RLG00000029231

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
34929452 .. 34930332
881 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029231

Sequence Viewer

Length: 612 bp
ATGTTTGTGAAGAAGCTATTGGGAGATGGACCTGTTACAACTGAAGGTGAAATATGGGGAAGACTGCGAAAGCTGGCCAACTCGGCCTTCCATGGAAAGAGCTTAAAGGTAACTAGTGCTGCGTTGATGCTAGAGAGGTGGGAAAATCATGAAGAAGGGAAAGAGATTGAGATATTTGAAGAATTTAGGTTGTTGACATCTGAAGTGATTTCCAGAACAGCATTTGGCAGCAGCTACTCTGAAGGGAAGAGCATTTTTGACATGTTGATGAAGTTAGCCTTCTTAACATTCAAAAATGCTTTAAAAACTAGGTTTCCTATCATCAGCGATGATATTGAAGCAGAGAAGCTTGAGAAAGAAGCAGAGAAGCTTGAGAAAGGAGTACGCGACTCCATAACACAGATTGTCAATAAAAGAGAACAGAAGGCAATGACTATGAGTGAGGAAGGAAAAAGTTTTGGGAGTGATTTTCTTGGATTACTTATGAAATCTCATCATGATGCCGATGACAACCAGAGGATTACAGTGGATGATCTAGTTGATGAGTGCAAGACATTTTACTTTGCTGGACAAGAAACTGTTAGAATCAAATATGGACTTGTCACACATTAA

Protein Analysis

204

Amino Acids

23.14

Weight (kDa)

5.65

Isoelectric Point (pI)

