RLG00000006429

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
7079855 .. 7081214
1360 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006429

Sequence Viewer

Length: 717 bp
ATGAGTAAGGTTTGTAGAACCAGTGATGAGATTGAAGCAGACAAGCTTGAGAAAGGAATACGTGCCTCCATAATGGAGATTGTTAAGAAAAGAGAACAAAAGGAAATGAAAATAACTGGGGAAACACAAATCTTGGGGAGTGATTTTCTGGGATTGCTTTTAAAGGCTCATCATGGTGCCAATGACAAGCAGCGGATTTCGATGAACGAATTGGTTGAAGAGTGCAGGACGTTTAACTTTGCTGGAAAAGAAACTACTAATATTTTGCTTGCATGGACTGTCGTTCTTCTAGGACTACATCCTTATTGGCAAGAGGAAGCCAGAAAGGAGGTGCTGCAACTATTTGGCAAACAAACTCCAAATCCTGATGGCATTTCCAAACTCAAAACTATGAGCATGATCATCGGTGAGACTCTAAGGTCATATCCTCCTGCTAATTTGCTTGTAAGGAGAGTTGCACGGGATGTTAGACTGGGAAAACTCCTAGTTCCTGCTGATGTTAAATTGCTTGTCCCAATCCTAGCATTTCACCATGATCCTCAATTATGGGGACAAGATGCGGCACTTTTCAAACCAGAGCGATTCTCTGAAGGGGTTGCTAAAGCTACTAATGATAATATGGCCGCATTCATGCCATTTGGATTGGGACCTAGAATTTTCTCACTATCCGCCCACAACATGGAGTTCAAGTATTTCTACACTCACTTTGAGCTGTGA

Protein Analysis

239

Amino Acids

27.03

Weight (kDa)

8.77

Isoelectric Point (pI)

