Rroxscaffold_5G00378810

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
59330452 .. 59332296
1845 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00378810.1

Sequence Viewer

Length: 705 bp
ATGTCACTTCTTATTCAAAATTGTAGTAAGGTTTTTAGAACCAGTGACGAGATTGAAGCAGACAAGCTTGAGAAAGGAATACGAGACTCTATAATGGAGATTGTTAAGAAAATAGAAGAAAAGGCAACCAGCAGGGAAGAAGAGTGCTTTGGCAGTGATTTTCTTGGCTTACGTTTGAAGGCTCATCATGACACCAATGACAACCAGAGGATTTCTATAGACGATTTGGTTGAAGAGTGCAAAGAAGTTGCGAGGGGAGTTAGACTGGGTAAAATCCTAGTTCCTGCAAATATTGAATTGGTTATCCCAACTCTAGCACTTCACCATGATCCTCAGTTATGGGGACAAGACGTGGCACTTTTCAAACCAAAGCGATTCTCTGAAGGCATTGCTGAAGCTACTAATGATAACATGGCTTCATTCTTAGCCTTTGGAAGGGGACCTCGAACGTGTGTGGGATTCAACTTTGCCTCTAATGAAGCAAAGATTGCTCTGTCAATGATTCTACAACGCTACTCATTTACCCTCTCCCCGGGTTATGTCCACTCACCTTTTCAGTTTCTTACACTTCGTCCACAATATGGAGTTCAAATGCTTGAGAGTTCAGCAGAGAGGAAGAGTTCCAGCAGTGGCATGATTTACGGGTTTTGGGTTAAGGTTGGTTGGGAAGAATTGGTGGCTAGGGATTCGAGAGATAGAGCTTGA

Protein Analysis

234

Amino Acids

26.39

Weight (kDa)

6.01

Isoelectric Point (pI)