33.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 7 - 194 8.3e-16 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000078)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g15240 FvH4_3g15270 FvH4_3g15280 FvH4_3g32750 FvH4_3g32760 FvH4_3g32760 FvH4_3g32880 FvH4_4g08190 FvH4_4g29160 FvH4_4g29370 FvH4_4g29400 FvH4_4g29420 FvH4_4g29420 FvH4_4g29420 FvH4_4g29430 FvH4_4g29440 FvH4_4g29450 FvH4_4g29450 FvH4_4g29450 FvH4_4g29460 FvH4_4g29461 FvH4_4g29462 FvH4_4g29463 FvH4_4g29480 FvH4_4g29481 FvH4_4g29482 FvH4_4g29483 FvH4_4g29484 FvH4_6g26720 FvH4_6g26720
malus_domestica MD00G1065200.v1.1 MD06G1145800.v1.1 MD06G1146000.v1.1 MD06G1146700.v1.1 MD13G1031000.v1.1 MD13G1033900.v1.1 MD13G1057000.v1.1 MD13G1057100.v1.1 MD13G1057200.v1.1 MD13G1057400.v1.1 MD13G1057800.v1.1 MD13G1058000.v1.1 MD13G1058100.v1.1 MD13G1058200.v1.1 MD13G1058300.v1.1 MD13G1058500.v1.1 MD13G1058600.v1.1 MD13G1058700.v1.1 MD16G1035700.v1.1 MD16G1056400.v1.1 MD16G1056600.v1.1 MD16G1056700.v1.1 MD16G1056900.v1.1 MD16G1058100.v1.1
prunus_persica Prupe.1G291100_v2.0.a1 Prupe.1G291200_v2.0.a1 Prupe.1G291500_v2.0.a1 Prupe.1G291600_v2.0.a1 Prupe.1G291700_v2.0.a1 Prupe.1G291800_v2.0.a1 Prupe.1G291900_v2.0.a1 Prupe.1G292000_v2.0.a1 Prupe.1G292100_v2.0.a1 Prupe.1G292400_v2.0.a1 Prupe.1G292500_v2.0.a1 Prupe.1G292600_v2.0.a1 Prupe.1G292700_v2.0.a1 Prupe.1G292800_v2.0.a1 Prupe.1G296000_v2.0.a1 Prupe.1G296100_v2.0.a1 Prupe.1G296300_v2.0.a1 Prupe.1G296600_v2.0.a1 Prupe.1G296900_v2.0.a1 Prupe.1G534600_v2.0.a1 Prupe.5G046700_v2.0.a1 Prupe.8G021800_v2.0.a1 Prupe.8G026400_v2.0.a1
pyrus_communis pycom06g13510 pycom06g13530 pycom06g13540 pycom06g13570 pycom06g13590 pycom06g13620 pycom13g02710 pycom13g02930 pycom13g05100 pycom13g05110 pycom13g05140 pycom13g05160 pycom13g05170 pycom13g05190 pycom13g05200 pycom13g05210 pycom13g05220 pycom16g03060 pycom16g04940 pycom16g04960 pycom16g04990 pycom16g05000 pycom16g05080
rosa_chinensis RchiOBHm_Chr1g0337981 RchiOBHm_Chr1g0337991 RchiOBHm_Chr1g0339431 RchiOBHm_Chr4g0402401 RchiOBHm_Chr4g0420571 RchiOBHm_Chr4g0420601 RchiOBHm_Chr4g0420611 RchiOBHm_Chr4g0420621 RchiOBHm_Chr4g0420631 RchiOBHm_Chr4g0437211 RchiOBHm_Chr4g0437221 RchiOBHm_Chr4g0437251 RchiOBHm_Chr4g0437431 RchiOBHm_Chr4g0437441 RchiOBHm_Chr4g0437491 RchiOBHm_Chr4g0437501 RchiOBHm_Chr4g0437511 RchiOBHm_Chr4g0437521 RchiOBHm_Chr4g0437531 RchiOBHm_Chr4g0437541 RchiOBHm_Chr4g0437551 RchiOBHm_Chr4g0437591 RchiOBHm_Chr4g0437631 RchiOBHm_Chr4g0437641 RchiOBHm_Chr4g0437671 RchiOBHm_Chr4g0437681 RchiOBHm_Chr4g0437711 RchiOBHm_Chr4g0437731 RchiOBHm_Chr4g0437741 RchiOBHm_Chr4g0437751 RchiOBHm_Chr5g0025681 RchiOBHm_Chr5g0025711 RchiOBHm_Chr5g0025731 RchiOBHm_Chr5g0059841 RchiOBHm_Chr6g0272651