35.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 9 - 219 1.2e-39 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000078)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g15240 FvH4_3g15270 FvH4_3g15280 FvH4_3g32750 FvH4_3g32760 FvH4_3g32760 FvH4_3g32880 FvH4_4g08190 FvH4_4g29160 FvH4_4g29370 FvH4_4g29400 FvH4_4g29420 FvH4_4g29420 FvH4_4g29420 FvH4_4g29430 FvH4_4g29440 FvH4_4g29450 FvH4_4g29450 FvH4_4g29450 FvH4_4g29460 FvH4_4g29461 FvH4_4g29462 FvH4_4g29463 FvH4_4g29480 FvH4_4g29481 FvH4_4g29482 FvH4_4g29483 FvH4_4g29484 FvH4_6g26720 FvH4_6g26720
malus_domestica MD00G1065200.v1.1 MD06G1145800.v1.1 MD06G1146000.v1.1 MD06G1146700.v1.1 MD13G1031000.v1.1 MD13G1033900.v1.1 MD13G1057000.v1.1 MD13G1057100.v1.1 MD13G1057200.v1.1 MD13G1057400.v1.1 MD13G1057800.v1.1 MD13G1058000.v1.1 MD13G1058100.v1.1 MD13G1058200.v1.1 MD13G1058300.v1.1 MD13G1058500.v1.1 MD13G1058600.v1.1 MD13G1058700.v1.1 MD16G1035700.v1.1 MD16G1056400.v1.1 MD16G1056600.v1.1 MD16G1056700.v1.1 MD16G1056900.v1.1 MD16G1058100.v1.1
prunus_persica Prupe.1G291100_v2.0.a1 Prupe.1G291200_v2.0.a1 Prupe.1G291500_v2.0.a1 Prupe.1G291600_v2.0.a1 Prupe.1G291700_v2.0.a1 Prupe.1G291800_v2.0.a1 Prupe.1G291900_v2.0.a1 Prupe.1G292000_v2.0.a1 Prupe.1G292100_v2.0.a1 Prupe.1G292400_v2.0.a1 Prupe.1G292500_v2.0.a1 Prupe.1G292600_v2.0.a1 Prupe.1G292700_v2.0.a1 Prupe.1G292800_v2.0.a1 Prupe.1G296000_v2.0.a1 Prupe.1G296100_v2.0.a1 Prupe.1G296300_v2.0.a1 Prupe.1G296600_v2.0.a1 Prupe.1G296900_v2.0.a1 Prupe.1G534600_v2.0.a1 Prupe.5G046700_v2.0.a1 Prupe.8G021800_v2.0.a1 Prupe.8G026400_v2.0.a1
pyrus_communis pycom06g13510 pycom06g13530 pycom06g13540 pycom06g13570 pycom06g13590 pycom06g13620 pycom13g02710 pycom13g02930 pycom13g05100 pycom13g05110 pycom13g05140 pycom13g05160 pycom13g05170 pycom13g05190 pycom13g05200 pycom13g05210 pycom13g05220 pycom16g03060 pycom16g04940 pycom16g04960 pycom16g04990 pycom16g05000 pycom16g05080
rosa_chinensis RchiOBHm_Chr1g0337981 RchiOBHm_Chr1g0337991 RchiOBHm_Chr1g0339431 RchiOBHm_Chr4g0402401 RchiOBHm_Chr4g0420571 RchiOBHm_Chr4g0420601 RchiOBHm_Chr4g0420611 RchiOBHm_Chr4g0420621 RchiOBHm_Chr4g0420631 RchiOBHm_Chr4g0437211 RchiOBHm_Chr4g0437221 RchiOBHm_Chr4g0437251 RchiOBHm_Chr4g0437431 RchiOBHm_Chr4g0437441 RchiOBHm_Chr4g0437491 RchiOBHm_Chr4g0437501 RchiOBHm_Chr4g0437511 RchiOBHm_Chr4g0437521 RchiOBHm_Chr4g0437531 RchiOBHm_Chr4g0437541 RchiOBHm_Chr4g0437551 RchiOBHm_Chr4g0437591 RchiOBHm_Chr4g0437631 RchiOBHm_Chr4g0437641 RchiOBHm_Chr4g0437671 RchiOBHm_Chr4g0437681 RchiOBHm_Chr4g0437711 RchiOBHm_Chr4g0437731 RchiOBHm_Chr4g0437741 RchiOBHm_Chr4g0437751 RchiOBHm_Chr5g0025681 RchiOBHm_Chr5g0025711 RchiOBHm_Chr5g0025731 RchiOBHm_Chr5g0059841 RchiOBHm_Chr6g0272651
