Rorug04G0301800

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
47723920 .. 47724700
781 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0301800.1

Sequence Viewer

Length: 387 bp
ATGGTAGCGGTCTCTCTCTTTTCCTCTGCGACTAGTCTTCCCACCCTTTGGAGCTCGCTGTCACTGCCATTGCCTCGAACCGAAGAAGCTCTCGGTACCCTACCCGGTAGAACTGGTTTTCTGAATAAGTGTTCAGTTTCAACAAGTTTTTCTGTACAAGCTTCCTTGCCGGAGAATAGCGATAGATTTAAAGTGGAATACACTCCATGGATGATTGTTGGATTGGGTAACCCTGGAAATAAGTACCATGGAACTAGGCACAATGTTGGTTTTGAAATGATAGATAGTATTTCCAAAATGCAGGGCATTGTGATGAATACAATTCAGTCAAAGGCACTGGTTGGAATAGTACAGGTTCCATTGGAGAGGTACCAATTTTGGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

128

Amino Acids

14.17

Weight (kDa)

8.89

Isoelectric Point (pI)

29.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pept_tRNA_hydro PF01195 71 - 117 4.2e-13 Peptidyl-tRNA hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000078)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g15240 FvH4_3g15270 FvH4_3g15280 FvH4_3g32750 FvH4_3g32760 FvH4_3g32760 FvH4_3g32880 FvH4_4g08190 FvH4_4g29160 FvH4_4g29370 FvH4_4g29400 FvH4_4g29420 FvH4_4g29420 FvH4_4g29420 FvH4_4g29430 FvH4_4g29440 FvH4_4g29450 FvH4_4g29450 FvH4_4g29450 FvH4_4g29460 FvH4_4g29461 FvH4_4g29462 FvH4_4g29463 FvH4_4g29480 FvH4_4g29481 FvH4_4g29482 FvH4_4g29483 FvH4_4g29484 FvH4_6g26720 FvH4_6g26720
malus_domestica MD00G1065200.v1.1 MD06G1145800.v1.1 MD06G1146000.v1.1 MD06G1146700.v1.1 MD13G1031000.v1.1 MD13G1033900.v1.1 MD13G1057000.v1.1 MD13G1057100.v1.1 MD13G1057200.v1.1 MD13G1057400.v1.1 MD13G1057800.v1.1 MD13G1058000.v1.1 MD13G1058100.v1.1 MD13G1058200.v1.1 MD13G1058300.v1.1 MD13G1058500.v1.1 MD13G1058600.v1.1 MD13G1058700.v1.1 MD16G1035700.v1.1 MD16G1056400.v1.1 MD16G1056600.v1.1 MD16G1056700.v1.1 MD16G1056900.v1.1 MD16G1058100.v1.1
prunus_persica Prupe.1G291100_v2.0.a1 Prupe.1G291200_v2.0.a1 Prupe.1G291500_v2.0.a1 Prupe.1G291600_v2.0.a1 Prupe.1G291700_v2.0.a1 Prupe.1G291800_v2.0.a1 Prupe.1G291900_v2.0.a1 Prupe.1G292000_v2.0.a1 Prupe.1G292100_v2.0.a1 Prupe.1G292400_v2.0.a1 Prupe.1G292500_v2.0.a1 Prupe.1G292600_v2.0.a1 Prupe.1G292700_v2.0.a1 Prupe.1G292800_v2.0.a1 Prupe.1G296000_v2.0.a1 Prupe.1G296100_v2.0.a1 Prupe.1G296300_v2.0.a1 Prupe.1G296600_v2.0.a1 Prupe.1G296900_v2.0.a1 Prupe.1G534600_v2.0.a1 Prupe.5G046700_v2.0.a1 Prupe.8G021800_v2.0.a1 Prupe.8G026400_v2.0.a1
