Rw4G031290

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
58177586 .. 58178457
872 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G031290.1

Sequence Viewer

Length: 747 bp
ATGGAGATTGTTAAGAAAAGAGAACAAAAGGCATTGAAAATAACTGGGGAAAAAGAAATCTTGGGGAGTGATTTTCTGGGATTGCTTTTAAAGGCTCATCATGGTGCCAATGACAAGCAGCGGATTTCGATGAACGAATTGGTTGAAGAGTGCAGGACGTTTTACTTTGCTGGACAAGAAACTACTAATACTTTGCTTGCATGGACTGTCGTTCTTCTAGGACAACATCCTTATTGGCAAGAGGAAGCCAGAAAGGAGGTGCTGCAACTATTTGGCAAACAAACTCCAAATCCTGATGGCATTTCCAAAATCAAAACAATGAGCATGATCATCAGTGAGACTCTAAGGTTATATCCTCCTGCTAATTTGCTTGTAAGGAGAGTTGCACGGGATGTTAGACTGGGAAAACTCCTAGTTCCTGCTGATGTTGAATTGCTTGTCCCAACCCTGGCATTTCACCATGATCCTCAATTATGGGGACAAGATGCGGCACTTTTCAAACCAGAGCGATTTTCTGAAGGGGTTGCTAAAGCTACTAATGATAACATGGCCGCATTCATGCCATTTGGATTGGGACCTAGAATGTGTGTAGGCTTCAACTTTGCCGCTATTGAAGCAAAGATTGCTCTGTCAATGATTCTACAACGCTACTCATTTACCCTTTCCCCTGCTTATGTACACTCGCCTTCTCAGTTTCTCACGATCCGCCCACAGCATGGAGCTCAAGTATTTCTACACTCACTTTGA

Protein Analysis

248

Amino Acids

27.93

Weight (kDa)

9.04

Isoelectric Point (pI)

