Cfr10I RCCGGY 1 cut(s) 1424
Cfr13I GGNCC 2 cut(s) 1927, 2051
Cfr9I CCCGGG 1 cut(s) 775
Csp6I GTAC 7 cut(s) 11, 303, 656, 663, 669, 1022, 1463
CspAI ACCGGT 1 cut(s) 1424
CviQI GTAC 7 cut(s) 11, 303, 656, 663, 669, 1022, 1463
DdeI CTNAG 5 cut(s) 798, 1005, 1203, 1820, 1990
DpnI GATC 7 cut(s) 96, 537, 680, 687, 852, 858, 1805
DpnII GATC 7 cut(s) 94, 535, 678, 685, 850, 856, 1803
EaeI YGGCCR 3 cut(s) 1140, 2025, 2183
Eam1104I CTCTTC 1 cut(s) 1325
EarI CTCTTC 1 cut(s) 1325
Ecl136II GAGCTC 1 cut(s) 983
Eco105I TACGTA 1 cut(s) 560
Eco130I CCWWGG 2 cut(s) 310, 1156
Eco24I GRGCYC 1 cut(s) 985
Eco47I GGWCC 1 cut(s) 2051
Eco53kI GAGCTC 1 cut(s) 983
Eco57I CTGAAG 3 cut(s) 1128, 1916, 2109
Eco88I CYCGRG 3 cut(s) 775, 978, 1847
EcoICRI GAGCTC 1 cut(s) 983
EcoO109I RGGNCCY 1 cut(s) 2051
EcoRI GAATTC 2 cut(s) 154, 1265
EcoRII CCWGG 3 cut(s) 538, 688, 2142
EcoT14I CCWWGG 2 cut(s) 310, 1156
EcoT38I GRGCYC 1 cut(s) 985
ErhI CCWWGG 2 cut(s) 310, 1156
FalI AAGNNNNNCTT 4 cut(s) 825, 857, 1346, 1378
FaqI GGGAC 3 cut(s) 1828, 1968, 2064
FbaI TGATCA 2 cut(s) 850, 1803
FblI GTMKAC 1 cut(s) 890
Fnu4HI GCNGC 4 cut(s) 90, 449, 714, 1315
FokI GGATG 2 cut(s) 650, 1622
FriOI GRGCYC 1 cut(s) 985
Fsp4HI GCNGC 4 cut(s) 90, 449, 714, 1315
FspBI CTAG 6 cut(s) 651, 1197, 1214, 1392, 1673, 2055
GlaI GCGC 1 cut(s) 204
GluI GCNGC 4 cut(s) 90, 449, 714, 1315
HaeIII GGCC 4 cut(s) 1142, 1928, 2027, 2185
HapII CCGG 3 cut(s) 218, 776, 1425
HhaI GCGC 1 cut(s) 205
Hin6I GCGC 1 cut(s) 203
HinP1I GCGC 1 cut(s) 203
HincII GTYRAC 1 cut(s) 1278
HindII GTYRAC 1 cut(s) 1278
HindIII AAGCTT 1 cut(s) 1448
HpaII CCGG 3 cut(s) 218, 776, 1425
HphI GGTGA 3 cut(s) 56, 1124, 1439
Hpy166II GTNNAC 5 cut(s) 787, 818, 891, 1278, 2155
Hpy188I TCNGA 9 cut(s) 160, 325, 850, 883, 1179, 1285, 1324, 1880, 1993
Hpy8I GTNNAC 5 cut(s) 787, 818, 891, 1278, 2155
Hpy99I CGWCG 1 cut(s) 336
HpyCH4III ACNGT 4 cut(s) 1606, 1667, 1684, 2179
HpyCH4IV ACGT 1 cut(s) 559
HpyF10VI GCNNNNNNNGC 8 cut(s) 249, 722, 731, 799, 1148, 1193, 2099, 2167
HpyF3I CTNAG 5 cut(s) 798, 1005, 1203, 1820, 1990
HpySE526I ACGT 1 cut(s) 559
HspAI GCGC 1 cut(s) 203
