MD13G1033900.v1.1

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0000078
Physical Location & Seq
Forward (+)
2376989 .. 2379265
2277 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1033900.v1.1.491

Sequence Viewer

Length: 1551 bp
ATGAAATCTTTGGGAGGCCTAGAGATCATTCTTTCAAGCCTTCTGTGTCTGCTCCTTCTCTTTGCTCTCCTCAAGATCTTTCACAATCTATGGTGGTCTCCCATTCGACTACAGAATCTGGTGGCTCTGCAGGGAATCAAGGGCCCTTCTTACCGATTCGTCCACGGAAACACCAAAGAGATCTCCAGCATGCAAGAGGAAGCCATGAGCAGGCCCAAAAGCTTATCACATGACATATTTTCTCGAGTTCAACCTCACATCCACTTGTGGACCAAGAAATATGGAGCAAATTTTCTTCAATGGTATGGTTCTCAAGCCCAGTTGGTCATCACAGAGCCAGAACTGTGCAAAGAGATACTTACTAACAAAGATAGAGCTTATCCCAAAAGCGAGCCGAAAAGCTATCTGAGAAGGCTATTAGGAGATGGACTTGTGGTAAGTGATGGTGAAAAATGGGCTAAGATGAGAAAGTTAGCCAACTATGCCTTCCACGGAGAGATCTTAAAGGGTATGGCTCCAACAGTGATAGCTAGTGCTGAGACGATGCTAGAAACTTGGAAAGAACACGACGGCCAAGAGATCGATGTGTTTGAAGAATTTAGGTTGTACACCTCAGAAGTGATTTCCAAGACGGCCTTTGGCAGCAGCTACTTAGAAGGGAAGAAAATTTTCGATATTCTGGAGAAGTTAGGCTACTTATCATTCAAAAATGCGTTCAAGCTCAGGTTTCCCGGCATTAGTAAGTTTATTAAATCCAATGATGAGATCGAATCAGCAAAGCTCGAGAAAAGTATACGCGACTCCATCATGGAGATGATCAAGAACAGAGAAAATAAGGCAATGGCTGGAGAAGAAGACAGTTTTGGGAATGATTTTCTTGGGGTACTTTTAAAAGCTCATCACGACACCGACGAGAAAAAGAGGATTTCGATTGATGAAATTGTTGACGAGTGCAAGACATTTTACTTTGCTGGACAAGAAACCACTAATAGTGCACTTGCTTGGACTGTGTTTCTTCTAGCAATCCATACCGATTGGCAAGAGGAAGCAAGAAAGGAGGTGATCCAAATATTTGGGAAACAAAATCCGAATCTTGATGGCATTGCCAAGCTAAAAACTATGAGCATGATCTTCAACGAGTCGCTAAGGTTATATCCACCGGTAGTTACCATTGAGAGGAAAATTCGAAGGGAAGTTAAGCTGGGAAAACATGTTCTTCCTGCTAATGTTGAAGTAACCATTCCATGCTTAGCCCTTCAGCACGAGCCTCAAATTTGGGGAGAAGATGTGCTACTTTTCAAACCGGAGCGATTCTCAGAAGGGGTTGCTAAAGCTACAAAGAACAACATAGCCGCATTCTTACCATGGGGATTGGGACCTCGGAGTTGTGTGGGATCAAATTTTGCAGCCATTGAAACAAAGATTGTTCTGTCGATGATTCTACAACGCTTCTCGTTCACACTTTCCCCAGCCTACATCCACTCCCCCTATCGGCTTCTTACAGTTCGGCCGCAACATGGAGTTCAAGTAATGCTGCACTCGCTTACATGA

Protein Analysis

517

Amino Acids

58.8

Weight (kDa)

8.78

Isoelectric Point (pI)

42.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 89 - 490 8.8e-80 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000078)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g15240 FvH4_3g15270 FvH4_3g15280 FvH4_3g32750 FvH4_3g32760 FvH4_3g32760 FvH4_3g32880 FvH4_4g08190 FvH4_4g29160 FvH4_4g29370 FvH4_4g29400 FvH4_4g29420 FvH4_4g29420 FvH4_4g29420 FvH4_4g29430 FvH4_4g29440 FvH4_4g29450 FvH4_4g29450 FvH4_4g29450 FvH4_4g29460 FvH4_4g29461 FvH4_4g29462 FvH4_4g29463 FvH4_4g29480 FvH4_4g29481 FvH4_4g29482 FvH4_4g29483 FvH4_4g29484 FvH4_6g26720 FvH4_6g26720