39.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 20 - 224 6.5e-53 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000078)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g15240 FvH4_3g15270 FvH4_3g15280 FvH4_3g32750 FvH4_3g32760 FvH4_3g32760 FvH4_3g32880 FvH4_4g08190 FvH4_4g29160 FvH4_4g29370 FvH4_4g29400 FvH4_4g29420 FvH4_4g29420 FvH4_4g29420 FvH4_4g29430 FvH4_4g29440 FvH4_4g29450 FvH4_4g29450 FvH4_4g29450 FvH4_4g29460 FvH4_4g29461 FvH4_4g29462 FvH4_4g29463 FvH4_4g29480 FvH4_4g29481 FvH4_4g29482 FvH4_4g29483 FvH4_4g29484 FvH4_6g26720 FvH4_6g26720
malus_domestica MD00G1065200.v1.1 MD06G1145800.v1.1 MD06G1146000.v1.1 MD06G1146700.v1.1 MD13G1031000.v1.1 MD13G1033900.v1.1 MD13G1057000.v1.1 MD13G1057100.v1.1 MD13G1057200.v1.1 MD13G1057400.v1.1 MD13G1057800.v1.1 MD13G1058000.v1.1 MD13G1058100.v1.1 MD13G1058200.v1.1 MD13G1058300.v1.1 MD13G1058500.v1.1 MD13G1058600.v1.1 MD13G1058700.v1.1 MD16G1035700.v1.1 MD16G1056400.v1.1 MD16G1056600.v1.1 MD16G1056700.v1.1 MD16G1056900.v1.1 MD16G1058100.v1.1
prunus_persica Prupe.1G291100_v2.0.a1 Prupe.1G291200_v2.0.a1 Prupe.1G291500_v2.0.a1 Prupe.1G291600_v2.0.a1 Prupe.1G291700_v2.0.a1 Prupe.1G291800_v2.0.a1 Prupe.1G291900_v2.0.a1 Prupe.1G292000_v2.0.a1 Prupe.1G292100_v2.0.a1 Prupe.1G292400_v2.0.a1 Prupe.1G292500_v2.0.a1 Prupe.1G292600_v2.0.a1 Prupe.1G292700_v2.0.a1 Prupe.1G292800_v2.0.a1 Prupe.1G296000_v2.0.a1 Prupe.1G296100_v2.0.a1 Prupe.1G296300_v2.0.a1 Prupe.1G296600_v2.0.a1 Prupe.1G296900_v2.0.a1 Prupe.1G534600_v2.0.a1 Prupe.5G046700_v2.0.a1 Prupe.8G021800_v2.0.a1 Prupe.8G026400_v2.0.a1
pyrus_communis pycom06g13510 pycom06g13530 pycom06g13540 pycom06g13570 pycom06g13590 pycom06g13620 pycom13g02710 pycom13g02930 pycom13g05100 pycom13g05110 pycom13g05140 pycom13g05160 pycom13g05170 pycom13g05190 pycom13g05200 pycom13g05210 pycom13g05220 pycom16g03060 pycom16g04940 pycom16g04960 pycom16g04990 pycom16g05000 pycom16g05080
rosa_chinensis RchiOBHm_Chr1g0337981 RchiOBHm_Chr1g0337991 RchiOBHm_Chr1g0339431 RchiOBHm_Chr4g0402401 RchiOBHm_Chr4g0420571 RchiOBHm_Chr4g0420601 RchiOBHm_Chr4g0420611 RchiOBHm_Chr4g0420621 RchiOBHm_Chr4g0420631 RchiOBHm_Chr4g0437211 RchiOBHm_Chr4g0437221 RchiOBHm_Chr4g0437251 RchiOBHm_Chr4g0437431 RchiOBHm_Chr4g0437441 RchiOBHm_Chr4g0437491 RchiOBHm_Chr4g0437501 RchiOBHm_Chr4g0437511 RchiOBHm_Chr4g0437521 RchiOBHm_Chr4g0437531 RchiOBHm_Chr4g0437541 RchiOBHm_Chr4g0437551 RchiOBHm_Chr4g0437591 RchiOBHm_Chr4g0437631 RchiOBHm_Chr4g0437641 RchiOBHm_Chr4g0437671 RchiOBHm_Chr4g0437681 RchiOBHm_Chr4g0437711 RchiOBHm_Chr4g0437731 RchiOBHm_Chr4g0437741 RchiOBHm_Chr4g0437751 RchiOBHm_Chr5g0025681 RchiOBHm_Chr5g0025711 RchiOBHm_Chr5g0025731 RchiOBHm_Chr5g0059841 RchiOBHm_Chr6g0272651
