MD13G1057100.v1.1

Cytochrome P450

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Reverse (-)
4005538 .. 4005966
429 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1057100.v1.1.491

Sequence Viewer

Length: 429 bp
ATGAGTATGATCATCAATGAGGCTCTGAGGTTATATCCTCCTGTTCTTAACATTGATAGGAGAGTTAAAAGGGAAGTTAAACTGGGAAAGTATATGGTTCCTGCTAATGTTGAATTGATCATCCCATGTCTAGCACTTCACCATGAGACTGAATTCTGGGGGCAAGATGCGCAACTTTTTAAACCTAATCGATTCTCTGCAGGTGTTGCTAAGGCTACCACTGATAATATAGCCGCATTTTTACCCTTTGGAATGGGACCTCGAAGTTGTGTTGGTTTAAACTTTGCGGCCAATGAAGCAAAGATTGTTCTGTCGATGATTCTACAACGCTACCGCTTTACCCTTTCCCCGGGTTACGTCCACTCACCGTGTGATTATCTTTCAATTCGTCCACAACATGGAATTCAAGTTATTCTACACGCACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

143

Amino Acids

15.96

Weight (kDa)

9.33

Isoelectric Point (pI)

49.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 2 - 126 9.2e-34 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000078)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g15240 FvH4_3g15270 FvH4_3g15280 FvH4_3g32750 FvH4_3g32760 FvH4_3g32760 FvH4_3g32880 FvH4_4g08190 FvH4_4g29160 FvH4_4g29370 FvH4_4g29400 FvH4_4g29420 FvH4_4g29420 FvH4_4g29420 FvH4_4g29430 FvH4_4g29440 FvH4_4g29450 FvH4_4g29450 FvH4_4g29450 FvH4_4g29460 FvH4_4g29461 FvH4_4g29462 FvH4_4g29463 FvH4_4g29480 FvH4_4g29481 FvH4_4g29482 FvH4_4g29483 FvH4_4g29484 FvH4_6g26720 FvH4_6g26720
malus_domestica MD00G1065200.v1.1 MD06G1145800.v1.1 MD06G1146000.v1.1 MD06G1146700.v1.1 MD13G1031000.v1.1 MD13G1033900.v1.1 MD13G1057000.v1.1 MD13G1057100.v1.1 MD13G1057200.v1.1 MD13G1057400.v1.1 MD13G1057800.v1.1 MD13G1058000.v1.1 MD13G1058100.v1.1 MD13G1058200.v1.1 MD13G1058300.v1.1 MD13G1058500.v1.1 MD13G1058600.v1.1 MD13G1058700.v1.1 MD16G1035700.v1.1 MD16G1056400.v1.1 MD16G1056600.v1.1 MD16G1056700.v1.1 MD16G1056900.v1.1 MD16G1058100.v1.1
prunus_persica Prupe.1G291100_v2.0.a1 Prupe.1G291200_v2.0.a1 Prupe.1G291500_v2.0.a1 Prupe.1G291600_v2.0.a1 Prupe.1G291700_v2.0.a1 Prupe.1G291800_v2.0.a1 Prupe.1G291900_v2.0.a1 Prupe.1G292000_v2.0.a1 Prupe.1G292100_v2.0.a1 Prupe.1G292400_v2.0.a1 Prupe.1G292500_v2.0.a1 Prupe.1G292600_v2.0.a1 Prupe.1G292700_v2.0.a1 Prupe.1G292800_v2.0.a1 Prupe.1G296000_v2.0.a1 Prupe.1G296100_v2.0.a1 Prupe.1G296300_v2.0.a1 Prupe.1G296600_v2.0.a1 Prupe.1G296900_v2.0.a1 Prupe.1G534600_v2.0.a1 Prupe.5G046700_v2.0.a1 Prupe.8G021800_v2.0.a1 Prupe.8G026400_v2.0.a1