rosa_laevigata RLG00000006420 RLG00000006421 RLG00000006423 RLG00000006426 RLG00000006427 RLG00000006428 RLG00000006429 RLG00000006431 RLG00000006433 RLG00000006434 RLG00000006435 RLG00000006436 RLG00000006437 RLG00000006455 RLG00000007746 RLG00000007747 RLG00000007748 RLG00000007749 RLG00000007750 RLG00000009091 RLG00000009092 RLG00000009095 RLG00000009096 RLG00000017856 RLG00000028094 RLG00000029230 RLG00000029231 RLG00000030008 RLG00000032859 RLG00000032860 RLG00000032861 RLG00000032865 RLG00000032868 RLG00000035332
rosa_multiflora Rmu_co7986016.1_g000001 Rmu_co8226539.1_g000001 Rmu_co8349613.1_g000001 Rmu_sc0000272.1_g000014 Rmu_sc0000591.1_g000003 Rmu_sc0000613.1_g000013 Rmu_sc0001629.1_g000022 Rmu_sc0001629.1_g000025 Rmu_sc0002131.1_g000027 Rmu_sc0002137.1_g000006 Rmu_sc0002137.1_g000014 Rmu_sc0002137.1_g000019 Rmu_sc0002472.1_g000002 Rmu_sc0002472.1_g000012 Rmu_sc0002472.1_g000018 Rmu_sc0002472.1_g000034 Rmu_sc0002472.1_g000040 Rmu_sc0002472.1_g000051 Rmu_sc0002638.1_g000005 Rmu_sc0002638.1_g000010 Rmu_sc0002638.1_g000025 Rmu_sc0002638.1_g000030 Rmu_sc0002638.1_g000037 Rmu_sc0002638.1_g000042 Rmu_sc0004339.1_g000019 Rmu_sc0005580.1_g000013 Rmu_sc0006617.1_g000002 Rmu_sc0006986.1_g000003 Rmu_sc0006986.1_g000017 Rmu_sc0008352.1_g000001 Rmu_sc0008352.1_g000002 Rmu_sc0009431.1_g000011 Rmu_sc0011080.1_g000003 Rmu_sc0011080.1_g000006 Rmu_sc0016549.1_g000001 Rmu_sc0016549.1_g000002 Rmu_sc0017154.1_g000001 Rmu_sc0017155.1_g000001 Rmu_sc0028438.1_g000001 Rmu_sc0041413.1_g000001 Rmu_ssc0000330.1_g000022
rosa_roxburghii Rroxscaffold_1G00020750 Rroxscaffold_1G00053460 Rroxscaffold_1G00054250 Rroxscaffold_1G00054260 Rroxscaffold_1G00054270 Rroxscaffold_1G00054290 Rroxscaffold_2G00120210 Rroxscaffold_4G00313460 Rroxscaffold_4G00313470 Rroxscaffold_4G00330630 Rroxscaffold_5G00347070 Rroxscaffold_5G00347110 Rroxscaffold_5G00378670 Rroxscaffold_5G00378690 Rroxscaffold_5G00378720 Rroxscaffold_5G00378730 Rroxscaffold_5G00378740 Rroxscaffold_5G00378760 Rroxscaffold_5G00378780 Rroxscaffold_5G00378790 Rroxscaffold_5G00378800 Rroxscaffold_5G00378810 Rroxscaffold_5G00378820 Rroxscaffold_5G00378840 Rroxscaffold_5G00378860 Rroxscaffold_5G00378870 Rroxscaffold_7G00196060
rosa_rugosa Rorug01G0142200.1 Rorug01G0332800 Rorug02G0012200 Rorug02G0248300 Rorug03G0219000 Rorug03G0219100 Rorug03G0219200 Rorug04G0035100 Rorug04G0301500 Rorug04G0301500 Rorug04G0301700 Rorug04G0301800 Rorug04G0301800 Rorug04G0301900 Rorug04G0302000 Rorug04G0302500 Rorug04G0302600 Rorug04G0302700 Rorug04G0302800 Rorug04G0302900 Rorug04G0303000 Rorug04G0303000 Rorug04G0303100 Rorug04G0303200 Rorug04G0303300 Rorug04G0303400 Rorug04G0303500 Rorug04G0303500 Rorug05G0087800 Rorug05G0088200 Rorug05G0326300 Rorug06G0173000
rosa_samantha Rh2AG222400 Rh4DG224800 Rh4DG359900 Rh4DG360000 Rh4DG360100 Rh4DG360200 Rh4DG360300 Rh4DG360500 Rh4DG360700 Rh4DG360800 Rh4DG360900 Rh4DG361000 Rh5DG177900 Rh5DG178200 Rh5DG178400 Rh6CG187800