rosa_laevigata RLG00000006420 RLG00000006421 RLG00000006423 RLG00000006426 RLG00000006427 RLG00000006428 RLG00000006429 RLG00000006431 RLG00000006433 RLG00000006434 RLG00000006435 RLG00000006436 RLG00000006437 RLG00000006455 RLG00000007746 RLG00000007747 RLG00000007748 RLG00000007749 RLG00000007750 RLG00000009091 RLG00000009092 RLG00000009095 RLG00000009096 RLG00000017856 RLG00000028094 RLG00000029230 RLG00000029231 RLG00000030008 RLG00000032859 RLG00000032860 RLG00000032861 RLG00000032865 RLG00000032868 RLG00000035332
rosa_multiflora Rmu_co7986016.1_g000001 Rmu_co8226539.1_g000001 Rmu_co8349613.1_g000001 Rmu_sc0000272.1_g000014 Rmu_sc0000591.1_g000003 Rmu_sc0000613.1_g000013 Rmu_sc0001629.1_g000022 Rmu_sc0001629.1_g000025 Rmu_sc0002131.1_g000027 Rmu_sc0002137.1_g000006 Rmu_sc0002137.1_g000014 Rmu_sc0002137.1_g000019 Rmu_sc0002472.1_g000002 Rmu_sc0002472.1_g000012 Rmu_sc0002472.1_g000018 Rmu_sc0002472.1_g000034 Rmu_sc0002472.1_g000040 Rmu_sc0002472.1_g000051 Rmu_sc0002638.1_g000005 Rmu_sc0002638.1_g000010 Rmu_sc0002638.1_g000025 Rmu_sc0002638.1_g000030 Rmu_sc0002638.1_g000037 Rmu_sc0002638.1_g000042 Rmu_sc0004339.1_g000019 Rmu_sc0005580.1_g000013 Rmu_sc0006617.1_g000002 Rmu_sc0006986.1_g000003 Rmu_sc0006986.1_g000017 Rmu_sc0008352.1_g000001 Rmu_sc0008352.1_g000002 Rmu_sc0009431.1_g000011 Rmu_sc0011080.1_g000003 Rmu_sc0011080.1_g000006 Rmu_sc0016549.1_g000001 Rmu_sc0016549.1_g000002 Rmu_sc0017154.1_g000001 Rmu_sc0017155.1_g000001 Rmu_sc0028438.1_g000001 Rmu_sc0041413.1_g000001 Rmu_ssc0000330.1_g000022
rosa_roxburghii Rroxscaffold_1G00020750 Rroxscaffold_1G00053460 Rroxscaffold_1G00054250 Rroxscaffold_1G00054260 Rroxscaffold_1G00054270 Rroxscaffold_1G00054290 Rroxscaffold_2G00120210 Rroxscaffold_4G00313460 Rroxscaffold_4G00313470 Rroxscaffold_4G00330630 Rroxscaffold_5G00347070 Rroxscaffold_5G00347110 Rroxscaffold_5G00378670 Rroxscaffold_5G00378690 Rroxscaffold_5G00378720 Rroxscaffold_5G00378730 Rroxscaffold_5G00378740 Rroxscaffold_5G00378760 Rroxscaffold_5G00378780 Rroxscaffold_5G00378790 Rroxscaffold_5G00378800 Rroxscaffold_5G00378810 Rroxscaffold_5G00378820 Rroxscaffold_5G00378840 Rroxscaffold_5G00378860 Rroxscaffold_5G00378870 Rroxscaffold_7G00196060
