Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004339.1

Orthogroup ID

OG0000078

Physical Location & Seq

Genomic Coordinates Forward (+)

64463 .. 64933

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004339.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atgagactaaggttatatcctcctgttgtttccatcataaggacagttgaaaaggaagttacactcggaagactcattgttcctactaatgttgaattgcacgtcccaaacctagtatttcaccatgatcctcaactctggggagaagatgtgcatcttttcaaaccagagagattctcagaaggtgttgctaaagctactaaccataacatggtcgtgtacttacccttcggaatgggacctagaaactgtgtggggttcaagtttgccaccactgaagcaaagattgctctatcgatgattctgcaacgctactccttcaccctttcccctggttatgtccactcaccttttaggtgcattacagttcgtccgcaacatggagttcaagtaatgctacaccatctgtcaactgtggagaccaaaattgccagaaaatctttcatttcagatagtacaatccatgaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0008395 GO:0009719 GO:0009725 GO:0009741 GO:0010033 GO:0010268 GO:0010817 GO:0014070 GO:0016128 GO:0016131 GO:0016491 GO:0033993 GO:0042221 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00905 map00905

Pfam Domains

Protein Families

p450

Protein Analysis

156

Amino Acids

17.79

Weight (kDa)

9.47

Isoelectric Point (pI)