pyrus_communis pycom06g13510 pycom06g13530 pycom06g13540 pycom06g13570 pycom06g13590 pycom06g13620 pycom13g02710 pycom13g02930 pycom13g05100 pycom13g05110 pycom13g05140 pycom13g05160 pycom13g05170 pycom13g05190 pycom13g05200 pycom13g05210 pycom13g05220 pycom16g03060 pycom16g04940 pycom16g04960 pycom16g04990 pycom16g05000 pycom16g05080
rosa_chinensis RchiOBHm_Chr1g0337981 RchiOBHm_Chr1g0337991 RchiOBHm_Chr1g0339431 RchiOBHm_Chr4g0402401 RchiOBHm_Chr4g0420571 RchiOBHm_Chr4g0420601 RchiOBHm_Chr4g0420611 RchiOBHm_Chr4g0420621 RchiOBHm_Chr4g0420631 RchiOBHm_Chr4g0437211 RchiOBHm_Chr4g0437221 RchiOBHm_Chr4g0437251 RchiOBHm_Chr4g0437431 RchiOBHm_Chr4g0437441 RchiOBHm_Chr4g0437491 RchiOBHm_Chr4g0437501 RchiOBHm_Chr4g0437511 RchiOBHm_Chr4g0437521 RchiOBHm_Chr4g0437531 RchiOBHm_Chr4g0437541 RchiOBHm_Chr4g0437551 RchiOBHm_Chr4g0437591 RchiOBHm_Chr4g0437631 RchiOBHm_Chr4g0437641 RchiOBHm_Chr4g0437671 RchiOBHm_Chr4g0437681 RchiOBHm_Chr4g0437711 RchiOBHm_Chr4g0437731 RchiOBHm_Chr4g0437741 RchiOBHm_Chr4g0437751 RchiOBHm_Chr5g0025681 RchiOBHm_Chr5g0025711 RchiOBHm_Chr5g0025731 RchiOBHm_Chr5g0059841 RchiOBHm_Chr6g0272651
rosa_laevigata RLG00000006420 RLG00000006421 RLG00000006423 RLG00000006426 RLG00000006427 RLG00000006428 RLG00000006429 RLG00000006431 RLG00000006433 RLG00000006434 RLG00000006435 RLG00000006436 RLG00000006437 RLG00000006455 RLG00000007746 RLG00000007747 RLG00000007748 RLG00000007749 RLG00000007750 RLG00000009091 RLG00000009092 RLG00000009095 RLG00000009096 RLG00000017856 RLG00000028094 RLG00000029230 RLG00000029231 RLG00000030008 RLG00000032859 RLG00000032860 RLG00000032861 RLG00000032865 RLG00000032868 RLG00000035332
rosa_multiflora Rmu_co7986016.1_g000001 Rmu_co8226539.1_g000001 Rmu_co8349613.1_g000001 Rmu_sc0000272.1_g000014 Rmu_sc0000591.1_g000003 Rmu_sc0000613.1_g000013 Rmu_sc0001629.1_g000022 Rmu_sc0001629.1_g000025 Rmu_sc0002131.1_g000027 Rmu_sc0002137.1_g000006 Rmu_sc0002137.1_g000014 Rmu_sc0002137.1_g000019 Rmu_sc0002472.1_g000002 Rmu_sc0002472.1_g000012 Rmu_sc0002472.1_g000018 Rmu_sc0002472.1_g000034 Rmu_sc0002472.1_g000040 Rmu_sc0002472.1_g000051 Rmu_sc0002638.1_g000005 Rmu_sc0002638.1_g000010 Rmu_sc0002638.1_g000025 Rmu_sc0002638.1_g000030 Rmu_sc0002638.1_g000037 Rmu_sc0002638.1_g000042 Rmu_sc0004339.1_g000019 Rmu_sc0005580.1_g000013 Rmu_sc0006617.1_g000002 Rmu_sc0006986.1_g000003 Rmu_sc0006986.1_g000017 Rmu_sc0008352.1_g000001 Rmu_sc0008352.1_g000002 Rmu_sc0009431.1_g000011 Rmu_sc0011080.1_g000003 Rmu_sc0011080.1_g000006 Rmu_sc0016549.1_g000001 Rmu_sc0016549.1_g000002 Rmu_sc0017154.1_g000001 Rmu_sc0017155.1_g000001 Rmu_sc0028438.1_g000001 Rmu_sc0041413.1_g000001 Rmu_ssc0000330.1_g000022