rosa_wichuraiana Rw1G013580 Rw4G009020 Rw4G019580 Rw4G030990 Rw4G031000 Rw4G031220 Rw4G031230 Rw4G031240 Rw4G031250 Rw4G031260 Rw4G031270 Rw4G031280 Rw4G031290 Rw4G031310 Rw4G031320 Rw4G031330 Rw4G031340 Rw4G031360 Rw4G031370 Rw5G016310 Rw5G016320 Rw5G016330 Rw5G036760 Rw6G016090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 418
AccB1I GGYRCC 1 cut(s) 176
AccB7I CCANNNNNTGG 1 cut(s) 679
AciI CCGC 4 cut(s) 193, 560, 624, 669
AclWI GGATC 1 cut(s) 530
AcoI YGGCCR 1 cut(s) 621
AcsI RAATTY 1 cut(s) 654
AcuI CTGAAG 1 cut(s) 609
AfiI CCNNNNNNNGG 1 cut(s) 679
AgsI TTSAA 4 cut(s) 35, 218, 571, 688
AluBI AGCT 3 cut(s) 46, 605, 712
AluI AGCT 3 cut(s) 46, 605, 712
Alw26I GTCTC 1 cut(s) 404
AlwI GGATC 1 cut(s) 530
AoxI GGCC 1 cut(s) 621
ApeKI GCWGC 2 cut(s) 190, 334
ApoI RAATTY 1 cut(s) 654
AspS9I GGNCC 1 cut(s) 647
AsuHPI GGTGA 2 cut(s) 419, 521
AvaII GGWCC 1 cut(s) 647
BanI GGYRCC 1 cut(s) 176
BbvI GCAGC 2 cut(s) 202, 321
BccI CCATC 1 cut(s) 362
BcgI CGANNNNNNTGC 2 cut(s) 385, 419
BclI TGATCA 1 cut(s) 399
BcoDI GTCTC 1 cut(s) 404
BfaI CTAG 4 cut(s) 290, 485, 521, 651
BisI GCNGC 4 cut(s) 191, 335, 561, 624
BlsI GCNGC 4 cut(s) 192, 336, 562, 625
Bme18I GGWCC 1 cut(s) 647
BmgT120I GGNCC 1 cut(s) 647
BmiI GGNNCC 2 cut(s) 178, 648
BmrI ACTGGG 2 cut(s) 126, 482
BmsI GCATC 1 cut(s) 547
BmuI ACTGGG 2 cut(s) 126, 482
BplI GAGNNNNNCTC 2 cut(s) 569, 601
BpuEI CTTGAG 1 cut(s) 68
BsaAI YACGTR 1 cut(s) 62
BsaXI ACNNNNNCTCC 2 cut(s) 674, 704
Bsc4I CCNNNNNNNGG 1 cut(s) 679
Bse1I ACTGG 3 cut(s) 21, 121, 477
BseGI GGATG 2 cut(s) 298, 469
BseLI CCNNNNNNNGG 1 cut(s) 679
BseNI ACTGG 3 cut(s) 21, 121, 477
BseXI GCAGC 2 cut(s) 202, 321
BsgI GTGCAG 1 cut(s) 244
BshFI GGCC 1 cut(s) 623
BshNI GGYRCC 1 cut(s) 176
BslFI GGGAC 3 cut(s) 497, 564, 660
BslI CCNNNNNNNGG 1 cut(s) 679
BsmAI GTCTC 1 cut(s) 404
BsmFI GGGAC 3 cut(s) 497, 564, 660
BsmI GAATGC 1 cut(s) 626
BsnI GGCC 1 cut(s) 623
Bsp143I GATC 2 cut(s) 399, 535
BspACI CCGC 4 cut(s) 193, 560, 624, 669
BspANI GGCC 1 cut(s) 623
BspLI GGNNCC 2 cut(s) 178, 648
BspPI GGATC 1 cut(s) 530
BspT107I GGYRCC 1 cut(s) 176
BsrI ACTGG 3 cut(s) 21, 121, 477
BssMI GATC 2 cut(s) 399, 535
Bst4CI ACNGT 1 cut(s) 280
Bst6I CTCTTC 1 cut(s) 213
BstBAI YACGTR 1 cut(s) 62
BstC8I GCNNGC 1 cut(s) 270
BstDEI CTNAG 1 cut(s) 416
BstF5I GGATG 2 cut(s) 298, 469
BstKTI GATC 2 cut(s) 402, 538
BstMAI GTCTC 1 cut(s) 404
BstMBI GATC 2 cut(s) 399, 535
BstV1I GCAGC 2 cut(s) 202, 321
BsuRI GGCC 1 cut(s) 623
BtsCI GGATG 2 cut(s) 298, 469
BtsIMutI CAGTG 1 cut(s) 28
Cac8I GCNNGC 1 cut(s) 270
Cfr13I GGNCC 1 cut(s) 647
CviAII CATG 6 cut(s) 173, 273, 397, 533, 631, 679
CviJI RGCY 6 cut(s) 46, 167, 320, 605, 623, 712
CviKI_1 RGCY 6 cut(s) 46, 167, 320, 605, 623, 712
DdeI CTNAG 1 cut(s) 416
DpnI GATC 2 cut(s) 401, 537
DpnII GATC 2 cut(s) 399, 535
DraI TTTAAA 1 cut(s) 162
DrdI GACNNNNNNGTC 1 cut(s) 418
DseDI GACNNNNNNGTC 1 cut(s) 418
EaeI YGGCCR 1 cut(s) 621
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
EciI GGCGGA 1 cut(s) 658
Eco47I GGWCC 1 cut(s) 647