31.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000078)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15240 FvH4_3g15270 FvH4_3g15280 FvH4_3g32750 FvH4_3g32760 FvH4_3g32760 FvH4_3g32880 FvH4_4g08190 FvH4_4g29160 FvH4_4g29370 FvH4_4g29400 FvH4_4g29420 FvH4_4g29420 FvH4_4g29420 FvH4_4g29430 FvH4_4g29440 FvH4_4g29450 FvH4_4g29450 FvH4_4g29450 FvH4_4g29460 FvH4_4g29461 FvH4_4g29462 FvH4_4g29463 FvH4_4g29480 FvH4_4g29481 FvH4_4g29482 FvH4_4g29483 FvH4_4g29484 FvH4_6g26720 FvH4_6g26720
malus_domestica	MD00G1065200.v1.1 MD06G1145800.v1.1 MD06G1146000.v1.1 MD06G1146700.v1.1 MD13G1031000.v1.1 MD13G1033900.v1.1 MD13G1057000.v1.1 MD13G1057100.v1.1 MD13G1057200.v1.1 MD13G1057400.v1.1 MD13G1057800.v1.1 MD13G1058000.v1.1 MD13G1058100.v1.1 MD13G1058200.v1.1 MD13G1058300.v1.1 MD13G1058500.v1.1 MD13G1058600.v1.1 MD13G1058700.v1.1 MD16G1035700.v1.1 MD16G1056400.v1.1 MD16G1056600.v1.1 MD16G1056700.v1.1 MD16G1056900.v1.1 MD16G1058100.v1.1
prunus_persica	Prupe.1G291100_v2.0.a1 Prupe.1G291200_v2.0.a1 Prupe.1G291500_v2.0.a1 Prupe.1G291600_v2.0.a1 Prupe.1G291700_v2.0.a1 Prupe.1G291800_v2.0.a1 Prupe.1G291900_v2.0.a1 Prupe.1G292000_v2.0.a1 Prupe.1G292100_v2.0.a1 Prupe.1G292400_v2.0.a1 Prupe.1G292500_v2.0.a1 Prupe.1G292600_v2.0.a1 Prupe.1G292700_v2.0.a1 Prupe.1G292800_v2.0.a1 Prupe.1G296000_v2.0.a1 Prupe.1G296100_v2.0.a1 Prupe.1G296300_v2.0.a1 Prupe.1G296600_v2.0.a1 Prupe.1G296900_v2.0.a1 Prupe.1G534600_v2.0.a1 Prupe.5G046700_v2.0.a1 Prupe.8G021800_v2.0.a1 Prupe.8G026400_v2.0.a1
pyrus_communis	pycom06g13510 pycom06g13530 pycom06g13540 pycom06g13570 pycom06g13590 pycom06g13620 pycom13g02710 pycom13g02930 pycom13g05100 pycom13g05110 pycom13g05140 pycom13g05160 pycom13g05170 pycom13g05190 pycom13g05200 pycom13g05210 pycom13g05220 pycom16g03060 pycom16g04940 pycom16g04960 pycom16g04990 pycom16g05000 pycom16g05080
rosa_chinensis	RchiOBHm_Chr1g0337981 RchiOBHm_Chr1g0337991 RchiOBHm_Chr1g0339431 RchiOBHm_Chr4g0402401 RchiOBHm_Chr4g0420571 RchiOBHm_Chr4g0420601 RchiOBHm_Chr4g0420611 RchiOBHm_Chr4g0420621 RchiOBHm_Chr4g0420631 RchiOBHm_Chr4g0437211 RchiOBHm_Chr4g0437221 RchiOBHm_Chr4g0437251 RchiOBHm_Chr4g0437431 RchiOBHm_Chr4g0437441 RchiOBHm_Chr4g0437491 RchiOBHm_Chr4g0437501 RchiOBHm_Chr4g0437511 RchiOBHm_Chr4g0437521 RchiOBHm_Chr4g0437531 RchiOBHm_Chr4g0437541 RchiOBHm_Chr4g0437551 RchiOBHm_Chr4g0437591 RchiOBHm_Chr4g0437631 RchiOBHm_Chr4g0437641 RchiOBHm_Chr4g0437671 RchiOBHm_Chr4g0437681 RchiOBHm_Chr4g0437711 RchiOBHm_Chr4g0437731 RchiOBHm_Chr4g0437741 RchiOBHm_Chr4g0437751 RchiOBHm_Chr5g0025681 RchiOBHm_Chr5g0025711 RchiOBHm_Chr5g0025731 RchiOBHm_Chr5g0059841 RchiOBHm_Chr6g0272651