rosa_roxburghii Rroxscaffold_1G00020750 Rroxscaffold_1G00053460 Rroxscaffold_1G00054250 Rroxscaffold_1G00054260 Rroxscaffold_1G00054270 Rroxscaffold_1G00054290 Rroxscaffold_2G00120210 Rroxscaffold_4G00313460 Rroxscaffold_4G00313470 Rroxscaffold_4G00330630 Rroxscaffold_5G00347070 Rroxscaffold_5G00347110 Rroxscaffold_5G00378670 Rroxscaffold_5G00378690 Rroxscaffold_5G00378720 Rroxscaffold_5G00378730 Rroxscaffold_5G00378740 Rroxscaffold_5G00378760 Rroxscaffold_5G00378780 Rroxscaffold_5G00378790 Rroxscaffold_5G00378800 Rroxscaffold_5G00378810 Rroxscaffold_5G00378820 Rroxscaffold_5G00378840 Rroxscaffold_5G00378860 Rroxscaffold_5G00378870 Rroxscaffold_7G00196060
rosa_rugosa Rorug01G0142200.1 Rorug01G0332800 Rorug02G0012200 Rorug02G0248300 Rorug03G0219000 Rorug03G0219100 Rorug03G0219200 Rorug04G0035100 Rorug04G0301500 Rorug04G0301500 Rorug04G0301700 Rorug04G0301800 Rorug04G0301800 Rorug04G0301900 Rorug04G0302000 Rorug04G0302500 Rorug04G0302600 Rorug04G0302700 Rorug04G0302800 Rorug04G0302900 Rorug04G0303000 Rorug04G0303000 Rorug04G0303100 Rorug04G0303200 Rorug04G0303300 Rorug04G0303400 Rorug04G0303500 Rorug04G0303500 Rorug05G0087800 Rorug05G0088200 Rorug05G0326300 Rorug06G0173000
rosa_samantha Rh2AG222400 Rh4DG224800 Rh4DG359900 Rh4DG360000 Rh4DG360100 Rh4DG360200 Rh4DG360300 Rh4DG360500 Rh4DG360700 Rh4DG360800 Rh4DG360900 Rh4DG361000 Rh5DG177900 Rh5DG178200 Rh5DG178400 Rh6CG187800
rosa_wichuraiana Rw1G013580 Rw4G009020 Rw4G019580 Rw4G030990 Rw4G031000 Rw4G031220 Rw4G031230 Rw4G031240 Rw4G031250 Rw4G031260 Rw4G031270 Rw4G031280 Rw4G031290 Rw4G031310 Rw4G031320 Rw4G031330 Rw4G031340 Rw4G031360 Rw4G031370 Rw5G016310 Rw5G016320 Rw5G016330 Rw5G036760 Rw6G016090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 191
Acc16I TGCGCA 1 cut(s) 171
Acc36I ACCTGC 1 cut(s) 191
AccB7I CCANNNNNTGG 1 cut(s) 398
AciI CCGC 3 cut(s) 234, 287, 334
AcoI YGGCCR 1 cut(s) 288
AcsI RAATTY 2 cut(s) 152, 402
AdeI CACNNNGTG 1 cut(s) 371
AfiI CCNNNNNNNGG 2 cut(s) 349, 398
AgsI TTSAA 3 cut(s) 113, 384, 407
Alw26I GTCTC 1 cut(s) 140
Ama87I CYCGRG 1 cut(s) 349
AoxI GGCC 1 cut(s) 288
ApoI RAATTY 2 cut(s) 152, 402
AspLEI GCGC 1 cut(s) 172
AspS9I GGNCC 1 cut(s) 257
AsuC2I CCSGG 2 cut(s) 350, 351
AsuHPI GGTGA 2 cut(s) 131, 357
AvaI CYCGRG 1 cut(s) 349
AvaII GGWCC 1 cut(s) 257
BclI TGATCA 2 cut(s) 9, 117
BcnI CCSGG 2 cut(s) 350, 351
BcoDI GTCTC 1 cut(s) 140
BfaI CTAG 1 cut(s) 131
BfmI CTRYAG 1 cut(s) 198
BfuAI ACCTGC 1 cut(s) 191
BisI GCNGC 2 cut(s) 234, 288
BlsI GCNGC 2 cut(s) 235, 289