42.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 82 - 180 2.3e-20 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000078)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g15240 FvH4_3g15270 FvH4_3g15280 FvH4_3g32750 FvH4_3g32760 FvH4_3g32760 FvH4_3g32880 FvH4_4g08190 FvH4_4g29160 FvH4_4g29370 FvH4_4g29400 FvH4_4g29420 FvH4_4g29420 FvH4_4g29420 FvH4_4g29430 FvH4_4g29440 FvH4_4g29450 FvH4_4g29450 FvH4_4g29450 FvH4_4g29460 FvH4_4g29461 FvH4_4g29462 FvH4_4g29463 FvH4_4g29480 FvH4_4g29481 FvH4_4g29482 FvH4_4g29483 FvH4_4g29484 FvH4_6g26720 FvH4_6g26720
malus_domestica MD00G1065200.v1.1 MD06G1145800.v1.1 MD06G1146000.v1.1 MD06G1146700.v1.1 MD13G1031000.v1.1 MD13G1033900.v1.1 MD13G1057000.v1.1 MD13G1057100.v1.1 MD13G1057200.v1.1 MD13G1057400.v1.1 MD13G1057800.v1.1 MD13G1058000.v1.1 MD13G1058100.v1.1 MD13G1058200.v1.1 MD13G1058300.v1.1 MD13G1058500.v1.1 MD13G1058600.v1.1 MD13G1058700.v1.1 MD16G1035700.v1.1 MD16G1056400.v1.1 MD16G1056600.v1.1 MD16G1056700.v1.1 MD16G1056900.v1.1 MD16G1058100.v1.1
prunus_persica Prupe.1G291100_v2.0.a1 Prupe.1G291200_v2.0.a1 Prupe.1G291500_v2.0.a1 Prupe.1G291600_v2.0.a1 Prupe.1G291700_v2.0.a1 Prupe.1G291800_v2.0.a1 Prupe.1G291900_v2.0.a1 Prupe.1G292000_v2.0.a1 Prupe.1G292100_v2.0.a1 Prupe.1G292400_v2.0.a1 Prupe.1G292500_v2.0.a1 Prupe.1G292600_v2.0.a1 Prupe.1G292700_v2.0.a1 Prupe.1G292800_v2.0.a1 Prupe.1G296000_v2.0.a1 Prupe.1G296100_v2.0.a1 Prupe.1G296300_v2.0.a1 Prupe.1G296600_v2.0.a1 Prupe.1G296900_v2.0.a1 Prupe.1G534600_v2.0.a1 Prupe.5G046700_v2.0.a1 Prupe.8G021800_v2.0.a1 Prupe.8G026400_v2.0.a1
pyrus_communis pycom06g13510 pycom06g13530 pycom06g13540 pycom06g13570 pycom06g13590 pycom06g13620 pycom13g02710 pycom13g02930 pycom13g05100 pycom13g05110 pycom13g05140 pycom13g05160 pycom13g05170 pycom13g05190 pycom13g05200 pycom13g05210 pycom13g05220 pycom16g03060 pycom16g04940 pycom16g04960 pycom16g04990 pycom16g05000 pycom16g05080
rosa_chinensis RchiOBHm_Chr1g0337981 RchiOBHm_Chr1g0337991 RchiOBHm_Chr1g0339431 RchiOBHm_Chr4g0402401 RchiOBHm_Chr4g0420571 RchiOBHm_Chr4g0420601 RchiOBHm_Chr4g0420611 RchiOBHm_Chr4g0420621 RchiOBHm_Chr4g0420631 RchiOBHm_Chr4g0437211 RchiOBHm_Chr4g0437221 RchiOBHm_Chr4g0437251 RchiOBHm_Chr4g0437431 RchiOBHm_Chr4g0437441 RchiOBHm_Chr4g0437491 RchiOBHm_Chr4g0437501 RchiOBHm_Chr4g0437511 RchiOBHm_Chr4g0437521 RchiOBHm_Chr4g0437531 RchiOBHm_Chr4g0437541 RchiOBHm_Chr4g0437551 RchiOBHm_Chr4g0437591 RchiOBHm_Chr4g0437631 RchiOBHm_Chr4g0437641 RchiOBHm_Chr4g0437671 RchiOBHm_Chr4g0437681 RchiOBHm_Chr4g0437711 RchiOBHm_Chr4g0437731 RchiOBHm_Chr4g0437741 RchiOBHm_Chr4g0437751 RchiOBHm_Chr5g0025681 RchiOBHm_Chr5g0025711 RchiOBHm_Chr5g0025731 RchiOBHm_Chr5g0059841 RchiOBHm_Chr6g0272651