rosa_laevigata	RLG00000006420 RLG00000006421 RLG00000006423 RLG00000006426 RLG00000006427 RLG00000006428 RLG00000006429 RLG00000006431 RLG00000006433 RLG00000006434 RLG00000006435 RLG00000006436 RLG00000006437 RLG00000006455 RLG00000007746 RLG00000007747 RLG00000007748 RLG00000007749 RLG00000007750 RLG00000009091 RLG00000009092 RLG00000009095 RLG00000009096 RLG00000017856 RLG00000028094 RLG00000029230 RLG00000029231 RLG00000030008 RLG00000032859 RLG00000032860 RLG00000032861 RLG00000032865 RLG00000032868 RLG00000035332
rosa_multiflora	Rmu_co7986016.1_g000001 Rmu_co8226539.1_g000001 Rmu_co8349613.1_g000001 Rmu_sc0000272.1_g000014 Rmu_sc0000591.1_g000003 Rmu_sc0000613.1_g000013 Rmu_sc0001629.1_g000022 Rmu_sc0001629.1_g000025 Rmu_sc0002131.1_g000027 Rmu_sc0002137.1_g000006 Rmu_sc0002137.1_g000014 Rmu_sc0002137.1_g000019 Rmu_sc0002472.1_g000002 Rmu_sc0002472.1_g000012 Rmu_sc0002472.1_g000018 Rmu_sc0002472.1_g000034 Rmu_sc0002472.1_g000040 Rmu_sc0002472.1_g000051 Rmu_sc0002638.1_g000005 Rmu_sc0002638.1_g000010 Rmu_sc0002638.1_g000025 Rmu_sc0002638.1_g000030 Rmu_sc0002638.1_g000037 Rmu_sc0002638.1_g000042 Rmu_sc0004339.1_g000019 Rmu_sc0005580.1_g000013 Rmu_sc0006617.1_g000002 Rmu_sc0006986.1_g000003 Rmu_sc0006986.1_g000017 Rmu_sc0008352.1_g000001 Rmu_sc0008352.1_g000002 Rmu_sc0009431.1_g000011 Rmu_sc0011080.1_g000003 Rmu_sc0011080.1_g000006 Rmu_sc0016549.1_g000001 Rmu_sc0016549.1_g000002 Rmu_sc0017154.1_g000001 Rmu_sc0017155.1_g000001 Rmu_sc0028438.1_g000001 Rmu_sc0041413.1_g000001 Rmu_ssc0000330.1_g000022
rosa_roxburghii	Rroxscaffold_1G00020750 Rroxscaffold_1G00053460 Rroxscaffold_1G00054250 Rroxscaffold_1G00054260 Rroxscaffold_1G00054270 Rroxscaffold_1G00054290 Rroxscaffold_2G00120210 Rroxscaffold_4G00313460 Rroxscaffold_4G00313470 Rroxscaffold_4G00330630 Rroxscaffold_5G00347070 Rroxscaffold_5G00347110 Rroxscaffold_5G00378670 Rroxscaffold_5G00378690 Rroxscaffold_5G00378720 Rroxscaffold_5G00378730 Rroxscaffold_5G00378740 Rroxscaffold_5G00378760 Rroxscaffold_5G00378780 Rroxscaffold_5G00378790 Rroxscaffold_5G00378800 Rroxscaffold_5G00378810 Rroxscaffold_5G00378820 Rroxscaffold_5G00378840 Rroxscaffold_5G00378860 Rroxscaffold_5G00378870 Rroxscaffold_7G00196060
rosa_rugosa	Rorug01G0142200.1 Rorug01G0332800 Rorug02G0012200 Rorug02G0248300 Rorug03G0219000 Rorug03G0219100 Rorug03G0219200 Rorug04G0035100 Rorug04G0301500 Rorug04G0301500 Rorug04G0301700 Rorug04G0301800 Rorug04G0301800 Rorug04G0301900 Rorug04G0302000 Rorug04G0302500 Rorug04G0302600 Rorug04G0302700 Rorug04G0302800 Rorug04G0302900 Rorug04G0303000 Rorug04G0303000 Rorug04G0303100 Rorug04G0303200 Rorug04G0303300 Rorug04G0303400 Rorug04G0303500 Rorug04G0303500 Rorug05G0087800 Rorug05G0088200 Rorug05G0326300 Rorug06G0173000