rosa_laevigata RLG00000006420 RLG00000006421 RLG00000006423 RLG00000006426 RLG00000006427 RLG00000006428 RLG00000006429 RLG00000006431 RLG00000006433 RLG00000006434 RLG00000006435 RLG00000006436 RLG00000006437 RLG00000006455 RLG00000007746 RLG00000007747 RLG00000007748 RLG00000007749 RLG00000007750 RLG00000009091 RLG00000009092 RLG00000009095 RLG00000009096 RLG00000017856 RLG00000028094 RLG00000029230 RLG00000029231 RLG00000030008 RLG00000032859 RLG00000032860 RLG00000032861 RLG00000032865 RLG00000032868 RLG00000035332
rosa_multiflora Rmu_co7986016.1_g000001 Rmu_co8226539.1_g000001 Rmu_co8349613.1_g000001 Rmu_sc0000272.1_g000014 Rmu_sc0000591.1_g000003 Rmu_sc0000613.1_g000013 Rmu_sc0001629.1_g000022 Rmu_sc0001629.1_g000025 Rmu_sc0002131.1_g000027 Rmu_sc0002137.1_g000006 Rmu_sc0002137.1_g000014 Rmu_sc0002137.1_g000019 Rmu_sc0002472.1_g000002 Rmu_sc0002472.1_g000012 Rmu_sc0002472.1_g000018 Rmu_sc0002472.1_g000034 Rmu_sc0002472.1_g000040 Rmu_sc0002472.1_g000051 Rmu_sc0002638.1_g000005 Rmu_sc0002638.1_g000010 Rmu_sc0002638.1_g000025 Rmu_sc0002638.1_g000030 Rmu_sc0002638.1_g000037 Rmu_sc0002638.1_g000042 Rmu_sc0004339.1_g000019 Rmu_sc0005580.1_g000013 Rmu_sc0006617.1_g000002 Rmu_sc0006986.1_g000003 Rmu_sc0006986.1_g000017 Rmu_sc0008352.1_g000001 Rmu_sc0008352.1_g000002 Rmu_sc0009431.1_g000011 Rmu_sc0011080.1_g000003 Rmu_sc0011080.1_g000006 Rmu_sc0016549.1_g000001 Rmu_sc0016549.1_g000002 Rmu_sc0017154.1_g000001 Rmu_sc0017155.1_g000001 Rmu_sc0028438.1_g000001 Rmu_sc0041413.1_g000001 Rmu_ssc0000330.1_g000022
rosa_roxburghii Rroxscaffold_1G00020750 Rroxscaffold_1G00053460 Rroxscaffold_1G00054250 Rroxscaffold_1G00054260 Rroxscaffold_1G00054270 Rroxscaffold_1G00054290 Rroxscaffold_2G00120210 Rroxscaffold_4G00313460 Rroxscaffold_4G00313470 Rroxscaffold_4G00330630 Rroxscaffold_5G00347070 Rroxscaffold_5G00347110 Rroxscaffold_5G00378670 Rroxscaffold_5G00378690 Rroxscaffold_5G00378720 Rroxscaffold_5G00378730 Rroxscaffold_5G00378740 Rroxscaffold_5G00378760 Rroxscaffold_5G00378780 Rroxscaffold_5G00378790 Rroxscaffold_5G00378800 Rroxscaffold_5G00378810 Rroxscaffold_5G00378820 Rroxscaffold_5G00378840 Rroxscaffold_5G00378860 Rroxscaffold_5G00378870 Rroxscaffold_7G00196060
rosa_rugosa Rorug01G0142200.1 Rorug01G0332800 Rorug02G0012200 Rorug02G0248300 Rorug03G0219000 Rorug03G0219100 Rorug03G0219200 Rorug04G0035100 Rorug04G0301500 Rorug04G0301500 Rorug04G0301700 Rorug04G0301800 Rorug04G0301800 Rorug04G0301900 Rorug04G0302000 Rorug04G0302500 Rorug04G0302600 Rorug04G0302700 Rorug04G0302800 Rorug04G0302900 Rorug04G0303000 Rorug04G0303000 Rorug04G0303100 Rorug04G0303200 Rorug04G0303300 Rorug04G0303400 Rorug04G0303500 Rorug04G0303500 Rorug05G0087800 Rorug05G0088200 Rorug05G0326300 Rorug06G0173000
rosa_samantha Rh2AG222400 Rh4DG224800 Rh4DG359900 Rh4DG360000 Rh4DG360100 Rh4DG360200 Rh4DG360300 Rh4DG360500 Rh4DG360700 Rh4DG360800 Rh4DG360900 Rh4DG361000 Rh5DG177900 Rh5DG178200 Rh5DG178400 Rh6CG187800
