Rh4DG360500

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Reverse (-)
58140400 .. 58152230
11831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG360500.1

Sequence Viewer

Length: 375 bp
ATGCAAAACGAAGCGATGAGCAGGCCAATGAAATTATCACACGATATCTCTTCTCATGTTCAACCCCATATTCATGCATGGTCCAAGAGTTATGGGAGGAATTTTCTTCAATGGTATGGTCCACAACCTGTTTTGGTTGTTACAGAACCTGAATTGTGCAAAGAGATCCTCCTTAACAAAGATGGAGTTTATCCAAAACCGAAAGCTTCTAAACTCGTGAAGAAACTAGTAGGAGATAGCATTTCGGTGACAGAAGGTGAAAAATGGGAAAAGCTGAGAAAGCTGTCTAACCATGCCTTCCGTGGAGAGAGAGTAAAATGGCATGGTCATTTGACTCAAATGGTGATTACAGAACCTAAGGGGTTGGAACTTTAG

Protein Analysis

124

Amino Acids

14.26

Weight (kDa)

9.52

Isoelectric Point (pI)

37.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 19 - 103 3.5e-09 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000078)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g15240 FvH4_3g15270 FvH4_3g15280 FvH4_3g32750 FvH4_3g32760 FvH4_3g32760 FvH4_3g32880 FvH4_4g08190 FvH4_4g29160 FvH4_4g29370 FvH4_4g29400 FvH4_4g29420 FvH4_4g29420 FvH4_4g29420 FvH4_4g29430 FvH4_4g29440 FvH4_4g29450 FvH4_4g29450 FvH4_4g29450 FvH4_4g29460 FvH4_4g29461 FvH4_4g29462 FvH4_4g29463 FvH4_4g29480 FvH4_4g29481 FvH4_4g29482 FvH4_4g29483 FvH4_4g29484 FvH4_6g26720 FvH4_6g26720
malus_domestica MD00G1065200.v1.1 MD06G1145800.v1.1 MD06G1146000.v1.1 MD06G1146700.v1.1 MD13G1031000.v1.1 MD13G1033900.v1.1 MD13G1057000.v1.1 MD13G1057100.v1.1 MD13G1057200.v1.1 MD13G1057400.v1.1 MD13G1057800.v1.1 MD13G1058000.v1.1 MD13G1058100.v1.1 MD13G1058200.v1.1 MD13G1058300.v1.1 MD13G1058500.v1.1 MD13G1058600.v1.1 MD13G1058700.v1.1 MD16G1035700.v1.1 MD16G1056400.v1.1 MD16G1056600.v1.1 MD16G1056700.v1.1 MD16G1056900.v1.1 MD16G1058100.v1.1
prunus_persica Prupe.1G291100_v2.0.a1 Prupe.1G291200_v2.0.a1 Prupe.1G291500_v2.0.a1 Prupe.1G291600_v2.0.a1 Prupe.1G291700_v2.0.a1 Prupe.1G291800_v2.0.a1 Prupe.1G291900_v2.0.a1 Prupe.1G292000_v2.0.a1 Prupe.1G292100_v2.0.a1 Prupe.1G292400_v2.0.a1 Prupe.1G292500_v2.0.a1 Prupe.1G292600_v2.0.a1 Prupe.1G292700_v2.0.a1 Prupe.1G292800_v2.0.a1 Prupe.1G296000_v2.0.a1 Prupe.1G296100_v2.0.a1 Prupe.1G296300_v2.0.a1 Prupe.1G296600_v2.0.a1 Prupe.1G296900_v2.0.a1 Prupe.1G534600_v2.0.a1 Prupe.5G046700_v2.0.a1 Prupe.8G021800_v2.0.a1 Prupe.8G026400_v2.0.a1
pyrus_communis pycom06g13510 pycom06g13530 pycom06g13540 pycom06g13570 pycom06g13590 pycom06g13620 pycom13g02710 pycom13g02930 pycom13g05100 pycom13g05110 pycom13g05140 pycom13g05160 pycom13g05170 pycom13g05190 pycom13g05200 pycom13g05210 pycom13g05220 pycom16g03060 pycom16g04940 pycom16g04960 pycom16g04990 pycom16g05000 pycom16g05080