rosa_laevigata RLG00000006420 RLG00000006421 RLG00000006423 RLG00000006426 RLG00000006427 RLG00000006428 RLG00000006429 RLG00000006431 RLG00000006433 RLG00000006434 RLG00000006435 RLG00000006436 RLG00000006437 RLG00000006455 RLG00000007746 RLG00000007747 RLG00000007748 RLG00000007749 RLG00000007750 RLG00000009091 RLG00000009092 RLG00000009095 RLG00000009096 RLG00000017856 RLG00000028094 RLG00000029230 RLG00000029231 RLG00000030008 RLG00000032859 RLG00000032860 RLG00000032861 RLG00000032865 RLG00000032868 RLG00000035332
rosa_multiflora Rmu_co7986016.1_g000001 Rmu_co8226539.1_g000001 Rmu_co8349613.1_g000001 Rmu_sc0000272.1_g000014 Rmu_sc0000591.1_g000003 Rmu_sc0000613.1_g000013 Rmu_sc0001629.1_g000022 Rmu_sc0001629.1_g000025 Rmu_sc0002131.1_g000027 Rmu_sc0002137.1_g000006 Rmu_sc0002137.1_g000014 Rmu_sc0002137.1_g000019 Rmu_sc0002472.1_g000002 Rmu_sc0002472.1_g000012 Rmu_sc0002472.1_g000018 Rmu_sc0002472.1_g000034 Rmu_sc0002472.1_g000040 Rmu_sc0002472.1_g000051 Rmu_sc0002638.1_g000005 Rmu_sc0002638.1_g000010 Rmu_sc0002638.1_g000025 Rmu_sc0002638.1_g000030 Rmu_sc0002638.1_g000037 Rmu_sc0002638.1_g000042 Rmu_sc0004339.1_g000019 Rmu_sc0005580.1_g000013 Rmu_sc0006617.1_g000002 Rmu_sc0006986.1_g000003 Rmu_sc0006986.1_g000017 Rmu_sc0008352.1_g000001 Rmu_sc0008352.1_g000002 Rmu_sc0009431.1_g000011 Rmu_sc0011080.1_g000003 Rmu_sc0011080.1_g000006 Rmu_sc0016549.1_g000001 Rmu_sc0016549.1_g000002 Rmu_sc0017154.1_g000001 Rmu_sc0017155.1_g000001 Rmu_sc0028438.1_g000001 Rmu_sc0041413.1_g000001 Rmu_ssc0000330.1_g000022
rosa_roxburghii Rroxscaffold_1G00020750 Rroxscaffold_1G00053460 Rroxscaffold_1G00054250 Rroxscaffold_1G00054260 Rroxscaffold_1G00054270 Rroxscaffold_1G00054290 Rroxscaffold_2G00120210 Rroxscaffold_4G00313460 Rroxscaffold_4G00313470 Rroxscaffold_4G00330630 Rroxscaffold_5G00347070 Rroxscaffold_5G00347110 Rroxscaffold_5G00378670 Rroxscaffold_5G00378690 Rroxscaffold_5G00378720 Rroxscaffold_5G00378730 Rroxscaffold_5G00378740 Rroxscaffold_5G00378760 Rroxscaffold_5G00378780 Rroxscaffold_5G00378790 Rroxscaffold_5G00378800 Rroxscaffold_5G00378810 Rroxscaffold_5G00378820 Rroxscaffold_5G00378840 Rroxscaffold_5G00378860 Rroxscaffold_5G00378870 Rroxscaffold_7G00196060
rosa_rugosa Rorug01G0142200.1 Rorug01G0332800 Rorug02G0012200 Rorug02G0248300 Rorug03G0219000 Rorug03G0219100 Rorug03G0219200 Rorug04G0035100 Rorug04G0301500 Rorug04G0301500 Rorug04G0301700 Rorug04G0301800 Rorug04G0301800 Rorug04G0301900 Rorug04G0302000 Rorug04G0302500 Rorug04G0302600 Rorug04G0302700 Rorug04G0302800 Rorug04G0302900 Rorug04G0303000 Rorug04G0303000 Rorug04G0303100 Rorug04G0303200 Rorug04G0303300 Rorug04G0303400 Rorug04G0303500 Rorug04G0303500 Rorug05G0087800 Rorug05G0088200 Rorug05G0326300 Rorug06G0173000
rosa_samantha Rh2AG222400 Rh4DG224800 Rh4DG359900 Rh4DG360000 Rh4DG360100 Rh4DG360200 Rh4DG360300 Rh4DG360500 Rh4DG360700 Rh4DG360800 Rh4DG360900 Rh4DG361000 Rh5DG177900 Rh5DG178200 Rh5DG178400 Rh6CG187800