Ksp22I TGATCA 2 cut(s) 850, 1803
Kzo9I GATC 7 cut(s) 94, 535, 678, 685, 850, 856, 1803
LguI GCTCTTC 1 cut(s) 1325
LmnI GCTCC 2 cut(s) 200, 224
Lsp1109I GCAGC 4 cut(s) 76, 460, 700, 1326
LweI GCATC 3 cut(s) 613, 628, 1200
MaeI CTAG 6 cut(s) 651, 1197, 1214, 1392, 1673, 2055
MaeII ACGT 1 cut(s) 559
MaeIII GTNAC 5 cut(s) 628, 692, 934, 1099, 1409
MalI GATC 7 cut(s) 96, 537, 680, 687, 852, 858, 1805
MboI GATC 7 cut(s) 94, 535, 678, 685, 850, 856, 1803
MfeI CAATTG 1 cut(s) 986
MflI RGATCY 2 cut(s) 535, 856
MhlI GDGCHC 2 cut(s) 478, 985
MlsI TGGCCA 2 cut(s) 1142, 2027
MluNI TGGCCA 2 cut(s) 1142, 2027
MlyI GAGTC 5 cut(s) 878, 1183, 1463, 1823, 1869
MmeI TCCRAC 1 cut(s) 906
Mox20I TGGCCA 2 cut(s) 1142, 2027
MscI TGGCCA 2 cut(s) 1142, 2027
MseI TTAA 2 cut(s) 1169, 1367
MslI CAYNNNNRTG 3 cut(s) 252, 1349, 1578
Msp20I TGGCCA 2 cut(s) 1142, 2027
MspA1I CMGCKG 1 cut(s) 1898
MspI CCGG 3 cut(s) 218, 776, 1425
MspR9I CCNGG 6 cut(s) 219, 540, 690, 776, 777, 2144
MunI CAATTG 1 cut(s) 986
Mva1269I GAATGC 1 cut(s) 282
MvaI CCWGG 3 cut(s) 540, 690, 2144
MvnI CGCG 4 cut(s) 470, 661, 684, 1467
MwoI GCNNNNNNNGC 8 cut(s) 249, 722, 731, 799, 1148, 1193, 2099, 2167
NciI CCSGG 3 cut(s) 219, 776, 777
NcoI CCATGG 1 cut(s) 1156
NdeII GATC 7 cut(s) 94, 535, 678, 685, 850, 856, 1803
NheI GCTAGC 1 cut(s) 1672
NlaIV GGNNCC 1 cut(s) 2052
NmuCI GTSAC 2 cut(s) 628, 934
NspI RCATGY 3 cut(s) 243, 490, 1348
PaeR7I CTCGAG 2 cut(s) 978, 1847
PagI TCATGA 2 cut(s) 1231, 1576
PasI CCCWGGG 1 cut(s) 2143
PciI ACATGT 2 cut(s) 486, 1344
PciSI GCTCTTC 1 cut(s) 1325
PcsI WCGNNNNNNNCGW 1 cut(s) 337
PctI GAATGC 1 cut(s) 282
PfeI GAWTC 8 cut(s) 134, 328, 745, 878, 916, 1180, 1986, 2113
PflMI CCANNNNNTGG 2 cut(s) 824, 2192
PfoI TCCNGGA 1 cut(s) 538
PinAI ACCGGT 1 cut(s) 1424
PkrI GCNGC 4 cut(s) 91, 450, 715, 1316
PleI GAGTC 5 cut(s) 878, 1182, 1463, 1822, 1869
PpsI GAGTC 5 cut(s) 878, 1182, 1463, 1822, 1869
Ppu21I YACGTR 1 cut(s) 560
PpuMI RGGWCCY 1 cut(s) 2051
PscI ACATGT 2 cut(s) 486, 1344
Psp124BI GAGCTC 1 cut(s) 985
Psp5II RGGWCCY 1 cut(s) 2051
Psp6I CCWGG 3 cut(s) 538, 688, 2142