rosa_chinensis RchiOBHm_Chr1g0337981 RchiOBHm_Chr1g0337991 RchiOBHm_Chr1g0339431 RchiOBHm_Chr4g0402401 RchiOBHm_Chr4g0420571 RchiOBHm_Chr4g0420601 RchiOBHm_Chr4g0420611 RchiOBHm_Chr4g0420621 RchiOBHm_Chr4g0420631 RchiOBHm_Chr4g0437211 RchiOBHm_Chr4g0437221 RchiOBHm_Chr4g0437251 RchiOBHm_Chr4g0437431 RchiOBHm_Chr4g0437441 RchiOBHm_Chr4g0437491 RchiOBHm_Chr4g0437501 RchiOBHm_Chr4g0437511 RchiOBHm_Chr4g0437521 RchiOBHm_Chr4g0437531 RchiOBHm_Chr4g0437541 RchiOBHm_Chr4g0437551 RchiOBHm_Chr4g0437591 RchiOBHm_Chr4g0437631 RchiOBHm_Chr4g0437641 RchiOBHm_Chr4g0437671 RchiOBHm_Chr4g0437681 RchiOBHm_Chr4g0437711 RchiOBHm_Chr4g0437731 RchiOBHm_Chr4g0437741 RchiOBHm_Chr4g0437751 RchiOBHm_Chr5g0025681 RchiOBHm_Chr5g0025711 RchiOBHm_Chr5g0025731 RchiOBHm_Chr5g0059841 RchiOBHm_Chr6g0272651
rosa_laevigata RLG00000006420 RLG00000006421 RLG00000006423 RLG00000006426 RLG00000006427 RLG00000006428 RLG00000006429 RLG00000006431 RLG00000006433 RLG00000006434 RLG00000006435 RLG00000006436 RLG00000006437 RLG00000006455 RLG00000007746 RLG00000007747 RLG00000007748 RLG00000007749 RLG00000007750 RLG00000009091 RLG00000009092 RLG00000009095 RLG00000009096 RLG00000017856 RLG00000028094 RLG00000029230 RLG00000029231 RLG00000030008 RLG00000032859 RLG00000032860 RLG00000032861 RLG00000032865 RLG00000032868 RLG00000035332
rosa_multiflora Rmu_co7986016.1_g000001 Rmu_co8226539.1_g000001 Rmu_co8349613.1_g000001 Rmu_sc0000272.1_g000014 Rmu_sc0000591.1_g000003 Rmu_sc0000613.1_g000013 Rmu_sc0001629.1_g000022 Rmu_sc0001629.1_g000025 Rmu_sc0002131.1_g000027 Rmu_sc0002137.1_g000006 Rmu_sc0002137.1_g000014 Rmu_sc0002137.1_g000019 Rmu_sc0002472.1_g000002 Rmu_sc0002472.1_g000012 Rmu_sc0002472.1_g000018 Rmu_sc0002472.1_g000034 Rmu_sc0002472.1_g000040 Rmu_sc0002472.1_g000051 Rmu_sc0002638.1_g000005 Rmu_sc0002638.1_g000010 Rmu_sc0002638.1_g000025 Rmu_sc0002638.1_g000030 Rmu_sc0002638.1_g000037 Rmu_sc0002638.1_g000042 Rmu_sc0004339.1_g000019 Rmu_sc0005580.1_g000013 Rmu_sc0006617.1_g000002 Rmu_sc0006986.1_g000003 Rmu_sc0006986.1_g000017 Rmu_sc0008352.1_g000001 Rmu_sc0008352.1_g000002 Rmu_sc0009431.1_g000011 Rmu_sc0011080.1_g000003 Rmu_sc0011080.1_g000006 Rmu_sc0016549.1_g000001 Rmu_sc0016549.1_g000002 Rmu_sc0017154.1_g000001 Rmu_sc0017155.1_g000001 Rmu_sc0028438.1_g000001 Rmu_sc0041413.1_g000001 Rmu_ssc0000330.1_g000022