rosa_samantha	Rh2AG222400 Rh4DG224800 Rh4DG359900 Rh4DG360000 Rh4DG360100 Rh4DG360200 Rh4DG360300 Rh4DG360500 Rh4DG360700 Rh4DG360800 Rh4DG360900 Rh4DG361000 Rh5DG177900 Rh5DG178200 Rh5DG178400 Rh6CG187800
rosa_wichuraiana	Rw1G013580 Rw4G009020 Rw4G019580 Rw4G030990 Rw4G031000 Rw4G031220 Rw4G031230 Rw4G031240 Rw4G031250 Rw4G031260 Rw4G031270 Rw4G031280 Rw4G031290 Rw4G031310 Rw4G031320 Rw4G031330 Rw4G031340 Rw4G031360 Rw4G031370 Rw5G016310 Rw5G016320 Rw5G016330 Rw5G036760 Rw6G016090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	211
AciI	CCGC	1 cut(s)	374
AclWI	GGATC	1 cut(s)	122
AcuI	CTGAAG	1 cut(s)	297
AfaI	GTAC	2 cut(s)	221, 457
AfiI	CCNNNNNNNGG	3 cut(s)	39, 211, 380
AgsI	TTSAA	5 cut(s)	50, 95, 163, 262, 389
AjiI	CACGTC	1 cut(s)	103
AjnI	CCWGG	1 cut(s)	331
AluBI	AGCT	1 cut(s)	197
AluI	AGCT	1 cut(s)	197
Alw26I	GTCTC	1 cut(s)	413
AlwI	GGATC	1 cut(s)	122
AspS9I	GGNCC	1 cut(s)	239
AsuHPI	GGTGA	3 cut(s)	113, 313, 339
AvaII	GGWCC	1 cut(s)	239
BarI	GAAGNNNNNNTAC	2 cut(s)	212, 244
BbsI	GAAGAC	1 cut(s)	76
BccI	CCATC	2 cut(s)	41, 411
BcgI	CGANNNNNNTGC	2 cut(s)	286, 320
BciT130I	CCWGG	1 cut(s)	333
BcoDI	GTCTC	1 cut(s)	413
BfaI	CTAG	2 cut(s)	113, 243
Bme1390I	CCNGG	1 cut(s)	333
Bme18I	GGWCC	1 cut(s)	239
BmgBI	CACGTC	1 cut(s)	103
BmgT120I	GGNCC	1 cut(s)	239
BmiI	GGNNCC	1 cut(s)	240
BmrFI	CCNGG	1 cut(s)	333
BmsI	GCATC	1 cut(s)	163
BpiI	GAAGAC	1 cut(s)	76
BplI	GAGNNNNNCTC	2 cut(s)	161, 193
Bsa29I	ATCGAT	1 cut(s)	296
BsaBI	GATNNNNATC	1 cut(s)	153
BsaI	GGTCTC	1 cut(s)	413
BsaJI	CCNNGG	1 cut(s)	331
BsaXI	ACNNNNNCTCC	4 cut(s)	135, 165, 375, 405
Bsc4I	CCNNNNNNNGG	3 cut(s)	39, 211, 380
Bse8I	GATNNNNATC	1 cut(s)	153
BseBI	CCWGG	1 cut(s)	333
BseCI	ATCGAT	1 cut(s)	296
BseDI	CCNNGG	1 cut(s)	331
BseJI	GATNNNNATC	1 cut(s)	153
BseLI	CCNNNNNNNGG	3 cut(s)	39, 211, 380
BseMII	CTCAG	1 cut(s)	192
BshVI	ATCGAT	1 cut(s)	296
BslFI	GGGAC	2 cut(s)	89, 252
BslI	CCNNNNNNNGG	3 cut(s)	39, 211, 380
BsmAI	GTCTC	1 cut(s)	413
BsmFI	GGGAC	2 cut(s)	89, 252
Bso31I	GGTCTC	1 cut(s)	413
Bsp143I	GATC	1 cut(s)	127
BspACI	CCGC	1 cut(s)	374
BspCNI	CTCAG	1 cut(s)	191
BspDI	ATCGAT	1 cut(s)	296
BspLI	GGNNCC	1 cut(s)	240
BspPI	GGATC	1 cut(s)	122
BspTNI	GGTCTC	1 cut(s)	413
BssECI	CCNNGG	1 cut(s)	331
BssMI	GATC	1 cut(s)	127
Bst2UI	CCWGG	1 cut(s)	333
Bst4CI	ACNGT	4 cut(s)	46, 251, 367, 415
BstAPI	GCANNNNNTGC	1 cut(s)	287
BstDEI	CTNAG	2 cut(s)	8, 178
BstKTI	GATC	1 cut(s)	130
BstMAI	GTCTC	1 cut(s)	413
BstMBI	GATC	1 cut(s)	127
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstNI	CCWGG	1 cut(s)	333
BstSCI	CCNGG	1 cut(s)	331
BstV2I	GAAGAC	1 cut(s)	76
Bsu15I	ATCGAT	1 cut(s)	296
BsuTUI	ATCGAT	1 cut(s)	296
BtrI	CACGTC	1 cut(s)	103
BtsIMutI	CAGTG	1 cut(s)	273
Cfr13I	GGNCC	1 cut(s)	239
ClaI	ATCGAT	1 cut(s)	296
Csp6I	GTAC	2 cut(s)	220, 456
CviAII	CATG	4 cut(s)	125, 211, 380, 464
CviJI	RGCY	1 cut(s)	197
CviKI_1	RGCY	1 cut(s)	197