Eco57I CTGAAG 1 cut(s) 609
EcoO109I RGGNCCY 1 cut(s) 647
FaeI CATG 6 cut(s) 176, 276, 400, 536, 634, 682
FaqI GGGAC 3 cut(s) 497, 564, 660
FatI CATG 6 cut(s) 172, 272, 396, 532, 630, 678
FbaI TGATCA 1 cut(s) 399
Fnu4HI GCNGC 4 cut(s) 191, 335, 561, 624
FokI GGATG 2 cut(s) 285, 476
Fsp4HI GCNGC 4 cut(s) 191, 335, 561, 624
FspBI CTAG 4 cut(s) 290, 485, 521, 651
GluI GCNGC 4 cut(s) 191, 335, 561, 624
HaeIII GGCC 1 cut(s) 623
Hin1II CATG 6 cut(s) 176, 276, 400, 536, 634, 682
HindIII AAGCTT 1 cut(s) 44
HinfI GANTC 2 cut(s) 412, 582
HphI GGTGA 2 cut(s) 419, 521
Hpy188I TCNGA 1 cut(s) 589
Hpy188III TCNNGA 1 cut(s) 365
HpyAV CCTTC 1 cut(s) 584
HpyCH4III ACNGT 1 cut(s) 280
HpyCH4IV ACGT 2 cut(s) 61, 230
HpyCH4V TGCA 4 cut(s) 225, 272, 337, 458
HpyF3I CTNAG 1 cut(s) 416
HpySE526I ACGT 2 cut(s) 61, 230
Hsp92II CATG 6 cut(s) 176, 276, 400, 536, 634, 682
Ksp22I TGATCA 1 cut(s) 399
Kzo9I GATC 2 cut(s) 399, 535
Lsp1109I GCAGC 2 cut(s) 202, 321
LweI GCATC 1 cut(s) 547
MaeI CTAG 4 cut(s) 290, 485, 521, 651
MaeII ACGT 2 cut(s) 61, 230
MalI GATC 2 cut(s) 401, 537
MboI GATC 2 cut(s) 399, 535
MboII GAAGA 2 cut(s) 230, 278
MluCI AATT 5 cut(s) 209, 436, 503, 542, 654
MlyI GAGTC 1 cut(s) 406
MnlI CCTC 5 cut(s) 76, 307, 322, 438, 549
MseI TTAA 4 cut(s) 84, 161, 234, 501
MslI CAYNNNNRTG 1 cut(s) 174
MspA1I CMGCKG 1 cut(s) 193
Mva1269I GAATGC 1 cut(s) 626
NdeII GATC 2 cut(s) 399, 535
NlaIII CATG 6 cut(s) 176, 276, 400, 536, 634, 682
NlaIV GGNNCC 2 cut(s) 178, 648
PctI GAATGC 1 cut(s) 626
PfeI GAWTC 1 cut(s) 582
PflMI CCANNNNNTGG 1 cut(s) 679
PkrI GCNGC 4 cut(s) 192, 336, 562, 625
PleI GAGTC 1 cut(s) 406
PpsI GAGTC 1 cut(s) 406
Ppu21I YACGTR 1 cut(s) 62
PpuMI RGGWCCY 1 cut(s) 647
Psp5II RGGWCCY 1 cut(s) 647
PspN4I GGNNCC 2 cut(s) 178, 648
PspPI GGNCC 1 cut(s) 647
PspPPI RGGWCCY 1 cut(s) 647
RseI CAYNNNNRTG 1 cut(s) 174
SaqAI TTAA 4 cut(s) 84, 161, 234, 501
SatI GCNGC 4 cut(s) 191, 335, 561, 624
Sau3AI GATC 2 cut(s) 399, 535
Sau96I GGNCC 1 cut(s) 647
SchI GAGTC 1 cut(s) 406
SetI ASST 9 cut(s) 12, 48, 64, 233, 333, 422, 607, 652, 714
SfaNI GCATC 1 cut(s) 547
SinI GGWCC 1 cut(s) 647
SmiMI CAYNNNNRTG 1 cut(s) 174
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
Sse9I AATT 5 cut(s) 209, 436, 503, 542, 654
SsiI CCGC 4 cut(s) 193, 560, 624, 669
SspI AATATT 1 cut(s) 262
SspMI CTAG 4 cut(s) 290, 485, 521, 651
TaaI ACNGT 1 cut(s) 280
TaiI ACGT 2 cut(s) 64, 233
TaqI TCGA 1 cut(s) 200
TasI AATT 5 cut(s) 209, 436, 503, 542, 654
TauI GCSGC 2 cut(s) 563, 626
TfiI GAWTC 1 cut(s) 582
Tru1I TTAA 4 cut(s) 84, 161, 234, 501
Tru9I TTAA 4 cut(s) 84, 161, 234, 501
TscAI CASTG 1 cut(s) 28
TseI GCWGC 2 cut(s) 190, 334
TspDTI ATGAA 3 cut(s) 122, 218, 619
TspRI CASTG 1 cut(s) 28
Van91I CCANNNNNTGG 1 cut(s) 679
VpaK11BI GGWCC 1 cut(s) 647
XapI RAATTY 1 cut(s) 654
XspI CTAG 4 cut(s) 290, 485, 521, 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.