rosa_wichuraiana Rw1G013580 Rw4G009020 Rw4G019580 Rw4G030990 Rw4G031000 Rw4G031220 Rw4G031230 Rw4G031240 Rw4G031250 Rw4G031260 Rw4G031270 Rw4G031280 Rw4G031290 Rw4G031310 Rw4G031320 Rw4G031330 Rw4G031340 Rw4G031360 Rw4G031370 Rw5G016310 Rw5G016320 Rw5G016330 Rw5G036760 Rw6G016090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 581
AclWI GGATC 1 cut(s) 323
AcuI CTGAAG 2 cut(s) 402, 414
AfiI CCNNNNNNNGG 3 cut(s) 435, 532, 581
AflIII ACRYGT 1 cut(s) 449
AgsI TTSAA 8 cut(s) 17, 56, 178, 233, 296, 364, 463, 590
AjiI CACGTC 1 cut(s) 352
AjuI GAANNNNNNNTTGG 2 cut(s) 132, 164
AluBI AGCT 3 cut(s) 67, 398, 701
AluI AGCT 3 cut(s) 67, 398, 701
Alw26I GTCTC 1 cut(s) 78
AlwI GGATC 1 cut(s) 323
Ama87I CYCGRG 1 cut(s) 532
AspS9I GGNCC 1 cut(s) 440
AsuC2I CCSGG 2 cut(s) 533, 534
AsuHPI GGTGA 2 cut(s) 314, 540
AvaI CYCGRG 1 cut(s) 532
AvaII GGWCC 1 cut(s) 440
BcnI CCSGG 2 cut(s) 533, 534
BcoDI GTCTC 1 cut(s) 78
BfaI CTAG 3 cut(s) 278, 314, 681
BfmI CTRYAG 1 cut(s) 216
Bme1390I CCNGG 2 cut(s) 533, 534
Bme18I GGWCC 1 cut(s) 440
BmeT110I CYCGRG 1 cut(s) 532
BmgBI CACGTC 1 cut(s) 352
BmgT120I GGNCC 1 cut(s) 440
BmiI GGNNCC 1 cut(s) 441
BmrFI CCNGG 2 cut(s) 533, 534
BmrI ACTGGG 1 cut(s) 275
BmuI ACTGGG 1 cut(s) 275
BpuEI CTTGAG 2 cut(s) 89, 617
BpuMI CCSGG 2 cut(s) 533, 534
BsaJI CCNNGG 2 cut(s) 531, 532
Bsc4I CCNNNNNNNGG 3 cut(s) 435, 532, 581
Bse1I ACTGG 2 cut(s) 42, 270
Bse3DI GCAATG 1 cut(s) 387
BseDI CCNNGG 2 cut(s) 531, 532
BseLI CCNNNNNNNGG 3 cut(s) 435, 532, 581
BseMI GCAATG 1 cut(s) 387
BseMII CTCAG 1 cut(s) 347
BseNI ACTGG 2 cut(s) 42, 270
BsiHKCI CYCGRG 1 cut(s) 532
BsiSI CCGG 1 cut(s) 533
BslFI GGGAC 2 cut(s) 357, 453
BslI CCNNNNNNNGG 3 cut(s) 435, 532, 581
BsmAI GTCTC 1 cut(s) 78
BsmFI GGGAC 2 cut(s) 357, 453
BsoBI CYCGRG 1 cut(s) 532
Bsp143I GATC 1 cut(s) 328
BspCNI CTCAG 1 cut(s) 346
BspHI TCATGA 1 cut(s) 187
BspLI GGNNCC 1 cut(s) 441
BspPI GGATC 1 cut(s) 323
BsrDI GCAATG 1 cut(s) 387
BsrI ACTGG 2 cut(s) 42, 270
BssECI CCNNGG 2 cut(s) 531, 532
BssMI GATC 1 cut(s) 328
Bst6I CTCTTC 3 cut(s) 135, 228, 611
BstAPI GCANNNNNTGC 1 cut(s) 488
BstDEI CTNAG 2 cut(s) 333, 424
BstENI CCTNNNNNAGG 1 cut(s) 433
BstKTI GATC 1 cut(s) 331
BstMAI GTCTC 1 cut(s) 78
BstMBI GATC 1 cut(s) 328
BstMWI GCNNNNNNNGC 1 cut(s) 488
BstSCI CCNGG 2 cut(s) 531, 532
BstSFI CTRYAG 1 cut(s) 216
BtrI CACGTC 1 cut(s) 352
BtsI GCAGTG 2 cut(s) 160, 634
BtsIMutI CAGTG 3 cut(s) 49, 160, 634
CciI TCATGA 1 cut(s) 187
Cfr13I GGNCC 1 cut(s) 440
Cfr9I CCCGGG 1 cut(s) 532
CviAII CATG 4 cut(s) 188, 326, 412, 634
CviJI RGCY 8 cut(s) 67, 168, 182, 398, 416, 428, 680, 701
CviKI_1 RGCY 8 cut(s) 67, 168, 182, 398, 416, 428, 680, 701
DdeI CTNAG 2 cut(s) 333, 424
DpnI GATC 1 cut(s) 330
DpnII GATC 1 cut(s) 328
Eam1104I CTCTTC 3 cut(s) 135, 228, 611
EarI CTCTTC 3 cut(s) 135, 228, 611