pyrus_communis pycom06g13510 pycom06g13530 pycom06g13540 pycom06g13570 pycom06g13590 pycom06g13620 pycom13g02710 pycom13g02930 pycom13g05100 pycom13g05110 pycom13g05140 pycom13g05160 pycom13g05170 pycom13g05190 pycom13g05200 pycom13g05210 pycom13g05220 pycom16g03060 pycom16g04940 pycom16g04960 pycom16g04990 pycom16g05000 pycom16g05080
rosa_chinensis RchiOBHm_Chr1g0337981 RchiOBHm_Chr1g0337991 RchiOBHm_Chr1g0339431 RchiOBHm_Chr4g0402401 RchiOBHm_Chr4g0420571 RchiOBHm_Chr4g0420601 RchiOBHm_Chr4g0420611 RchiOBHm_Chr4g0420621 RchiOBHm_Chr4g0420631 RchiOBHm_Chr4g0437211 RchiOBHm_Chr4g0437221 RchiOBHm_Chr4g0437251 RchiOBHm_Chr4g0437431 RchiOBHm_Chr4g0437441 RchiOBHm_Chr4g0437491 RchiOBHm_Chr4g0437501 RchiOBHm_Chr4g0437511 RchiOBHm_Chr4g0437521 RchiOBHm_Chr4g0437531 RchiOBHm_Chr4g0437541 RchiOBHm_Chr4g0437551 RchiOBHm_Chr4g0437591 RchiOBHm_Chr4g0437631 RchiOBHm_Chr4g0437641 RchiOBHm_Chr4g0437671 RchiOBHm_Chr4g0437681 RchiOBHm_Chr4g0437711 RchiOBHm_Chr4g0437731 RchiOBHm_Chr4g0437741 RchiOBHm_Chr4g0437751 RchiOBHm_Chr5g0025681 RchiOBHm_Chr5g0025711 RchiOBHm_Chr5g0025731 RchiOBHm_Chr5g0059841 RchiOBHm_Chr6g0272651
rosa_laevigata RLG00000006420 RLG00000006421 RLG00000006423 RLG00000006426 RLG00000006427 RLG00000006428 RLG00000006429 RLG00000006431 RLG00000006433 RLG00000006434 RLG00000006435 RLG00000006436 RLG00000006437 RLG00000006455 RLG00000007746 RLG00000007747 RLG00000007748 RLG00000007749 RLG00000007750 RLG00000009091 RLG00000009092 RLG00000009095 RLG00000009096 RLG00000017856 RLG00000028094 RLG00000029230 RLG00000029231 RLG00000030008 RLG00000032859 RLG00000032860 RLG00000032861 RLG00000032865 RLG00000032868 RLG00000035332
rosa_multiflora Rmu_co7986016.1_g000001 Rmu_co8226539.1_g000001 Rmu_co8349613.1_g000001 Rmu_sc0000272.1_g000014 Rmu_sc0000591.1_g000003 Rmu_sc0000613.1_g000013 Rmu_sc0001629.1_g000022 Rmu_sc0001629.1_g000025 Rmu_sc0002131.1_g000027 Rmu_sc0002137.1_g000006 Rmu_sc0002137.1_g000014 Rmu_sc0002137.1_g000019 Rmu_sc0002472.1_g000002 Rmu_sc0002472.1_g000012 Rmu_sc0002472.1_g000018 Rmu_sc0002472.1_g000034 Rmu_sc0002472.1_g000040 Rmu_sc0002472.1_g000051 Rmu_sc0002638.1_g000005 Rmu_sc0002638.1_g000010 Rmu_sc0002638.1_g000025 Rmu_sc0002638.1_g000030 Rmu_sc0002638.1_g000037 Rmu_sc0002638.1_g000042 Rmu_sc0004339.1_g000019 