CviQI	GTAC	2 cut(s)	220, 456
DdeI	CTNAG	2 cut(s)	8, 178
DpnI	GATC	1 cut(s)	129
DpnII	GATC	1 cut(s)	127
Eco31I	GGTCTC	1 cut(s)	413
Eco47I	GGWCC	1 cut(s)	239
Eco57I	CTGAAG	1 cut(s)	297
EcoO109I	RGGNCCY	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	331
FaeI	CATG	4 cut(s)	128, 214, 383, 467
FaiI	YATR	8 cut(s)	16, 38, 126, 207, 212, 339, 381, 465
FaqI	GGGAC	2 cut(s)	89, 252
FatI	CATG	4 cut(s)	124, 210, 379, 463
FspBI	CTAG	2 cut(s)	113, 243
Hin1II	CATG	4 cut(s)	128, 214, 383, 467
HincII	GTYRAC	1 cut(s)	411
HindII	GTYRAC	1 cut(s)	411
HinfI	GANTC	3 cut(s)	72, 174, 301
HphI	GGTGA	3 cut(s)	113, 313, 339
Hpy166II	GTNNAC	3 cut(s)	220, 343, 411
Hpy188I	TCNGA	4 cut(s)	68, 181, 233, 451
Hpy8I	GTNNAC	3 cut(s)	220, 343, 411
HpyAV	CCTTC	3 cut(s)	176, 238, 328
HpyCH4III	ACNGT	4 cut(s)	46, 251, 367, 415
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	4 cut(s)	100, 154, 307, 360
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpyF3I	CTNAG	2 cut(s)	8, 178
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	4 cut(s)	128, 214, 383, 467
Kzo9I	GATC	1 cut(s)	127
LpnPI	CCDG	6 cut(s)	36, 124, 180, 318, 345, 445
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	2 cut(s)	113, 243
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	1 cut(s)	129
MboI	GATC	1 cut(s)	127
MboII	GAAGA	2 cut(s)	81, 158
MluCI	AATT	2 cut(s)	95, 426
MlyI	GAGTC	1 cut(s)	66
MnlI	CCTC	2 cut(s)	30, 141
MslI	CAYNNNNRTG	1 cut(s)	215
MspR9I	CCNGG	1 cut(s)	333
MvaI	CCWGG	1 cut(s)	333
MwoI	GCNNNNNNNGC	1 cut(s)	287
NdeII	GATC	1 cut(s)	127
NlaIII	CATG	4 cut(s)	128, 214, 383, 467
NlaIV	GGNNCC	1 cut(s)	240
PfeI	GAWTC	2 cut(s)	174, 301
PflMI	CCANNNNNTGG	1 cut(s)	211
PleI	GAGTC	1 cut(s)	66
PpsI	GAGTC	1 cut(s)	66
PpuMI	RGGWCCY	1 cut(s)	239
Psp5II	RGGWCCY	1 cut(s)	239
Psp6I	CCWGG	1 cut(s)	331
PspGI	CCWGG	1 cut(s)	331
PspN4I	GGNNCC	1 cut(s)	240
PspPI	GGNCC	1 cut(s)	239
PspPPI	RGGWCCY	1 cut(s)	239
RsaI	GTAC	2 cut(s)	221, 457
RsaNI	GTAC	2 cut(s)	220, 456
RseI	CAYNNNNRTG	1 cut(s)	215
Sau3AI	GATC	1 cut(s)	127
Sau96I	GGNCC	1 cut(s)	239
SchI	GAGTC	1 cut(s)	66
ScrFI	CCNGG	1 cut(s)	333
SetI	ASST	8 cut(s)	14, 105, 114, 187, 199, 244, 352, 359
SfaNI	GCATC	1 cut(s)	163
SinI	GGWCC	1 cut(s)	239
SmiMI	CAYNNNNRTG	1 cut(s)	215
Sse9I	AATT	2 cut(s)	95, 426
SsiI	CCGC	1 cut(s)	374
SspMI	CTAG	2 cut(s)	113, 243
StyD4I	CCNGG	1 cut(s)	331
TaaI	ACNGT	4 cut(s)	46, 251, 367, 415
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	1 cut(s)	296
TasI	AATT	2 cut(s)	95, 426
TatI	WGTACW	2 cut(s)	219, 455
TfiI	GAWTC	2 cut(s)	174, 301
TscAI	CASTG	1 cut(s)	280
TspDTI	ATGAA	1 cut(s)	433
TspRI	CASTG	1 cut(s)	280
Van91I	CCANNNNNTGG	1 cut(s)	211
VpaK11BI	GGWCC	1 cut(s)	239
XspI	CTAG	2 cut(s)	113, 243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.