rosa_wichuraiana Rw1G013580 Rw4G009020 Rw4G019580 Rw4G030990 Rw4G031000 Rw4G031220 Rw4G031230 Rw4G031240 Rw4G031250 Rw4G031260 Rw4G031270 Rw4G031280 Rw4G031290 Rw4G031310 Rw4G031320 Rw4G031330 Rw4G031340 Rw4G031360 Rw4G031370 Rw5G016310 Rw5G016320 Rw5G016330 Rw5G036760 Rw6G016090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 387
AcoI YGGCCR 1 cut(s) 75
AcsI RAATTY 1 cut(s) 182
AcuI CTGAAG 3 cut(s) 63, 222, 261
AfaI GTAC 1 cut(s) 384
AflIII ACRYGT 1 cut(s) 261
AgsI TTSAA 3 cut(s) 179, 292, 338
AhlI ACTAGT 1 cut(s) 113
AjuI GAANNNNNNNTTGG 3 cut(s) 34, 71, 103
AluBI AGCT 6 cut(s) 16, 73, 102, 234, 349, 370
AluI AGCT 6 cut(s) 16, 73, 102, 234, 349, 370
AoxI GGCC 2 cut(s) 75, 84
ApeKI GCWGC 3 cut(s) 119, 228, 231
ApoI RAATTY 1 cut(s) 182
AspS9I GGNCC 1 cut(s) 29
AsuHPI GGTGA 1 cut(s) 59
AvaII GGWCC 1 cut(s) 29
BalI TGGCCA 1 cut(s) 77
BbsI GAAGAC 1 cut(s) 67
BbvI GCAGC 3 cut(s) 106, 240, 243
BccI CCATC 1 cut(s) 20
BcuI ACTAGT 1 cut(s) 113
BfaI CTAG 4 cut(s) 114, 131, 309, 536
BglI GCCNNNNNGGC 1 cut(s) 83
BisI GCNGC 3 cut(s) 120, 229, 232
BlsI GCNGC 3 cut(s) 121, 230, 233
Bme18I GGWCC 1 cut(s) 29
BmgT120I GGNCC 1 cut(s) 29
BmsI GCATC 2 cut(s) 117, 490
BpiI GAAGAC 1 cut(s) 67
BpuEI CTTGAG 2 cut(s) 371, 392
BsaJI CCNNGG 1 cut(s) 91
Bse3DI GCAATG 1 cut(s) 435
BseDI CCNNGG 1 cut(s) 91
BseGI GGATG 1 cut(s) 535
BseMI GCAATG 1 cut(s) 435
BseXI GCAGC 3 cut(s) 106, 240, 243
Bsh1236I CGCG 1 cut(s) 387
BshFI GGCC 2 cut(s) 77, 86
BsnI GGCC 2 cut(s) 77, 86
Bsp143I GATC 1 cut(s) 532
Bsp19I CCATGG 1 cut(s) 91
BspANI GGCC 2 cut(s) 77, 86
BspFNI CGCG 1 cut(s) 387
BspHI TCATGA 2 cut(s) 148, 496
BspQI GCTCTTC 1 cut(s) 242
BsrDI GCAATG 1 cut(s) 435
BssECI CCNNGG 1 cut(s) 91
BssMI GATC 1 cut(s) 532
BssT1I CCWWGG 1 cut(s) 91
Bst4CI ACNGT 2 cut(s) 526, 580
Bst6I CTCTTC 1 cut(s) 242
BstC8I GCNNGC 1 cut(s) 75
BstDSI CCRYGG 1 cut(s) 91
BstF5I GGATG 1 cut(s) 535
BstFNI CGCG 1 cut(s) 387
BstKTI GATC 1 cut(s) 535
BstMBI GATC 1 cut(s) 532
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstNSI RCATGY 1 cut(s) 265
BstUI CGCG 1 cut(s) 387
BstV1I GCAGC 3 cut(s) 106, 240, 243
BstV2I GAAGAC 1 cut(s) 67
BsuRI GGCC 2 cut(s) 77, 86
BtgI CCRYGG 1 cut(s) 91
BtgZI GCGATG 1 cut(s) 342
BtsCI GGATG 1 cut(s) 535
BtsIMutI CAGTG 1 cut(s) 531
Cac8I GCNNGC 1 cut(s) 75
CciI TCATGA 2 cut(s) 148, 496
Cfr13I GGNCC 1 cut(s) 29
Csp6I GTAC 1 cut(s) 383
CviAII CATG 4 cut(s) 92, 149, 262, 497
CviJI RGCY 9 cut(s) 16, 73, 77, 86, 102, 234, 278, 349, 370
CviKI_1 RGCY 9 cut(s) 16, 73, 77, 86, 102, 234, 278, 349, 370
CviQI GTAC 1 cut(s) 383
DpnI GATC 1 cut(s) 534
DpnII GATC 1 cut(s) 532
DraI TTTAAA 1 cut(s) 303
EaeI YGGCCR 1 cut(s) 75
Eam1104I CTCTTC 1 cut(s) 242
EarI CTCTTC 1 cut(s) 242
Eco130I CCWWGG 1 cut(s) 91
Eco47I GGWCC 1 cut(s) 29
Eco57I CTGAAG 3 cut(s) 63, 222, 261
EcoT14I CCWWGG 1 cut(s) 91
ErhI CCWWGG 1 cut(s) 91
FaeI CATG 4 cut(s) 95, 152, 265, 500
FaiI YATR 9 cut(s) 55, 93, 150, 263, 395, 437, 485, 498, 594
FalI AAGNNNNNCTT 2 cut(s) 263, 295