Rmu_sc0005580.1_g000013 Rmu_sc0006617.1_g000002 Rmu_sc0006986.1_g000003 Rmu_sc0006986.1_g000017 Rmu_sc0008352.1_g000001 Rmu_sc0008352.1_g000002 Rmu_sc0009431.1_g000011 Rmu_sc0011080.1_g000003 Rmu_sc0011080.1_g000006 Rmu_sc0016549.1_g000001 Rmu_sc0016549.1_g000002 Rmu_sc0017154.1_g000001 Rmu_sc0017155.1_g000001 Rmu_sc0028438.1_g000001 Rmu_sc0041413.1_g000001 Rmu_ssc0000330.1_g000022
rosa_roxburghii Rroxscaffold_1G00020750 Rroxscaffold_1G00053460 Rroxscaffold_1G00054250 Rroxscaffold_1G00054260 Rroxscaffold_1G00054270 Rroxscaffold_1G00054290 Rroxscaffold_2G00120210 Rroxscaffold_4G00313460 Rroxscaffold_4G00313470 Rroxscaffold_4G00330630 Rroxscaffold_5G00347070 Rroxscaffold_5G00347110 Rroxscaffold_5G00378670 Rroxscaffold_5G00378690 Rroxscaffold_5G00378720 Rroxscaffold_5G00378730 Rroxscaffold_5G00378740 Rroxscaffold_5G00378760 Rroxscaffold_5G00378780 Rroxscaffold_5G00378790 Rroxscaffold_5G00378800 Rroxscaffold_5G00378810 Rroxscaffold_5G00378820 Rroxscaffold_5G00378840 Rroxscaffold_5G00378860 Rroxscaffold_5G00378870 Rroxscaffold_7G00196060
rosa_rugosa Rorug01G0142200.1 Rorug01G0332800 Rorug02G0012200 Rorug02G0248300 Rorug03G0219000 Rorug03G0219100 Rorug03G0219200 Rorug04G0035100 Rorug04G0301500 Rorug04G0301500 Rorug04G0301700 Rorug04G0301800 Rorug04G0301800 Rorug04G0301900 Rorug04G0302000 Rorug04G0302500 Rorug04G0302600 Rorug04G0302700 Rorug04G0302800 Rorug04G0302900 Rorug04G0303000 Rorug04G0303000 Rorug04G0303100 Rorug04G0303200 Rorug04G0303300 Rorug04G0303400 Rorug04G0303500 Rorug04G0303500 Rorug05G0087800 Rorug05G0088200 Rorug05G0326300 Rorug06G0173000
rosa_samantha Rh2AG222400 Rh4DG224800 Rh4DG359900 Rh4DG360000 Rh4DG360100 Rh4DG360200 Rh4DG360300 Rh4DG360500 Rh4DG360700 Rh4DG360800 Rh4DG360900 Rh4DG361000 Rh5DG177900 Rh5DG178200 Rh5DG178400 Rh6CG187800
rosa_wichuraiana Rw1G013580 Rw4G009020 Rw4G019580 Rw4G030990 Rw4G031000 Rw4G031220 Rw4G031230 Rw4G031240 Rw4G031250 Rw4G031260 Rw4G031270 Rw4G031280 Rw4G031290 Rw4G031310 Rw4G031320 Rw4G031330 Rw4G031340 Rw4G031360 Rw4G031370 Rw5G016310 Rw5G016320 Rw5G016330 Rw5G036760 Rw6G016090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 95, 369
AccB1I GGYRCC 2 cut(s) 95, 369
AccB7I CCANNNNNTGG 1 cut(s) 48
AciI CCGC 1 cut(s) 8
AfaI GTAC 5 cut(s) 97, 156, 245, 351, 371
AfiI CCNNNNNNNGG 1 cut(s) 48