Bme1390I CCNGG 2 cut(s) 350, 351
Bme18I GGWCC 1 cut(s) 257
BmeT110I CYCGRG 1 cut(s) 349
BmgT120I GGNCC 1 cut(s) 257
BmiI GGNNCC 2 cut(s) 99, 258
BmrFI CCNGG 2 cut(s) 350, 351
BmrI ACTGGG 1 cut(s) 92
BmsI GCATC 1 cut(s) 157
BmuI ACTGGG 1 cut(s) 92
Bpu10I CCTNAGC 1 cut(s) 210
BpuMI CCSGG 2 cut(s) 350, 351
Bsa29I ATCGAT 1 cut(s) 190
BsaJI CCNNGG 2 cut(s) 348, 349
Bsc4I CCNNNNNNNGG 2 cut(s) 349, 398
Bse1I ACTGG 1 cut(s) 87
BseCI ATCGAT 1 cut(s) 190
BseDI CCNNGG 2 cut(s) 348, 349
BseGI GGATG 1 cut(s) 120
BseLI CCNNNNNNNGG 2 cut(s) 349, 398
BseMII CTCAG 1 cut(s) 17
BseNI ACTGG 1 cut(s) 87
BshFI GGCC 1 cut(s) 290
BshVI ATCGAT 1 cut(s) 190
BsiHKCI CYCGRG 1 cut(s) 349
BsiSI CCGG 1 cut(s) 350
BslFI GGGAC 1 cut(s) 270
BslI CCNNNNNNNGG 2 cut(s) 349, 398
BsmAI GTCTC 1 cut(s) 140
BsmFI GGGAC 1 cut(s) 270
BsnI GGCC 1 cut(s) 290
BsoBI CYCGRG 1 cut(s) 349
Bsp143I GATC 2 cut(s) 9, 117
BspACI CCGC 3 cut(s) 234, 287, 334
BspANI GGCC 1 cut(s) 290
BspCNI CTCAG 1 cut(s) 18
BspDI ATCGAT 1 cut(s) 190
BspLI GGNNCC 2 cut(s) 99, 258
BspMAI CTGCAG 1 cut(s) 202
BspMI ACCTGC 1 cut(s) 191
BsrI ACTGG 1 cut(s) 87
BssECI CCNNGG 2 cut(s) 348, 349
BssMI GATC 2 cut(s) 9, 117
Bst4CI ACNGT 2 cut(s) 369, 426
BstAPI GCANNNNNTGC 1 cut(s) 206
BstDEI CTNAG 2 cut(s) 26, 210
BstF5I GGATG 1 cut(s) 120
BstHHI GCGC 1 cut(s) 172
BstKTI GATC 2 cut(s) 12, 120
BstMAI GTCTC 1 cut(s) 140
BstMBI GATC 2 cut(s) 9, 117
BstMWI GCNNNNNNNGC 3 cut(s) 169, 206, 296
BstSCI CCNGG 2 cut(s) 348, 349
BstSFI CTRYAG 1 cut(s) 198
Bsu15I ATCGAT 1 cut(s) 190
BsuRI GGCC 1 cut(s) 290
BsuTUI ATCGAT 1 cut(s) 190
BtsCI GGATG 1 cut(s) 120
BtsIMutI CAGTG 2 cut(s) 219, 422
BveI ACCTGC 1 cut(s) 191
CfoI GCGC 1 cut(s) 172
Cfr13I GGNCC 1 cut(s) 257
Cfr9I CCCGGG 1 cut(s) 349
ClaI ATCGAT 1 cut(s) 190
CviAII CATG 3 cut(s) 126, 143, 398
CviJI RGCY 4 cut(s) 23, 215, 233, 290
CviKI_1 RGCY 4 cut(s) 23, 215, 233, 290
DdeI CTNAG 2 cut(s) 26, 210
DpnI GATC 2 cut(s) 11, 119
DpnII GATC 2 cut(s) 9, 117
DraI TTTAAA 2 cut(s) 181, 279
DraIII CACNNNGTG 1 cut(s) 371
EaeI YGGCCR 1 cut(s) 288
Eco47I GGWCC 1 cut(s) 257
Eco88I CYCGRG 1 cut(s) 349
EcoO109I RGGNCCY 1 cut(s) 257
EcoRI GAATTC 2 cut(s) 152, 402
FaeI CATG 3 cut(s) 129, 146, 401
FaiI YATR 8 cut(s) 8, 34, 93, 95, 127, 144, 230, 399
FaqI GGGAC 1 cut(s) 270
FatI CATG 3 cut(s) 125, 142, 397
FbaI TGATCA 2 cut(s) 9, 117
Fnu4HI GCNGC 2 cut(s) 234, 288
FokI GGATG 1 cut(s) 107
Fsp4HI GCNGC 2 cut(s) 234, 288
FspBI CTAG 1 cut(s) 131
FspI TGCGCA 1 cut(s) 171
GlaI GCGC 1 cut(s) 171
GluI GCNGC 2 cut(s) 234, 288