malus_domestica MD00G1065200.v1.1 MD06G1145800.v1.1 MD06G1146000.v1.1 MD06G1146700.v1.1 MD13G1031000.v1.1 MD13G1033900.v1.1 MD13G1057000.v1.1 MD13G1057100.v1.1 MD13G1057200.v1.1 MD13G1057400.v1.1 MD13G1057800.v1.1 MD13G1058000.v1.1 MD13G1058100.v1.1 MD13G1058200.v1.1 MD13G1058300.v1.1 MD13G1058500.v1.1 MD13G1058600.v1.1 MD13G1058700.v1.1 MD16G1035700.v1.1 MD16G1056400.v1.1 MD16G1056600.v1.1 MD16G1056700.v1.1 MD16G1056900.v1.1 MD16G1058100.v1.1
prunus_persica Prupe.1G291100_v2.0.a1 Prupe.1G291200_v2.0.a1 Prupe.1G291500_v2.0.a1 Prupe.1G291600_v2.0.a1 Prupe.1G291700_v2.0.a1 Prupe.1G291800_v2.0.a1 Prupe.1G291900_v2.0.a1 Prupe.1G292000_v2.0.a1 Prupe.1G292100_v2.0.a1 Prupe.1G292400_v2.0.a1 Prupe.1G292500_v2.0.a1 Prupe.1G292600_v2.0.a1 Prupe.1G292700_v2.0.a1 Prupe.1G292800_v2.0.a1 Prupe.1G296000_v2.0.a1 Prupe.1G296100_v2.0.a1 Prupe.1G296300_v2.0.a1 Prupe.1G296600_v2.0.a1 Prupe.1G296900_v2.0.a1 Prupe.1G534600_v2.0.a1 Prupe.5G046700_v2.0.a1 Prupe.8G021800_v2.0.a1 Prupe.8G026400_v2.0.a1
pyrus_communis pycom06g13510 pycom06g13530 pycom06g13540 pycom06g13570 pycom06g13590 pycom06g13620 pycom13g02710 pycom13g02930 pycom13g05100 pycom13g05110 pycom13g05140 pycom13g05160 pycom13g05170 pycom13g05190 pycom13g05200 pycom13g05210 pycom13g05220 pycom16g03060 pycom16g04940 pycom16g04960 pycom16g04990 pycom16g05000 pycom16g05080
rosa_chinensis RchiOBHm_Chr1g0337981 RchiOBHm_Chr1g0337991 RchiOBHm_Chr1g0339431 RchiOBHm_Chr4g0402401 RchiOBHm_Chr4g0420571 RchiOBHm_Chr4g0420601 RchiOBHm_Chr4g0420611 RchiOBHm_Chr4g0420621 RchiOBHm_Chr4g0420631 RchiOBHm_Chr4g0437211 RchiOBHm_Chr4g0437221 RchiOBHm_Chr4g0437251 RchiOBHm_Chr4g0437431 RchiOBHm_Chr4g0437441 RchiOBHm_Chr4g0437491 RchiOBHm_Chr4g0437501 RchiOBHm_Chr4g0437511 RchiOBHm_Chr4g0437521 RchiOBHm_Chr4g0437531 RchiOBHm_Chr4g0437541 RchiOBHm_Chr4g0437551 RchiOBHm_Chr4g0437591 RchiOBHm_Chr4g0437631 RchiOBHm_Chr4g0437641 RchiOBHm_Chr4g0437671 RchiOBHm_Chr4g0437681 RchiOBHm_Chr4g0437711 RchiOBHm_Chr4g0437731 RchiOBHm_Chr4g0437741 RchiOBHm_Chr4g0437751 RchiOBHm_Chr5g0025681 RchiOBHm_Chr5g0025711 RchiOBHm_Chr5g0025731 RchiOBHm_Chr5g0059841 RchiOBHm_Chr6g0272651