PspGI CCWGG 3 cut(s) 538, 688, 2142
PspN4I GGNNCC 1 cut(s) 2052
PspPI GGNCC 2 cut(s) 1927, 2051
PspPPI RGGWCCY 1 cut(s) 2051
PstI CTGCAG 2 cut(s) 94, 949
PstNI CAGNNNCTG 2 cut(s) 626, 899
PsuI RGATCY 2 cut(s) 535, 856
PvuII CAGCTG 1 cut(s) 1898
RsaI GTAC 7 cut(s) 12, 304, 657, 664, 670, 1023, 1464
RsaNI GTAC 7 cut(s) 11, 303, 656, 663, 669, 1022, 1463
RseI CAYNNNNRTG 3 cut(s) 252, 1349, 1578
SacI GAGCTC 1 cut(s) 985
SapI GCTCTTC 1 cut(s) 1325
SaqAI TTAA 2 cut(s) 1169, 1367
SatI GCNGC 4 cut(s) 90, 449, 714, 1315
Sau3AI GATC 7 cut(s) 94, 535, 678, 685, 850, 856, 1803
Sau96I GGNCC 2 cut(s) 1927, 2051
SchI GAGTC 5 cut(s) 878, 1183, 1463, 1823, 1869
ScrFI CCNGG 6 cut(s) 219, 540, 690, 776, 777, 2144
SduI GDGCHC 2 cut(s) 478, 985
SfaNI GCATC 3 cut(s) 613, 628, 1200
SfcI CTRYAG 3 cut(s) 90, 945, 1191
Sfr274I CTCGAG 2 cut(s) 978, 1847
SinI GGWCC 1 cut(s) 2051
SlaI CTCGAG 2 cut(s) 978, 1847
SmaI CCCGGG 1 cut(s) 777
SmiMI CAYNNNNRTG 3 cut(s) 252, 1349, 1578
SmlI CTYRAG 6 cut(s) 117, 129, 442, 978, 1451, 1847
SmoI CTYRAG 6 cut(s) 117, 129, 442, 978, 1451, 1847
SnaBI TACGTA 1 cut(s) 560
SsiI CCGC 4 cut(s) 468, 659, 672, 682
SspMI CTAG 6 cut(s) 651, 1197, 1214, 1392, 1673, 2055
SstI GAGCTC 1 cut(s) 985
StyD4I CCNGG 6 cut(s) 217, 538, 688, 774, 775, 2142
StyI CCWWGG 2 cut(s) 310, 1156
TaaI ACNGT 4 cut(s) 1606, 1667, 1684, 2179
TaiI ACGT 1 cut(s) 562
TaqI TCGA 5 cut(s) 334, 340, 979, 1584, 1848
TfiI GAWTC 8 cut(s) 134, 328, 745, 878, 916, 1180, 1986, 2113
Tru1I TTAA 2 cut(s) 1169, 1367
Tru9I TTAA 2 cut(s) 1169, 1367
TscAI CASTG 3 cut(s) 703, 1611, 2092
TseFI GTSAC 2 cut(s) 628, 934
TseI GCWGC 4 cut(s) 89, 448, 713, 1314
Tsp45I GTSAC 2 cut(s) 628, 934
TspMI CCCGGG 1 cut(s) 775
TspRI CASTG 3 cut(s) 703, 1611, 2092
Van91I CCANNNNNTGG 2 cut(s) 824, 2192
VpaK11BI GGWCC 1 cut(s) 2051
XapI RAATTY 6 cut(s) 144, 154, 430, 508, 955, 1265
XceI RCATGY 3 cut(s) 243, 490, 1348
XcmI CCANNNNNNNNNTGG 1 cut(s) 2020
XhoI CTCGAG 2 cut(s) 978, 1847
XmaI CCCGGG 1 cut(s) 775
XmiI GTMKAC 1 cut(s) 890
XspI CTAG 6 cut(s) 651, 1197, 1214, 1392, 1673, 2055
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.