HaeIII GGCC 1 cut(s) 290
HapII CCGG 1 cut(s) 350
HhaI GCGC 1 cut(s) 172
Hin1II CATG 3 cut(s) 129, 146, 401
Hin6I GCGC 1 cut(s) 170
HinP1I GCGC 1 cut(s) 170
HinfI GANTC 2 cut(s) 192, 319
HpaII CCGG 1 cut(s) 350
HphI GGTGA 2 cut(s) 131, 357
Hpy166II GTNNAC 2 cut(s) 361, 392
Hpy188I TCNGA 1 cut(s) 27
Hpy8I GTNNAC 2 cut(s) 361, 392
HpyCH4III ACNGT 2 cut(s) 369, 426
HpyCH4IV ACGT 1 cut(s) 357
HpyCH4V TGCA 1 cut(s) 200
HpyF10VI GCNNNNNNNGC 3 cut(s) 169, 206, 296
HpyF3I CTNAG 2 cut(s) 26, 210
HpySE526I ACGT 1 cut(s) 357
Hsp92II CATG 3 cut(s) 129, 146, 401
HspAI GCGC 1 cut(s) 170
Ksp22I TGATCA 2 cut(s) 9, 117
Kzo9I GATC 2 cut(s) 9, 117
LpnPI CCDG 6 cut(s) 54, 68, 114, 142, 186, 363
LweI GCATC 1 cut(s) 157
MaeI CTAG 1 cut(s) 131
MaeII ACGT 1 cut(s) 357
MaeIII GTNAC 1 cut(s) 353
MalI GATC 2 cut(s) 11, 119
MboI GATC 2 cut(s) 9, 117
MluCI AATT 4 cut(s) 113, 152, 384, 402
MnlI CCTC 4 cut(s) 13, 21, 48, 270
MseI TTAA 5 cut(s) 48, 66, 78, 180, 278
MspI CCGG 1 cut(s) 350
MspR9I CCNGG 2 cut(s) 350, 351
MssI GTTTAAAC 1 cut(s) 279
MwoI GCNNNNNNNGC 3 cut(s) 169, 206, 296
NciI CCSGG 2 cut(s) 350, 351
NdeII GATC 2 cut(s) 9, 117
NlaIII CATG 3 cut(s) 129, 146, 401
NlaIV GGNNCC 2 cut(s) 99, 258
NsbI TGCGCA 1 cut(s) 171
PaqCI CACCTGC 1 cut(s) 191
PfeI GAWTC 2 cut(s) 192, 319
PflMI CCANNNNNTGG 1 cut(s) 398
PkrI GCNGC 2 cut(s) 235, 289
PmeI GTTTAAAC 1 cut(s) 279
PpuMI RGGWCCY 1 cut(s) 257
Psp5II RGGWCCY 1 cut(s) 257
PspN4I GGNNCC 2 cut(s) 99, 258
PspPI GGNCC 1 cut(s) 257
PspPPI RGGWCCY 1 cut(s) 257
PstI CTGCAG 1 cut(s) 202
SaqAI TTAA 5 cut(s) 48, 66, 78, 180, 278
SatI GCNGC 2 cut(s) 234, 288
Sau3AI GATC 2 cut(s) 9, 117
Sau96I GGNCC 1 cut(s) 257
ScrFI CCNGG 2 cut(s) 350, 351
SetI ASST 5 cut(s) 32, 187, 205, 262, 360
SfaNI GCATC 1 cut(s) 157
SfcI CTRYAG 1 cut(s) 198
SinI GGWCC 1 cut(s) 257
SmaI CCCGGG 1 cut(s) 351
Sse9I AATT 4 cut(s) 113, 152, 384, 402
SsiI CCGC 3 cut(s) 234, 287, 334
SspMI CTAG 1 cut(s) 131
StyD4I CCNGG 2 cut(s) 348, 349
TaaI ACNGT 2 cut(s) 369, 426
TaiI ACGT 1 cut(s) 360
TaqI TCGA 3 cut(s) 190, 262, 314
TasI AATT 4 cut(s) 113, 152, 384, 402
TauI GCSGC 2 cut(s) 236, 290
TfiI GAWTC 2 cut(s) 192, 319
Tru1I TTAA 5 cut(s) 48, 66, 78, 180, 278
Tru9I TTAA 5 cut(s) 48, 66, 78, 180, 278
TscAI CASTG 2 cut(s) 226, 429
TspDTI ATGAA 1 cut(s) 309
TspMI CCCGGG 1 cut(s) 349
TspRI CASTG 2 cut(s) 226, 429
Van91I CCANNNNNTGG 1 cut(s) 398
VpaK11BI GGWCC 1 cut(s) 257
XapI RAATTY 2 cut(s) 152, 402
XmaI CCCGGG 1 cut(s) 349
XspI CTAG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.