rosa_laevigata RLG00000006420 RLG00000006421 RLG00000006423 RLG00000006426 RLG00000006427 RLG00000006428 RLG00000006429 RLG00000006431 RLG00000006433 RLG00000006434 RLG00000006435 RLG00000006436 RLG00000006437 RLG00000006455 RLG00000007746 RLG00000007747 RLG00000007748 RLG00000007749 RLG00000007750 RLG00000009091 RLG00000009092 RLG00000009095 RLG00000009096 RLG00000017856 RLG00000028094 RLG00000029230 RLG00000029231 RLG00000030008 RLG00000032859 RLG00000032860 RLG00000032861 RLG00000032865 RLG00000032868 RLG00000035332
rosa_multiflora Rmu_co7986016.1_g000001 Rmu_co8226539.1_g000001 Rmu_co8349613.1_g000001 Rmu_sc0000272.1_g000014 Rmu_sc0000591.1_g000003 Rmu_sc0000613.1_g000013 Rmu_sc0001629.1_g000022 Rmu_sc0001629.1_g000025 Rmu_sc0002131.1_g000027 Rmu_sc0002137.1_g000006 Rmu_sc0002137.1_g000014 Rmu_sc0002137.1_g000019 Rmu_sc0002472.1_g000002 Rmu_sc0002472.1_g000012 Rmu_sc0002472.1_g000018 Rmu_sc0002472.1_g000034 Rmu_sc0002472.1_g000040 Rmu_sc0002472.1_g000051 Rmu_sc0002638.1_g000005 Rmu_sc0002638.1_g000010 Rmu_sc0002638.1_g000025 Rmu_sc0002638.1_g000030 Rmu_sc0002638.1_g000037 Rmu_sc0002638.1_g000042 Rmu_sc0004339.1_g000019 Rmu_sc0005580.1_g000013 Rmu_sc0006617.1_g000002 Rmu_sc0006986.1_g000003 Rmu_sc0006986.1_g000017 Rmu_sc0008352.1_g000001 Rmu_sc0008352.1_g000002 Rmu_sc0009431.1_g000011 Rmu_sc0011080.1_g000003 Rmu_sc0011080.1_g000006 Rmu_sc0016549.1_g000001 Rmu_sc0016549.1_g000002 Rmu_sc0017154.1_g000001 Rmu_sc0017155.1_g000001 Rmu_sc0028438.1_g000001 Rmu_sc0041413.1_g000001 Rmu_ssc0000330.1_g000022
rosa_roxburghii Rroxscaffold_1G00020750 Rroxscaffold_1G00053460 Rroxscaffold_1G00054250 Rroxscaffold_1G00054260 Rroxscaffold_1G00054270 Rroxscaffold_1G00054290 Rroxscaffold_2G00120210 Rroxscaffold_4G00313460 Rroxscaffold_4G00313470 Rroxscaffold_4G00330630 Rroxscaffold_5G00347070 Rroxscaffold_5G00347110 Rroxscaffold_5G00378670 Rroxscaffold_5G00378690 Rroxscaffold_5G00378720 Rroxscaffold_5G00378730 Rroxscaffold_5G00378740 Rroxscaffold_5G00378760 Rroxscaffold_5G00378780 Rroxscaffold_5G00378790 Rroxscaffold_5G00378800 Rroxscaffold_5G00378810 Rroxscaffold_5G00378820 Rroxscaffold_5G00378840 Rroxscaffold_5G00378860 Rroxscaffold_5G00378870 Rroxscaffold_7G00196060