AgsI TTSAA 2 cut(s) 141, 275
AhlI ACTAGT 1 cut(s) 32
AjnI CCWGG 1 cut(s) 232
AluBI AGCT 3 cut(s) 54, 89, 161
AluI AGCT 3 cut(s) 54, 89, 161
Alw21I GWGCWC 1 cut(s) 56
Alw26I GTCTC 1 cut(s) 16
Asp718I GGTACC 2 cut(s) 95, 369
AsuC2I CCSGG 1 cut(s) 105
BanI GGYRCC 2 cut(s) 95, 369
BanII GRGCYC 1 cut(s) 56
BbsI GAAGAC 1 cut(s) 29
Bbv12I GWGCWC 1 cut(s) 56
BciT130I CCWGG 1 cut(s) 234
BcnI CCSGG 1 cut(s) 105
BcoDI GTCTC 1 cut(s) 16
BcuI ACTAGT 1 cut(s) 32
BfaI CTAG 2 cut(s) 33, 255
Bme1390I CCNGG 2 cut(s) 105, 234
BmiI GGNNCC 3 cut(s) 97, 357, 371
BmrFI CCNGG 2 cut(s) 105, 234
BpiI GAAGAC 1 cut(s) 29
BpuMI CCSGG 1 cut(s) 105
BsaI GGTCTC 1 cut(s) 16
BsaJI CCNNGG 3 cut(s) 206, 232, 247
Bsc4I CCNNNNNNNGG 1 cut(s) 48
Bse1I ACTGG 2 cut(s) 118, 342
Bse3DI GCAATG 1 cut(s) 68
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 3 cut(s) 206, 232, 247
BseGI GGATG 1 cut(s) 216
BseLI CCNNNNNNNGG 1 cut(s) 48
BseMI GCAATG 1 cut(s) 68
BseNI ACTGG 2 cut(s) 118, 342
BshNI GGYRCC 2 cut(s) 95, 369
BsiHKAI GWGCWC 1 cut(s) 56
BsiSI CCGG 2 cut(s) 105, 170
BslI CCNNNNNNNGG 1 cut(s) 48
BsmAI GTCTC 1 cut(s) 16
Bso31I GGTCTC 1 cut(s) 16
Bsp1286I GDGCHC 1 cut(s) 56
Bsp1407I TGTACA 1 cut(s) 154
Bsp19I CCATGG 2 cut(s) 206, 247
BspACI CCGC 1 cut(s) 8
BspLI GGNNCC 3 cut(s) 97, 357, 371
BspT107I GGYRCC 2 cut(s) 95, 369
BspTNI GGTCTC 1 cut(s) 16
BsrDI GCAATG 1 cut(s) 68
BsrGI TGTACA 1 cut(s) 154
BsrI ACTGG 2 cut(s) 118, 342
BssECI CCNNGG 3 cut(s) 206, 232, 247
BssT1I CCWWGG 2 cut(s) 206, 247
Bst2UI CCWGG 1 cut(s) 234
BstAUI TGTACA 1 cut(s) 154
BstC8I GCNNGC 1 cut(s) 56
BstDSI CCRYGG 2 cut(s) 206, 247
BstEII GGTNACC 1 cut(s) 227
BstF5I GGATG 1 cut(s) 216
BstMAI GTCTC 1 cut(s) 16
BstMWI GCNNNNNNNGC 1 cut(s) 64
BstNI CCWGG 1 cut(s) 234
BstPI GGTNACC 1 cut(s) 227
BstSCI CCNGG 2 cut(s) 103, 232
BstV2I GAAGAC 1 cut(s) 29
BtgI CCRYGG 2 cut(s) 206, 247
BtsCI GGATG 1 cut(s) 216
BtsI GCAGTG 1 cut(s) 62
BtsIMutI CAGTG 2 cut(s) 62, 335
Cac8I GCNNGC 1 cut(s) 56
Csp6I GTAC 5 cut(s) 96, 155, 244, 350, 370
CspCI CAANNNNNGTGG 1 cut(s) 362
CviAII CATG 2 cut(s) 207, 248
CviJI RGCY 3 cut(s) 54, 89, 161
CviKI_1 RGCY 3 cut(s) 54, 89, 161
CviQI GTAC 5 cut(s) 96, 155, 244, 350, 370
DraI TTTAAA 1 cut(s) 190
Ecl136II GAGCTC 1 cut(s) 54
Eco130I CCWWGG 2 cut(s) 206, 247
Eco24I GRGCYC 1 cut(s) 56