rosa_rugosa Rorug01G0142200.1 Rorug01G0332800 Rorug02G0012200 Rorug02G0248300 Rorug03G0219000 Rorug03G0219100 Rorug03G0219200 Rorug04G0035100 Rorug04G0301500 Rorug04G0301500 Rorug04G0301700 Rorug04G0301800 Rorug04G0301800 Rorug04G0301900 Rorug04G0302000 Rorug04G0302500 Rorug04G0302600 Rorug04G0302700 Rorug04G0302800 Rorug04G0302900 Rorug04G0303000 Rorug04G0303000 Rorug04G0303100 Rorug04G0303200 Rorug04G0303300 Rorug04G0303400 Rorug04G0303500 Rorug04G0303500 Rorug05G0087800 Rorug05G0088200 Rorug05G0326300 Rorug06G0173000
rosa_samantha Rh2AG222400 Rh4DG224800 Rh4DG359900 Rh4DG360000 Rh4DG360100 Rh4DG360200 Rh4DG360300 Rh4DG360500 Rh4DG360700 Rh4DG360800 Rh4DG360900 Rh4DG361000 Rh5DG177900 Rh5DG178200 Rh5DG178400 Rh6CG187800
rosa_wichuraiana Rw1G013580 Rw4G009020 Rw4G019580 Rw4G030990 Rw4G031000 Rw4G031220 Rw4G031230 Rw4G031240 Rw4G031250 Rw4G031260 Rw4G031270 Rw4G031280 Rw4G031290 Rw4G031310 Rw4G031320 Rw4G031330 Rw4G031340 Rw4G031360 Rw4G031370 Rw5G016310 Rw5G016320 Rw5G016330 Rw5G036760 Rw6G016090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 104
AccB7I CCANNNNNTGG 1 cut(s) 716
AciI CCGC 5 cut(s) 121, 488, 552, 606, 706
AclWI GGATC 2 cut(s) 458, 697
AcoI YGGCCR 1 cut(s) 549
AcuI CTGAAG 1 cut(s) 537
AfaI GTAC 1 cut(s) 678
AfiI CCNNNNNNNGG 2 cut(s) 448, 716
AgsI TTSAA 6 cut(s) 37, 146, 431, 499, 598, 614
AjnI CCWGG 1 cut(s) 447
AluBI AGCT 2 cut(s) 533, 722
AluI AGCT 2 cut(s) 533, 722
Alw21I GWGCWC 1 cut(s) 724
Alw26I GTCTC 1 cut(s) 332
AlwI GGATC 2 cut(s) 458, 697
AoxI GGCC 1 cut(s) 549
ApeKI GCWGC 2 cut(s) 118, 262
AspS9I GGNCC 1 cut(s) 575
AsuHPI GGTGA 1 cut(s) 449
AvaII GGWCC 1 cut(s) 575
BanI GGYRCC 1 cut(s) 104
BanII GRGCYC 1 cut(s) 724
Bbv12I GWGCWC 1 cut(s) 724
BbvI GCAGC 2 cut(s) 130, 249
BccI CCATC 1 cut(s) 290
BciT130I CCWGG 1 cut(s) 449
BclI TGATCA 1 cut(s) 327
BcoDI GTCTC 1 cut(s) 332
BfaI CTAG 3 cut(s) 218, 413, 579
BisI GCNGC 5 cut(s) 119, 263, 489, 552, 606
BlsI GCNGC 5 cut(s) 120, 264, 490, 553, 607
Bme1390I CCNGG 1 cut(s) 449
Bme18I GGWCC 1 cut(s) 575
BmgT120I GGNCC 1 cut(s) 575
BmiI GGNNCC 2 cut(s) 106, 576
BmrFI CCNGG 1 cut(s) 449
BmrI ACTGGG 2 cut(s) 54, 410
BmsI GCATC 1 cut(s) 475
BmuI ACTGGG 2 cut(s) 54, 410
BpuEI CTTGAG 1 cut(s) 708
BsaJI CCNNGG 1 cut(s) 447
BsaXI ACNNNNNCTCC 2 cut(s) 711, 741
Bsc4I CCNNNNNNNGG 2 cut(s) 448, 716
Bse1I ACTGG 2 cut(s) 49, 405
BseBI CCWGG 1 cut(s) 449
BseDI CCNNGG 1 cut(s) 447
BseGI GGATG 2 cut(s) 226, 397
BseLI CCNNNNNNNGG 2 cut(s) 448, 716
BseMII CTCAG 1 cut(s) 704
BseNI ACTGG 2 cut(s) 49, 405
BseXI GCAGC 2 cut(s) 130, 249
BsgI GTGCAG 1 cut(s) 172
BshFI GGCC 1 cut(s) 551
BshNI GGYRCC 1 cut(s) 104
BsiHKAI GWGCWC 1 cut(s) 724
BslFI GGGAC 3 cut(s) 425, 492, 588