FatI CATG 4 cut(s) 91, 148, 261, 496
Fnu4HI GCNGC 3 cut(s) 120, 229, 232
FokI GGATG 1 cut(s) 542
Fsp4HI GCNGC 3 cut(s) 120, 229, 232
FspBI CTAG 4 cut(s) 114, 131, 309, 536
GluI GCNGC 3 cut(s) 120, 229, 232
HaeIII GGCC 2 cut(s) 77, 86
Hin1II CATG 4 cut(s) 95, 152, 265, 500
HincII GTYRAC 1 cut(s) 195
HindII GTYRAC 1 cut(s) 195
HindIII AAGCTT 2 cut(s) 347, 368
HinfI GANTC 2 cut(s) 389, 585
HphI GGTGA 1 cut(s) 59
Hpy166II GTNNAC 1 cut(s) 195
Hpy188I TCNGA 2 cut(s) 202, 241
Hpy188III TCNNGA 3 cut(s) 149, 213, 497
Hpy8I GTNNAC 1 cut(s) 195
HpyAV CCTTC 7 cut(s) 38, 97, 149, 236, 289, 418, 440
HpyCH4III ACNGT 2 cut(s) 526, 580
HpyCH4V TGCA 1 cut(s) 549
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
Hsp92II CATG 4 cut(s) 95, 152, 265, 500
Kzo9I GATC 1 cut(s) 532
LguI GCTCTTC 1 cut(s) 242
LpnPI CCDG 5 cut(s) 45, 59, 226, 527, 552
Lsp1109I GCAGC 3 cut(s) 106, 240, 243
LweI GCATC 2 cut(s) 117, 490
MaeI CTAG 4 cut(s) 114, 131, 309, 536
MaeIII GTNAC 3 cut(s) 34, 109, 601
MalI GATC 1 cut(s) 534
MboI GATC 1 cut(s) 532
MboII GAAGA 5 cut(s) 22, 72, 164, 191, 259
MlsI TGGCCA 1 cut(s) 77
MluCI AATT 1 cut(s) 182
MluNI TGGCCA 1 cut(s) 77
MlyI GAGTC 1 cut(s) 383
MnlI CCTC 3 cut(s) 129, 436, 510
Mox20I TGGCCA 1 cut(s) 77
MscI TGGCCA 1 cut(s) 77
MseI TTAA 4 cut(s) 104, 284, 302, 610
MslI CAYNNNNRTG 2 cut(s) 266, 498
Msp20I TGGCCA 1 cut(s) 77
MvnI CGCG 1 cut(s) 387
MwoI GCNNNNNNNGC 1 cut(s) 83
NcoI CCATGG 1 cut(s) 91
NdeII GATC 1 cut(s) 532
NlaIII CATG 4 cut(s) 95, 152, 265, 500
NmeAIII GCCGAG 1 cut(s) 62
NmuCI GTSAC 1 cut(s) 601
NspI RCATGY 1 cut(s) 265
PagI TCATGA 2 cut(s) 148, 496
PciI ACATGT 1 cut(s) 261
PciSI GCTCTTC 1 cut(s) 242
PfeI GAWTC 1 cut(s) 585
PkrI GCNGC 3 cut(s) 121, 230, 233
PleI GAGTC 1 cut(s) 383
PpsI GAGTC 1 cut(s) 383
PscI ACATGT 1 cut(s) 261
PspPI GGNCC 1 cut(s) 29
RsaI GTAC 1 cut(s) 384
RsaNI GTAC 1 cut(s) 383
RseI CAYNNNNRTG 2 cut(s) 266, 498
SapI GCTCTTC 1 cut(s) 242
SaqAI TTAA 4 cut(s) 104, 284, 302, 610
SatI GCNGC 3 cut(s) 120, 229, 232
Sau3AI GATC 1 cut(s) 532
Sau96I GGNCC 1 cut(s) 29
SchI GAGTC 1 cut(s) 383
SfaNI GCATC 2 cut(s) 117, 490
SfiI GGCCNNNNNGGCC 1 cut(s) 83
SinI GGWCC 1 cut(s) 29
SmiMI CAYNNNNRTG 2 cut(s) 266, 498
SmlI CTYRAG 2 cut(s) 350, 371
SmoI CTYRAG 2 cut(s) 350, 371
SpeI ACTAGT 1 cut(s) 113
Sse9I AATT 1 cut(s) 182
SspMI CTAG 4 cut(s) 114, 131, 309, 536
StyI CCWWGG 1 cut(s) 91
TaaI ACNGT 2 cut(s) 526, 580
TasI AATT 1 cut(s) 182
TfiI GAWTC 1 cut(s) 585
Tru1I TTAA 4 cut(s) 104, 284, 302, 610
Tru9I TTAA 4 cut(s) 104, 284, 302, 610
TscAI CASTG 1 cut(s) 531
TseFI GTSAC 1 cut(s) 601
TseI GCWGC 3 cut(s) 119, 228, 231
Tsp45I GTSAC 1 cut(s) 601
TspDTI ATGAA 3 cut(s) 165, 284, 500
TspRI CASTG 1 cut(s) 531
VpaK11BI GGWCC 1 cut(s) 29
XapI RAATTY 1 cut(s) 182
XceI RCATGY 1 cut(s) 265
XspI CTAG 4 cut(s) 114, 131, 309, 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.