rosa_roxburghii Rroxscaffold_1G00020750 Rroxscaffold_1G00053460 Rroxscaffold_1G00054250 Rroxscaffold_1G00054260 Rroxscaffold_1G00054270 Rroxscaffold_1G00054290 Rroxscaffold_2G00120210 Rroxscaffold_4G00313460 Rroxscaffold_4G00313470 Rroxscaffold_4G00330630 Rroxscaffold_5G00347070 Rroxscaffold_5G00347110 Rroxscaffold_5G00378670 Rroxscaffold_5G00378690 Rroxscaffold_5G00378720 Rroxscaffold_5G00378730 Rroxscaffold_5G00378740 Rroxscaffold_5G00378760 Rroxscaffold_5G00378780 Rroxscaffold_5G00378790 Rroxscaffold_5G00378800 Rroxscaffold_5G00378810 Rroxscaffold_5G00378820 Rroxscaffold_5G00378840 Rroxscaffold_5G00378860 Rroxscaffold_5G00378870 Rroxscaffold_7G00196060
rosa_rugosa Rorug01G0142200.1 Rorug01G0332800 Rorug02G0012200 Rorug02G0248300 Rorug03G0219000 Rorug03G0219100 Rorug03G0219200 Rorug04G0035100 Rorug04G0301500 Rorug04G0301500 Rorug04G0301700 Rorug04G0301800 Rorug04G0301800 Rorug04G0301900 Rorug04G0302000 Rorug04G0302500 Rorug04G0302600 Rorug04G0302700 Rorug04G0302800 Rorug04G0302900 Rorug04G0303000 Rorug04G0303000 Rorug04G0303100 Rorug04G0303200 Rorug04G0303300 Rorug04G0303400 Rorug04G0303500 Rorug04G0303500 Rorug05G0087800 Rorug05G0088200 Rorug05G0326300 Rorug06G0173000
rosa_samantha Rh2AG222400 Rh4DG224800 Rh4DG359900 Rh4DG360000 Rh4DG360100 Rh4DG360200 Rh4DG360300 Rh4DG360500 Rh4DG360700 Rh4DG360800 Rh4DG360900 Rh4DG361000 Rh5DG177900 Rh5DG178200 Rh5DG178400 Rh6CG187800
rosa_wichuraiana Rw1G013580 Rw4G009020 Rw4G019580 Rw4G030990 Rw4G031000 Rw4G031220 Rw4G031230 Rw4G031240 Rw4G031250 Rw4G031260 Rw4G031270 Rw4G031280 Rw4G031290 Rw4G031310 Rw4G031320 Rw4G031330 Rw4G031340 Rw4G031360 Rw4G031370 Rw5G016310 Rw5G016320 Rw5G016330 Rw5G036760 Rw6G016090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 160
AcsI RAATTY 1 cut(s) 100
AgsI TTSAA 2 cut(s) 62, 110
AhlI ACTAGT 1 cut(s) 226
AluBI AGCT 3 cut(s) 206, 274, 283
AluI AGCT 3 cut(s) 206, 274, 283
AlwI GGATC 1 cut(s) 160
AlwNI CAGNNNCTG 1 cut(s) 149
AoxI GGCC 1 cut(s) 23
ApoI RAATTY 1 cut(s) 100
AspS9I GGNCC 2 cut(s) 81, 119
AsuHPI GGTGA 3 cut(s) 259, 269, 355
AvaII GGWCC 2 cut(s) 81, 119
AxyI CCTNAGG 1 cut(s) 357
BauI CACGAG 1 cut(s) 215
BccI CCATC 1 cut(s) 176
BcuI ACTAGT 1 cut(s) 226
BfaI CTAG 1 cut(s) 227
Bme18I GGWCC 2 cut(s) 81, 119
BmgT120I GGNCC 2 cut(s) 81, 119
BsaJI CCNNGG 1 cut(s) 301
BsaXI ACNNNNNCTCC 2 cut(s) 297, 327
Bse21I CCTNAGG 1 cut(s) 357
BseDI CCNNGG 1 cut(s) 301
BseMII CTCAG 1 cut(s) 266
BshFI GGCC 1 cut(s) 25
BsnI GGCC 1 cut(s) 25
Bsp143I GATC 1 cut(s) 165
BspANI GGCC 1 cut(s) 25
BspCNI CTCAG 1 cut(s) 267
BspPI GGATC 1 cut(s) 160
BssECI CCNNGG 1 cut(s) 301
BssMI GATC 1 cut(s) 165
BssSI CACGAG 1 cut(s) 215
Bst2BI CACGAG 1 cut(s) 215
Bst6I CTCTTC 1 cut(s) 55
BstC8I GCNNGC 1 cut(s) 23
BstDEI CTNAG 2 cut(s) 275, 357
BstDSI CCRYGG 1 cut(s) 301
BstKTI GATC 1 cut(s) 168
BstMBI GATC 1 cut(s) 165
BstMWI GCNNNNNNNGC 1 cut(s) 280