BslI CCNNNNNNNGG 2 cut(s) 448, 716
BsmAI GTCTC 1 cut(s) 332
BsmFI GGGAC 3 cut(s) 425, 492, 588
BsmI GAATGC 1 cut(s) 554
BsnI GGCC 1 cut(s) 551
Bsp1286I GDGCHC 1 cut(s) 724
Bsp1407I TGTACA 1 cut(s) 676
Bsp143I GATC 3 cut(s) 327, 463, 702
BspACI CCGC 5 cut(s) 121, 488, 552, 606, 706
BspANI GGCC 1 cut(s) 551
BspCNI CTCAG 1 cut(s) 703
BspLI GGNNCC 2 cut(s) 106, 576
BspPI GGATC 2 cut(s) 458, 697
BspT107I GGYRCC 1 cut(s) 104
BsrGI TGTACA 1 cut(s) 676
BsrI ACTGG 2 cut(s) 49, 405
BssECI CCNNGG 1 cut(s) 447
BssMI GATC 3 cut(s) 327, 463, 702
Bst2UI CCWGG 1 cut(s) 449
Bst4CI ACNGT 1 cut(s) 208
Bst6I CTCTTC 1 cut(s) 141
BstAPI GCANNNNNTGC 1 cut(s) 623
BstAUI TGTACA 1 cut(s) 676
BstC8I GCNNGC 1 cut(s) 198
BstDEI CTNAG 2 cut(s) 344, 690
BstF5I GGATG 2 cut(s) 226, 397
BstKTI GATC 3 cut(s) 330, 466, 705
BstMAI GTCTC 1 cut(s) 332
BstMBI GATC 3 cut(s) 327, 463, 702
BstMWI GCNNNNNNNGC 2 cut(s) 614, 623
BstNI CCWGG 1 cut(s) 449
BstSCI CCNGG 1 cut(s) 447
BstV1I GCAGC 2 cut(s) 130, 249
BsuRI GGCC 1 cut(s) 551
BtsCI GGATG 2 cut(s) 226, 397
BtsIMutI CAGTG 1 cut(s) 340
Cac8I GCNNGC 1 cut(s) 198
Cfr13I GGNCC 1 cut(s) 575
Csp6I GTAC 1 cut(s) 677
CviAII CATG 7 cut(s) 101, 201, 325, 461, 547, 559, 716
CviJI RGCY 6 cut(s) 95, 248, 533, 551, 594, 722
CviKI_1 RGCY 6 cut(s) 95, 248, 533, 551, 594, 722
CviQI GTAC 1 cut(s) 677
DdeI CTNAG 2 cut(s) 344, 690
DpnI GATC 3 cut(s) 329, 465, 704
DpnII GATC 3 cut(s) 327, 463, 702
DraI TTTAAA 1 cut(s) 90
EaeI YGGCCR 1 cut(s) 549
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
EciI GGCGGA 1 cut(s) 695
Ecl136II GAGCTC 1 cut(s) 722
Eco24I GRGCYC 1 cut(s) 724
Eco47I GGWCC 1 cut(s) 575
Eco53kI GAGCTC 1 cut(s) 722
Eco57I CTGAAG 1 cut(s) 537
EcoICRI GAGCTC 1 cut(s) 722
EcoO109I RGGNCCY 1 cut(s) 575
EcoRII CCWGG 1 cut(s) 447
EcoT38I GRGCYC 1 cut(s) 724
FaeI CATG 7 cut(s) 104, 204, 328, 464, 550, 562, 719
FaqI GGGAC 3 cut(s) 425, 492, 588
FatI CATG 7 cut(s) 100, 200, 324, 460, 546, 558, 715
FbaI TGATCA 1 cut(s) 327
Fnu4HI GCNGC 5 cut(s) 119, 263, 489, 552, 606
FokI GGATG 2 cut(s) 213, 404
FriOI GRGCYC 1 cut(s) 724
Fsp4HI GCNGC 5 cut(s) 119, 263, 489, 552, 606
FspBI CTAG 3 cut(s) 218, 413, 579
GluI GCNGC 5 cut(s) 119, 263, 489, 552, 606
HaeIII GGCC 1 cut(s) 551
Hin1II CATG 7 cut(s) 104, 204, 328, 464, 550, 562, 719
HinfI GANTC 2 cut(s) 340, 637
HphI GGTGA 1 cut(s) 449
Hpy166II GTNNAC 1 cut(s) 679
Hpy188I TCNGA 1 cut(s) 517
Hpy188III TCNNGA 2 cut(s) 293, 700
Hpy8I GTNNAC 1 cut(s) 679
HpyAV CCTTC 2 cut(s) 512, 696
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4IV ACGT 1 cut(s) 158