Eco31I GGTCTC 1 cut(s) 16
Eco53kI GAGCTC 1 cut(s) 54
Eco91I GGTNACC 1 cut(s) 227
EcoICRI GAGCTC 1 cut(s) 54
EcoO65I GGTNACC 1 cut(s) 227
EcoRII CCWGG 1 cut(s) 232
EcoT14I CCWWGG 2 cut(s) 206, 247
EcoT38I GRGCYC 1 cut(s) 56
ErhI CCWWGG 2 cut(s) 206, 247
FaeI CATG 2 cut(s) 210, 251
FaiI YATR 2 cut(s) 208, 249
FatI CATG 2 cut(s) 206, 247
FokI GGATG 1 cut(s) 223
FriOI GRGCYC 1 cut(s) 56
FspBI CTAG 2 cut(s) 33, 255
HapII CCGG 2 cut(s) 105, 170
Hin1II CATG 2 cut(s) 210, 251
HindIII AAGCTT 1 cut(s) 159
HpaII CCGG 2 cut(s) 105, 170
Hpy188I TCNGA 1 cut(s) 123
HpyCH4V TGCA 1 cut(s) 301
HpyF10VI GCNNNNNNNGC 1 cut(s) 64
Hsp92II CATG 2 cut(s) 210, 251
KpnI GGTACC 2 cut(s) 99, 373
LmnI GCTCC 1 cut(s) 51
LpnPI CCDG 8 cut(s) 99, 118, 183, 219, 246, 287, 323, 338
MaeI CTAG 2 cut(s) 33, 255
MaeIII GTNAC 2 cut(s) 60, 227
MboII GAAGA 2 cut(s) 29, 95
MhlI GDGCHC 1 cut(s) 56
MluCI AATT 2 cut(s) 321, 374
MmeI TCCRAC 2 cut(s) 199, 322
MnlI CCTC 3 cut(s) 34, 84, 360
MseI TTAA 1 cut(s) 189
MslI CAYNNNNRTG 1 cut(s) 311
MspI CCGG 2 cut(s) 105, 170
MspR9I CCNGG 2 cut(s) 105, 234
MvaI CCWGG 1 cut(s) 234
MwoI GCNNNNNNNGC 1 cut(s) 64
NciI CCSGG 1 cut(s) 105
NcoI CCATGG 2 cut(s) 206, 247
NlaIII CATG 2 cut(s) 210, 251
NlaIV GGNNCC 3 cut(s) 97, 357, 371
NmuCI GTSAC 1 cut(s) 60
PflMI CCANNNNNTGG 1 cut(s) 48
Psp124BI GAGCTC 1 cut(s) 56
Psp6I CCWGG 1 cut(s) 232
PspEI GGTNACC 1 cut(s) 227
PspGI CCWGG 1 cut(s) 232
PspN4I GGNNCC 3 cut(s) 97, 357, 371
RsaI GTAC 5 cut(s) 97, 156, 245, 351, 371
RsaNI GTAC 5 cut(s) 96, 155, 244, 350, 370
RseI CAYNNNNRTG 1 cut(s) 311
SacI GAGCTC 1 cut(s) 56
SaqAI TTAA 1 cut(s) 189
ScrFI CCNGG 2 cut(s) 105, 234
SduI GDGCHC 1 cut(s) 56
SetI ASST 5 cut(s) 56, 91, 163, 357, 371
SmiMI CAYNNNNRTG 1 cut(s) 311
SpeI ACTAGT 1 cut(s) 32
Sse9I AATT 2 cut(s) 321, 374
SsiI CCGC 1 cut(s) 8
SspMI CTAG 2 cut(s) 33, 255
SstI GAGCTC 1 cut(s) 56
StyD4I CCNGG 2 cut(s) 103, 232
StyI CCWWGG 2 cut(s) 206, 247
TaqI TCGA 1 cut(s) 76
TasI AATT 2 cut(s) 321, 374
TatI WGTACW 2 cut(s) 154, 349
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TscAI CASTG 2 cut(s) 69, 342
TseFI GTSAC 1 cut(s) 60
Tsp45I GTSAC 1 cut(s) 60
TspDTI ATGAA 1 cut(s) 329
TspRI CASTG 2 cut(s) 69, 342
Van91I CCANNNNNTGG 1 cut(s) 48
XspI CTAG 2 cut(s) 33, 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.