rosa_rugosa Rorug01G0142200.1 Rorug01G0332800 Rorug02G0012200 Rorug02G0248300 Rorug03G0219000 Rorug03G0219100 Rorug03G0219200 Rorug04G0035100 Rorug04G0301500 Rorug04G0301500 Rorug04G0301700 Rorug04G0301800 Rorug04G0301800 Rorug04G0301900 Rorug04G0302000 Rorug04G0302500 Rorug04G0302600 Rorug04G0302700 Rorug04G0302800 Rorug04G0302900 Rorug04G0303000 Rorug04G0303000 Rorug04G0303100 Rorug04G0303200 Rorug04G0303300 Rorug04G0303400 Rorug04G0303500 Rorug04G0303500 Rorug05G0087800 Rorug05G0088200 Rorug05G0326300 Rorug06G0173000
rosa_samantha Rh2AG222400 Rh4DG224800 Rh4DG359900 Rh4DG360000 Rh4DG360100 Rh4DG360200 Rh4DG360300 Rh4DG360500 Rh4DG360700 Rh4DG360800 Rh4DG360900 Rh4DG361000 Rh5DG177900 Rh5DG178200 Rh5DG178400 Rh6CG187800
rosa_wichuraiana Rw1G013580 Rw4G009020 Rw4G019580 Rw4G030990 Rw4G031000 Rw4G031220 Rw4G031230 Rw4G031240 Rw4G031250 Rw4G031260 Rw4G031270 Rw4G031280 Rw4G031290 Rw4G031310 Rw4G031320 Rw4G031330 Rw4G031340 Rw4G031360 Rw4G031370 Rw5G016310 Rw5G016320 Rw5G016330 Rw5G036760 Rw6G016090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 793
AccII CGCG 1 cut(s) 798
AciI CCGC 2 cut(s) 1353, 1511
AclWI GGATC 2 cut(s) 1057, 1402
AcoI YGGCCR 2 cut(s) 571, 1508
AcsI RAATTY 6 cut(s) 289, 596, 666, 1182, 1272, 1399
AcuI CTGAAG 1 cut(s) 1241
AfaI GTAC 2 cut(s) 608, 885
AfiI CCNNNNNNNGG 4 cut(s) 210, 1176, 1491, 1517
AflIII ACRYGT 1 cut(s) 1210
AgeI ACCGGT 1 cut(s) 1159
AjuI GAANNNNNNNTTGG 4 cut(s) 470, 502, 846, 878
AloI GAACNNNNNNTCC 2 cut(s) 1197, 1229
Alw21I GWGCWC 1 cut(s) 997
Alw26I GTCTC 2 cut(s) 102, 533
Alw44I GTGCAC 1 cut(s) 993
AlwI GGATC 2 cut(s) 1057, 1402
AlwNI CAGNNNCTG 1 cut(s) 118
Ama87I CYCGRG 2 cut(s) 243, 782
AoxI GGCC 6 cut(s) 16, 142, 212, 571, 633, 1508
ApaI GGGCCC 1 cut(s) 146
ApaLI GTGCAC 1 cut(s) 993
ApeKI GCWGC 4 cut(s) 642, 645, 1406, 1534
ApoI RAATTY 6 cut(s) 289, 596, 666, 1182, 1272, 1399
AsiGI ACCGGT 1 cut(s) 1159
Asp700I GAANNNNTTC 1 cut(s) 668
AspS9I GGNCC 5 cut(s) 142, 143, 213, 270, 1376
AsuC2I CCSGG 1 cut(s) 732
AsuHPI GGTGA 2 cut(s) 458, 1072
AsuII TTCGAA 1 cut(s) 1186
AvaI CYCGRG 2 cut(s) 243, 782
AvaII GGWCC 2 cut(s) 270, 1376
BaeGI GKGCMC 2 cut(s) 146, 997
BanII GRGCYC 1 cut(s) 146
BarI GAAGNNNNNNTAC 4 cut(s) 677, 709, 1275, 1307
BauI CACGAG 1 cut(s) 1262
BbsI GAAGAC 1 cut(s) 861
Bbv12I GWGCWC 1 cut(s) 997
BbvI GCAGC 4 cut(s) 654, 657, 1418, 1521
BccI CCATC 4 cut(s) 419, 437, 812, 1091
BceAI ACGGC 2 cut(s) 586, 648
BclI TGATCA 1 cut(s) 816
BcnI CCSGG 1 cut(s) 732
BcoDI GTCTC 2 cut(s) 102, 533