Eco47I GGWCC 1 cut(s) 440
Eco57I CTGAAG 2 cut(s) 402, 414
Eco88I CYCGRG 1 cut(s) 532
EcoNI CCTNNNNNAGG 1 cut(s) 433
EcoO109I RGGNCCY 1 cut(s) 440
FaeI CATG 4 cut(s) 191, 329, 415, 637
FaiI YATR 9 cut(s) 92, 189, 218, 327, 340, 413, 540, 582, 635
FaqI GGGAC 2 cut(s) 357, 453
FatI CATG 4 cut(s) 187, 325, 411, 633
FspBI CTAG 3 cut(s) 278, 314, 681
HapII CCGG 1 cut(s) 533
Hin1II CATG 4 cut(s) 191, 329, 415, 637
HindIII AAGCTT 1 cut(s) 65
HinfI GANTC 5 cut(s) 86, 375, 459, 502, 686
HpaII CCGG 1 cut(s) 533
HphI GGTGA 2 cut(s) 314, 540
Hpy166II GTNNAC 2 cut(s) 544, 575
Hpy188I TCNGA 1 cut(s) 382
Hpy188III TCNNGA 2 cut(s) 188, 690
Hpy8I GTNNAC 2 cut(s) 544, 575
HpyAV CCTTC 3 cut(s) 172, 377, 429
HpyCH4IV ACGT 3 cut(s) 172, 351, 449
HpyCH4V TGCA 2 cut(s) 240, 287
HpyF10VI GCNNNNNNNGC 1 cut(s) 488
HpyF3I CTNAG 2 cut(s) 333, 424
HpySE526I ACGT 3 cut(s) 172, 351, 449
Hsp92II CATG 4 cut(s) 191, 329, 415, 637
Kzo9I GATC 1 cut(s) 328
LpnPI CCDG 8 cut(s) 55, 118, 142, 218, 251, 297, 546, 637
MaeI CTAG 3 cut(s) 278, 314, 681
MaeII ACGT 3 cut(s) 172, 351, 449
MaeIII GTNAC 2 cut(s) 3, 44
MalI GATC 1 cut(s) 330
MboI GATC 1 cut(s) 328
MboII GAAGA 6 cut(s) 128, 149, 152, 245, 628, 680
MluCI AATT 3 cut(s) 19, 296, 671
MlyI GAGTC 1 cut(s) 80
MnlI CCTC 7 cut(s) 201, 246, 342, 453, 481, 536, 606
MseI TTAA 2 cut(s) 105, 654
MspI CCGG 1 cut(s) 533
MspR9I CCNGG 2 cut(s) 533, 534
MwoI GCNNNNNNNGC 1 cut(s) 488
NciI CCSGG 2 cut(s) 533, 534
NdeII GATC 1 cut(s) 328
NlaIII CATG 4 cut(s) 191, 329, 415, 637
NlaIV GGNNCC 1 cut(s) 441
NmuCI GTSAC 2 cut(s) 3, 44
PagI TCATGA 1 cut(s) 187
PfeI GAWTC 4 cut(s) 375, 459, 502, 686
PflMI CCANNNNNTGG 1 cut(s) 581
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
PpuMI RGGWCCY 1 cut(s) 440
Psp5II RGGWCCY 1 cut(s) 440
PspN4I GGNNCC 1 cut(s) 441
PspPI GGNCC 1 cut(s) 440
PspPPI RGGWCCY 1 cut(s) 440
SaqAI TTAA 2 cut(s) 105, 654
Sau3AI GATC 1 cut(s) 328
Sau96I GGNCC 1 cut(s) 440
SchI GAGTC 1 cut(s) 80
ScrFI CCNGG 2 cut(s) 533, 534
SfcI CTRYAG 1 cut(s) 216
SinI GGWCC 1 cut(s) 440
SmaI CCCGGG 1 cut(s) 534
SmlI CTYRAG 2 cut(s) 68, 596
SmoI CTYRAG 2 cut(s) 68, 596
Sse9I AATT 3 cut(s) 19, 296, 671
SspI AATATT 1 cut(s) 292
SspMI CTAG 3 cut(s) 278, 314, 681
StyD4I CCNGG 2 cut(s) 531, 532
TaiI ACGT 3 cut(s) 175, 354, 452
TaqI TCGA 2 cut(s) 445, 689
TasI AATT 3 cut(s) 19, 296, 671
TfiI GAWTC 4 cut(s) 375, 459, 502, 686
Tru1I TTAA 2 cut(s) 105, 654
Tru9I TTAA 2 cut(s) 105, 654
TscAI CASTG 3 cut(s) 49, 160, 634
TseFI GTSAC 2 cut(s) 3, 44
Tsp45I GTSAC 2 cut(s) 3, 44
TspDTI ATGAA 2 cut(s) 408, 492
TspMI CCCGGG 1 cut(s) 532
TspRI CASTG 3 cut(s) 49, 160, 634
Van91I CCANNNNNTGG 1 cut(s) 581
VpaK11BI GGWCC 1 cut(s) 440
XagI CCTNNNNNAGG 1 cut(s) 433
XmaI CCCGGG 1 cut(s) 532
XspI CTAG 3 cut(s) 278, 314, 681
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.