HpyCH4V TGCA 4 cut(s) 153, 200, 265, 386
HpyF10VI GCNNNNNNNGC 2 cut(s) 614, 623
HpyF3I CTNAG 2 cut(s) 344, 690
HpySE526I ACGT 1 cut(s) 158
Hsp92II CATG 7 cut(s) 104, 204, 328, 464, 550, 562, 719
Ksp22I TGATCA 1 cut(s) 327
Kzo9I GATC 3 cut(s) 327, 463, 702
LmnI GCTCC 1 cut(s) 719
Lsp1109I GCAGC 2 cut(s) 130, 249
LweI GCATC 1 cut(s) 475
MaeI CTAG 3 cut(s) 218, 413, 579
MaeII ACGT 1 cut(s) 158
MalI GATC 3 cut(s) 329, 465, 704
MboI GATC 3 cut(s) 327, 463, 702
MboII GAAGA 2 cut(s) 158, 206
MhlI GDGCHC 1 cut(s) 724
MluCI AATT 4 cut(s) 137, 364, 431, 470
MlyI GAGTC 1 cut(s) 334
MnlI CCTC 4 cut(s) 235, 250, 366, 477
MseI TTAA 2 cut(s) 12, 89
MslI CAYNNNNRTG 1 cut(s) 102
MspA1I CMGCKG 1 cut(s) 121
MspR9I CCNGG 1 cut(s) 449
Mva1269I GAATGC 1 cut(s) 554
MvaI CCWGG 1 cut(s) 449
MwoI GCNNNNNNNGC 2 cut(s) 614, 623
NdeII GATC 3 cut(s) 327, 463, 702
NlaIII CATG 7 cut(s) 104, 204, 328, 464, 550, 562, 719
NlaIV GGNNCC 2 cut(s) 106, 576
PctI GAATGC 1 cut(s) 554
PfeI GAWTC 1 cut(s) 637
PflMI CCANNNNNTGG 1 cut(s) 716
PkrI GCNGC 5 cut(s) 120, 264, 490, 553, 607
PleI GAGTC 1 cut(s) 334
PpsI GAGTC 1 cut(s) 334
PpuMI RGGWCCY 1 cut(s) 575
Psp124BI GAGCTC 1 cut(s) 724
Psp5II RGGWCCY 1 cut(s) 575
Psp6I CCWGG 1 cut(s) 447
PspGI CCWGG 1 cut(s) 447
PspN4I GGNNCC 2 cut(s) 106, 576
PspPI GGNCC 1 cut(s) 575
PspPPI RGGWCCY 1 cut(s) 575
RsaI GTAC 1 cut(s) 678
RsaNI GTAC 1 cut(s) 677
RseI CAYNNNNRTG 1 cut(s) 102
SacI GAGCTC 1 cut(s) 724
SaqAI TTAA 2 cut(s) 12, 89
SatI GCNGC 5 cut(s) 119, 263, 489, 552, 606
Sau3AI GATC 3 cut(s) 327, 463, 702
Sau96I GGNCC 1 cut(s) 575
SchI GAGTC 1 cut(s) 334
ScrFI CCNGG 1 cut(s) 449
SduI GDGCHC 1 cut(s) 724
SetI ASST 6 cut(s) 161, 261, 350, 535, 580, 724
SfaNI GCATC 1 cut(s) 475
SinI GGWCC 1 cut(s) 575
SmiMI CAYNNNNRTG 1 cut(s) 102
SmlI CTYRAG 1 cut(s) 723
SmoI CTYRAG 1 cut(s) 723
Sse9I AATT 4 cut(s) 137, 364, 431, 470
SsiI CCGC 5 cut(s) 121, 488, 552, 606, 706
SspMI CTAG 3 cut(s) 218, 413, 579
SstI GAGCTC 1 cut(s) 724
StyD4I CCNGG 1 cut(s) 447
TaaI ACNGT 1 cut(s) 208
TaiI ACGT 1 cut(s) 161
TaqI TCGA 1 cut(s) 128
TasI AATT 4 cut(s) 137, 364, 431, 470
TatI WGTACW 1 cut(s) 676
TauI GCSGC 3 cut(s) 491, 554, 608
TfiI GAWTC 1 cut(s) 637
Tru1I TTAA 2 cut(s) 12, 89
Tru9I TTAA 2 cut(s) 12, 89
TscAI CASTG 1 cut(s) 340
TseI GCWGC 2 cut(s) 118, 262
TspDTI ATGAA 2 cut(s) 146, 547
TspRI CASTG 1 cut(s) 340
Van91I CCANNNNNTGG 1 cut(s) 716
VpaK11BI GGWCC 1 cut(s) 575
XspI CTAG 3 cut(s) 218, 413, 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.