BstX2I RGATCY 1 cut(s) 165
BstYI RGATCY 1 cut(s) 165
Bsu36I CCTNAGG 1 cut(s) 357
BsuRI GGCC 1 cut(s) 25
BtgI CCRYGG 1 cut(s) 301
BtgZI GCGATG 1 cut(s) 29
Cac8I GCNNGC 1 cut(s) 23
CaiI CAGNNNCTG 1 cut(s) 149
Cfr13I GGNCC 2 cut(s) 81, 119
CviAII CATG 5 cut(s) 56, 74, 78, 293, 323
CviJI RGCY 4 cut(s) 25, 206, 274, 283
CviKI_1 RGCY 4 cut(s) 25, 206, 274, 283
DdeI CTNAG 2 cut(s) 275, 357
DpnI GATC 1 cut(s) 167
DpnII GATC 1 cut(s) 165
Eam1104I CTCTTC 1 cut(s) 55
EarI CTCTTC 1 cut(s) 55
Eco32I GATATC 1 cut(s) 46
Eco47I GGWCC 2 cut(s) 81, 119
Eco81I CCTNAGG 1 cut(s) 357
EcoRV GATATC 1 cut(s) 46
EcoT22I ATGCAT 1 cut(s) 79
FaeI CATG 5 cut(s) 59, 77, 81, 296, 326
FaiI YATR 8 cut(s) 57, 69, 75, 79, 93, 117, 294, 324
FatI CATG 5 cut(s) 55, 73, 77, 292, 322
FspBI CTAG 1 cut(s) 227
HaeIII GGCC 1 cut(s) 25
Hin1II CATG 5 cut(s) 59, 77, 81, 296, 326
HindIII AAGCTT 1 cut(s) 204
HinfI GANTC 1 cut(s) 334
HphI GGTGA 3 cut(s) 259, 269, 355
Hpy166II GTNNAC 1 cut(s) 122
Hpy188III TCNNGA 1 cut(s) 217
Hpy8I GTNNAC 1 cut(s) 122
HpyAV CCTTC 2 cut(s) 248, 307
HpyCH4V TGCA 3 cut(s) 4, 77, 159
HpyF10VI GCNNNNNNNGC 1 cut(s) 280
HpyF3I CTNAG 2 cut(s) 275, 357
Hsp92II CATG 5 cut(s) 59, 77, 81, 296, 326
Kzo9I GATC 1 cut(s) 165
LpnPI CCDG 3 cut(s) 7, 141, 162
MaeI CTAG 1 cut(s) 227
MaeIII GTNAC 2 cut(s) 139, 247
MalI GATC 1 cut(s) 167
MboI GATC 1 cut(s) 165
MboII GAAGA 3 cut(s) 42, 98, 232
MflI RGATCY 1 cut(s) 165
MluCI AATT 3 cut(s) 32, 100, 152
MlyI GAGTC 1 cut(s) 328
MmeI TCCRAC 1 cut(s) 345
MnlI CCTC 2 cut(s) 90, 179
Mph1103I ATGCAT 1 cut(s) 79
MseI TTAA 1 cut(s) 174
MslI CAYNNNNRTG 2 cut(s) 72, 245
MwoI GCNNNNNNNGC 1 cut(s) 280
NdeII GATC 1 cut(s) 165
NlaIII CATG 5 cut(s) 59, 77, 81, 296, 326
NmuCI GTSAC 1 cut(s) 247
NsiI ATGCAT 1 cut(s) 79
PleI GAGTC 1 cut(s) 328
PpsI GAGTC 1 cut(s) 328
PspPI GGNCC 2 cut(s) 81, 119
PstNI CAGNNNCTG 1 cut(s) 149
PsuI RGATCY 1 cut(s) 165
RseI CAYNNNNRTG 2 cut(s) 72, 245
SaqAI TTAA 1 cut(s) 174
Sau3AI GATC 1 cut(s) 165
Sau96I GGNCC 2 cut(s) 81, 119
SchI GAGTC 1 cut(s) 328
SetI ASST 7 cut(s) 130, 151, 208, 259, 276, 285, 358
SinI GGWCC 2 cut(s) 81, 119
SmiMI CAYNNNNRTG 2 cut(s) 72, 245
SpeI ACTAGT 1 cut(s) 226
Sse9I AATT 3 cut(s) 32, 100, 152
SspMI CTAG 1 cut(s) 227
TasI AATT 3 cut(s) 32, 100, 152
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TseFI GTSAC 1 cut(s) 247
Tsp45I GTSAC 1 cut(s) 247
TspDTI ATGAA 2 cut(s) 44, 62
TspGWI ACGGA 1 cut(s) 290
VpaK11BI GGWCC 2 cut(s) 81, 119
XapI RAATTY 1 cut(s) 100
XcmI CCANNNNNNNNNTGG 1 cut(s) 299
XspI CTAG 1 cut(s) 227
Zsp2I ATGCAT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.