BfaI CTAG 4 cut(s) 20, 531, 548, 1019
BfmI CTRYAG 2 cut(s) 110, 128
BglII AGATCT 3 cut(s) 75, 180, 498
BisI GCNGC 6 cut(s) 643, 646, 1353, 1407, 1511, 1535
BlpI GCTNAGC 1 cut(s) 1249
BlsI GCNGC 6 cut(s) 644, 647, 1354, 1408, 1512, 1536
Bme1390I CCNGG 1 cut(s) 732
Bme18I GGWCC 2 cut(s) 270, 1376
BmeT110I CYCGRG 2 cut(s) 243, 782
BmgT120I GGNCC 5 cut(s) 142, 143, 213, 270, 1376
BmiI GGNNCC 3 cut(s) 144, 516, 1377
BmrFI CCNGG 1 cut(s) 732
BmrI ACTGGG 1 cut(s) 313
BmsI GCATC 1 cut(s) 534
BmuI ACTGGG 1 cut(s) 313
BpiI GAAGAC 1 cut(s) 861
BplI GAGNNNNNCTC 2 cut(s) 1298, 1330
BpmI CTGGAG 3 cut(s) 169, 701, 867
Bpu10I CCTNAGC 2 cut(s) 722, 1145
Bpu1102I GCTNAGC 1 cut(s) 1249
Bpu14I TTCGAA 1 cut(s) 1186
BpuEI CTTGAG 2 cut(s) 56, 297
BpuMI CCSGG 1 cut(s) 732
Bsa29I ATCGAT 1 cut(s) 582
BsaI GGTCTC 1 cut(s) 102
BsaJI CCNNGG 4 cut(s) 163, 490, 1364, 1379
BsaWI WCCGGW 2 cut(s) 1159, 1303
BsaXI ACNNNNNCTCC 6 cut(s) 1272, 1302, 1466, 1496, 1512, 1542
Bsc4I CCNNNNNNNGG 4 cut(s) 210, 1176, 1491, 1517
Bse118I RCCGGY 1 cut(s) 1159
Bse1I ACTGG 1 cut(s) 319
Bse3DI GCAATG 2 cut(s) 846, 1101
BseCI ATCGAT 1 cut(s) 582
BseDI CCNNGG 4 cut(s) 163, 490, 1364, 1379
BseGI GGATG 2 cut(s) 258, 1476
BseLI CCNNNNNNNGG 4 cut(s) 210, 1176, 1491, 1517
BseMI GCAATG 2 cut(s) 846, 1101
BseMII CTCAG 5 cut(s) 398, 528, 627, 736, 1329
BseNI ACTGG 1 cut(s) 319
BseRI GAGGAG 1 cut(s) 59
BseSI GKGCMC 2 cut(s) 146, 997
BseX3I CGGCCG 1 cut(s) 1508
BseXI GCAGC 4 cut(s) 654, 657, 1418, 1521
BseYI CCCAGC 2 cut(s) 1201, 1468
BsgI GTGCAG 1 cut(s) 1520
Bsh1236I CGCG 1 cut(s) 798
Bsh1285I CGRYCG 1 cut(s) 1511
BshFI GGCC 6 cut(s) 18, 144, 214, 573, 635, 1510
BshTI ACCGGT 1 cut(s) 1159
BshVI ATCGAT 1 cut(s) 582
BsiEI CGRYCG 1 cut(s) 1511
BsiHKAI GWGCWC 1 cut(s) 997
BsiHKCI CYCGRG 2 cut(s) 243, 782
BsiSI CCGG 3 cut(s) 732, 1160, 1304
BslFI GGGAC 1 cut(s) 1389
BslI CCNNNNNNNGG 4 cut(s) 210, 1176, 1491, 1517
BsmAI GTCTC 2 cut(s) 102, 533
BsmBI CGTCTC 1 cut(s) 533
BsmFI GGGAC 1 cut(s) 1389
BsmI GAATGC 1 cut(s) 1355
BsnI GGCC 6 cut(s) 18, 144, 214, 573, 635, 1510
Bso31I GGTCTC 1 cut(s) 102
BsoBI CYCGRG 2 cut(s) 243, 782
Bsp119I TTCGAA 1 cut(s) 1186
Bsp120I GGGCCC 1 cut(s) 142
Bsp1286I GDGCHC 2 cut(s) 146, 997
Bsp1407I TGTACA 1 cut(s) 606
Bsp1720I GCTNAGC 1 cut(s) 1249
Bsp19I CCATGG 1 cut(s) 1364
BspACI CCGC 2 cut(s) 1353, 1511
BspANI GGCC 6 cut(s) 18, 144, 214, 573, 635, 1510
BspCNI CTCAG 5 cut(s) 399, 529, 626, 735, 1328
BspDI ATCGAT 1 cut(s) 582
BspFNI CGCG 1 cut(s) 798
BspLI GGNNCC 3 cut(s) 144, 516, 1377
BspMAI CTGCAG 1 cut(s) 132
BspPI GGATC 2 cut(s) 1057, 1402
BspT104I TTCGAA 1 cut(s) 1186
BspTNI GGTCTC 1 cut(s) 102
BsrDI GCAATG 2 cut(s) 846, 1101
BsrFI RCCGGY 1 cut(s) 1159
BsrGI TGTACA 1 cut(s) 606
BsrI ACTGG 1 cut(s) 319
BssAI RCCGGY 1 cut(s) 1159
BssECI CCNNGG 4 cut(s) 163, 490, 1364, 1379
BssNAI GTATAC 1 cut(s) 794
BssSI CACGAG 1 cut(s) 1262
BssT1I CCWWGG 1 cut(s) 1364
Bst1107I GTATAC 1 cut(s) 794
Bst2BI CACGAG 1 cut(s) 1262
Bst4CI ACNGT 5 cut(s) 345, 523, 860, 1009, 1504
BstAUI TGTACA 1 cut(s) 606
BstBI TTCGAA 1 cut(s) 1186
BstC8I GCNNGC 3 cut(s) 191, 212, 392
BstDEI CTNAG 9 cut(s) 407, 459, 537, 613, 652, 722, 1145, 1249, 1315
BstDSI CCRYGG 3 cut(s) 163, 490, 1364
BstF5I GGATG 2 cut(s) 258, 1476
BstFNI CGCG 1 cut(s) 798
BstMAI GTCTC 2 cut(s) 102, 533
BstMCI CGRYCG 1 cut(s) 1511
BstMWI GCNNNNNNNGC 2 cut(s) 482, 1540
BstNSI RCATGY 2 cut(s) 193, 1214
BstSCI CCNGG 1 cut(s) 730
BstSFI CTRYAG 2 cut(s) 110, 128
BstSLI GKGCMC 2 cut(s) 146, 997
BstUI CGCG 1 cut(s) 798
BstV1I GCAGC 4 cut(s) 654, 657, 1418, 1521
BstV2I GAAGAC 1 cut(s) 861
BstX2I RGATCY 3 cut(s) 75, 180, 498
BstXI CCANNNNNNTGG 1 cut(s) 1073
BstYI RGATCY 3 cut(s) 75, 180, 498
BstZ17I GTATAC 1 cut(s) 794
BstZI CGGCCG 1 cut(s) 1508
Bsu15I ATCGAT 1 cut(s) 582
BsuRI GGCC 6 cut(s) 18, 144, 214, 573, 635, 1510
BsuTUI ATCGAT 1 cut(s) 582
BtgI CCRYGG 3 cut(s) 163, 490, 1364
BtsCI GGATG 2 cut(s) 258, 1476
BtsIMutI CAGTG 1 cut(s) 528
Cac8I GCNNGC 3 cut(s) 191, 212, 392
CaiI CAGNNNCTG 1 cut(s) 118
Cfr10I RCCGGY 1 cut(s) 1159
Cfr13I GGNCC 5 cut(s) 142, 143, 213, 270, 1376
ClaI ATCGAT 1 cut(s) 582
Csp6I GTAC 2 cut(s) 607, 884
CspAI ACCGGT 1 cut(s) 1159
CviQI GTAC 2 cut(s) 607, 884
DdeI CTNAG 9 cut(s) 407, 459, 537, 613, 652, 722, 1145, 1249, 1315
DraI TTTAAA 1 cut(s) 891
EaeI YGGCCR 2 cut(s) 571, 1508
EagI CGGCCG 1 cut(s) 1508
EclXI CGGCCG 1 cut(s) 1508
Eco130I CCWWGG 1 cut(s) 1364
Eco147I AGGCCT 1 cut(s) 18
Eco24I GRGCYC 1 cut(s) 146
Eco31I GGTCTC 1 cut(s) 102
Eco47I GGWCC 2 cut(s) 270, 1376
Eco52I CGGCCG 1 cut(s) 1508
Eco57I CTGAAG 1 cut(s) 1241
Eco88I CYCGRG 2 cut(s) 243, 782
EcoO109I RGGNCCY 3 cut(s) 142, 143, 1376
EcoT14I CCWWGG 1 cut(s) 1364
EcoT38I GRGCYC 1 cut(s) 146
ErhI CCWWGG 1 cut(s) 1364
Esp3I CGTCTC 1 cut(s) 533
FalI AAGNNNNNCTT 4 cut(s) 342, 374, 620, 652
FaqI GGGAC 1 cut(s) 1389
FbaI TGATCA 1 cut(s) 816
FblI GTMKAC 1 cut(s) 793
Fnu4HI GCNGC 6 cut(s) 643, 646, 1353, 1407, 1511, 1535
FokI GGATG 2 cut(s) 245, 1463
FriOI GRGCYC 1 cut(s) 146
Fsp4HI GCNGC 6 cut(s) 643, 646, 1353, 1407, 1511, 1535
FspBI CTAG 4 cut(s) 20, 531, 548, 1019
GluI GCNGC 6 cut(s) 643, 646, 1353, 1407, 1511, 1535
GsaI CCCAGC 2 cut(s) 1205, 1472
GsuI CTGGAG 3 cut(s) 169, 701, 867
HaeIII GGCC 6 cut(s) 18, 144, 214, 573, 635, 1510
HapII CCGG 3 cut(s) 732, 1160, 1304
HincII GTYRAC 1 cut(s) 946
HindII GTYRAC 1 cut(s) 946
HindIII AAGCTT 1 cut(s) 220
HinfI GANTC 9 cut(s) 115, 135, 156, 770, 800, 1090, 1139, 1311, 1438
HpaII CCGG 3 cut(s) 732, 1160, 1304
HphI GGTGA 2 cut(s) 458, 1072
Hpy166II GTNNAC 7 cut(s) 163, 270, 609, 794, 946, 995, 1458
Hpy188I TCNGA 5 cut(s) 408, 616, 1089, 1318, 1383
Hpy188III TCNNGA 7 cut(s) 73, 243, 680, 784, 820, 902, 1094
Hpy8I GTNNAC 7 cut(s) 163, 270, 609, 794, 946, 995, 1458
Hpy99I CGWCG 2 cut(s) 572, 914
HpyAV CCTTC 9 cut(s) 50, 65, 156, 405, 496, 650, 1182, 1265, 1313
HpyCH4III ACNGT 5 cut(s) 345, 523, 860, 1009, 1504
HpyCH4V TGCA 7 cut(s) 130, 193, 348, 954, 995, 1406, 1537
HpyF10VI GCNNNNNNNGC 2 cut(s) 482, 1540
HpyF3I CTNAG 9 cut(s) 407, 459, 537, 613, 652, 722, 1145, 1249, 1315
Ksp22I TGATCA 1 cut(s) 816
LmnI GCTCC 4 cut(s) 57, 284, 520, 1306
Lsp1109I GCAGC 4 cut(s) 654, 657, 1418, 1521
LweI GCATC 1 cut(s) 534
MaeI CTAG 4 cut(s) 20, 531, 548, 1019
MaeIII GTNAC 2 cut(s) 1165, 1234
MboII GAAGA 9 cut(s) 287, 605, 673, 863, 866, 1007, 1123, 1208, 1295
MflI RGATCY 3 cut(s) 75, 180, 498
MhlI GDGCHC 2 cut(s) 146, 997
MluCI AATT 7 cut(s) 289, 596, 666, 939, 1182, 1272, 1399
MlyI GAGTC 2 cut(s) 794, 1148
MmeI TCCRAC 1 cut(s) 542
MroXI GAANNNNTTC 1 cut(s) 668
MseI TTAA 4 cut(s) 503, 750, 890, 1197
MslI CAYNNNNRTG 1 cut(s) 812
MspI CCGG 3 cut(s) 732, 1160, 1304
MspR9I CCNGG 1 cut(s) 732
Mva1269I GAATGC 1 cut(s) 1355
MvnI CGCG 1 cut(s) 798
MwoI GCNNNNNNNGC 2 cut(s) 482, 1540
NciI CCSGG 1 cut(s) 732
NcoI CCATGG 1 cut(s) 1364
NlaIV GGNNCC 3 cut(s) 144, 516, 1377
NspI RCATGY 2 cut(s) 193, 1214
NspV TTCGAA 1 cut(s) 1186
PaeI GCATGC 1 cut(s) 193
PaeR7I CTCGAG 2 cut(s) 243, 782
PceI AGGCCT 1 cut(s) 18
PciI ACATGT 1 cut(s) 1210
PcsI WCGNNNNNNNCGW 1 cut(s) 909
PctI GAATGC 1 cut(s) 1355
PdmI GAANNNNTTC 1 cut(s) 668
PfeI GAWTC 7 cut(s) 115, 135, 156, 770, 1090, 1311, 1438
PinAI ACCGGT 1 cut(s) 1159
PkrI GCNGC 6 cut(s) 644, 647, 1354, 1408, 1512, 1536
PleI GAGTC 2 cut(s) 794, 1147
PpsI GAGTC 2 cut(s) 794, 1147
PpuMI RGGWCCY 1 cut(s) 1376
PscI ACATGT 1 cut(s) 1210
Psp5II RGGWCCY 1 cut(s) 1376
PspFI CCCAGC 2 cut(s) 1201, 1468
PspN4I GGNNCC 3 cut(s) 144, 516, 1377
PspOMI GGGCCC 1 cut(s) 142
PspPI GGNCC 5 cut(s) 142, 143, 213, 270, 1376
PspPPI RGGWCCY 1 cut(s) 1376
PstI CTGCAG 1 cut(s) 132
PstNI CAGNNNCTG 1 cut(s) 118
PsuI RGATCY 3 cut(s) 75, 180, 498
RsaI GTAC 2 cut(s) 608, 885
RsaNI GTAC 2 cut(s) 607, 884
RseI CAYNNNNRTG 1 cut(s) 812
SaqAI TTAA 4 cut(s) 503, 750, 890, 1197
SatI GCNGC 6 cut(s) 643, 646, 1353, 1407, 1511, 1535
Sau96I GGNCC 5 cut(s) 142, 143, 213, 270, 1376
SchI GAGTC 2 cut(s) 794, 1148
ScrFI CCNGG 1 cut(s) 732
SduI GDGCHC 2 cut(s) 146, 997
SfaNI GCATC 1 cut(s) 534
SfcI CTRYAG 2 cut(s) 110, 128
Sfr274I CTCGAG 2 cut(s) 243, 782
SfuI TTCGAA 1 cut(s) 1186
SinI GGWCC 2 cut(s) 270, 1376
SlaI CTCGAG 2 cut(s) 243, 782
SmiMI CAYNNNNRTG 1 cut(s) 812
SmlI CTYRAG 4 cut(s) 71, 243, 312, 782
SmoI CTYRAG 4 cut(s) 71, 243, 312, 782
SphI GCATGC 1 cut(s) 193
Sse9I AATT 7 cut(s) 289, 596, 666, 939, 1182, 1272, 1399
SseBI AGGCCT 1 cut(s) 18
SsiI CCGC 2 cut(s) 1353, 1511
SspI AATATT 1 cut(s) 1071
SspMI CTAG 4 cut(s) 20, 531, 548, 1019
StuI AGGCCT 1 cut(s) 18
StyD4I CCNGG 1 cut(s) 730
StyI CCWWGG 1 cut(s) 1364
TaaI ACNGT 5 cut(s) 345, 523, 860, 1009, 1504
TaqI TCGA 9 cut(s) 106, 244, 582, 672, 768, 783, 929, 1186, 1433
TasI AATT 7 cut(s) 289, 596, 666, 939, 1182, 1272, 1399
TatI WGTACW 1 cut(s) 606
TauI GCSGC 2 cut(s) 1355, 1513
TfiI GAWTC 7 cut(s) 115, 135, 156, 770, 1090, 1311, 1438
Tru1I TTAA 4 cut(s) 503, 750, 890, 1197
Tru9I TTAA 4 cut(s) 503, 750, 890, 1197
TscAI CASTG 1 cut(s) 528
TseI GCWGC 4 cut(s) 642, 645, 1406, 1534
TspDTI ATGAA 2 cut(s) 17, 951
TspGWI ACGGA 2 cut(s) 180, 507
TspRI CASTG 1 cut(s) 528
VneI GTGCAC 1 cut(s) 993
VpaK11BI GGWCC 2 cut(s) 270, 1376
XapI RAATTY 6 cut(s) 289, 596, 666, 1182, 1272, 1399
XceI RCATGY 2 cut(s) 193, 1214
XhoI CTCGAG 2 cut(s) 243, 782
XmiI GTMKAC 1 cut(s) 793
XmnI GAANNNNTTC 1 cut(s) 668
XspI CTAG 4 cut(s) 20, 531, 548, 1019
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.