RLG00000028094

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
18618284 .. 18620740
2457 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028094

Sequence Viewer

Length: 360 bp
ATGGCTGGTAATGAGATTGAAGAGTGGGTACCGAGAACGGAAGAAGGAGGTGATGAAATCCCCAATTACGGTGGGTTTCGGTTTAGCTGGGCTAAGGGTACCAAAAAGCCTCCTCTGACAAAGAATGAGCTCAGGGACAAAGTTATACAGAAAGCAGAAAAGATGAAGAATAAGAGGGATGCACATAAGGCAGCAGCTTTTGCTGCTGCAAAAACAACCACTGCTAAAGCAACAACAAAGTTGAGCACTGCTTCAACCACTACACAAGCTGCTAGAGCAAACAGTAAAGCTTCTACCTCTGCAAAGTCTTCAACACCAACAAGATCATCACAGAGGATTAGAGCTGGAAAGGAGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

12.84

Weight (kDa)

10.25

Isoelectric Point (pI)

38.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000078)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g15240 FvH4_3g15270 FvH4_3g15280 FvH4_3g32750 FvH4_3g32760 FvH4_3g32760 FvH4_3g32880 FvH4_4g08190 FvH4_4g29160 FvH4_4g29370 FvH4_4g29400 FvH4_4g29420 FvH4_4g29420 FvH4_4g29420 FvH4_4g29430 FvH4_4g29440 FvH4_4g29450 FvH4_4g29450 FvH4_4g29450 FvH4_4g29460 FvH4_4g29461 FvH4_4g29462 FvH4_4g29463 FvH4_4g29480 FvH4_4g29481 FvH4_4g29482 FvH4_4g29483 FvH4_4g29484 FvH4_6g26720 FvH4_6g26720
malus_domestica MD00G1065200.v1.1 MD06G1145800.v1.1 MD06G1146000.v1.1 MD06G1146700.v1.1 MD13G1031000.v1.1 MD13G1033900.v1.1 MD13G1057000.v1.1 MD13G1057100.v1.1 MD13G1057200.v1.1 MD13G1057400.v1.1 MD13G1057800.v1.1 MD13G1058000.v1.1 MD13G1058100.v1.1 MD13G1058200.v1.1 MD13G1058300.v1.1 MD13G1058500.v1.1 MD13G1058600.v1.1 MD13G1058700.v1.1 MD16G1035700.v1.1 MD16G1056400.v1.1 MD16G1056600.v1.1 MD16G1056700.v1.1 MD16G1056900.v1.1 MD16G1058100.v1.1
prunus_persica Prupe.1G291100_v2.0.a1 Prupe.1G291200_v2.0.a1 Prupe.1G291500_v2.0.a1 Prupe.1G291600_v2.0.a1 Prupe.1G291700_v2.0.a1 Prupe.1G291800_v2.0.a1 Prupe.1G291900_v2.0.a1 Prupe.1G292000_v2.0.a1 Prupe.1G292100_v2.0.a1 Prupe.1G292400_v2.0.a1 Prupe.1G292500_v2.0.a1 Prupe.1G292600_v2.0.a1 Prupe.1G292700_v2.0.a1 Prupe.1G292800_v2.0.a1 Prupe.1G296000_v2.0.a1 Prupe.1G296100_v2.0.a1 Prupe.1G296300_v2.0.a1 Prupe.1G296600_v2.0.a1 Prupe.1G296900_v2.0.a1 Prupe.1G534600_v2.0.a1 Prupe.5G046700_v2.0.a1 Prupe.8G021800_v2.0.a1 Prupe.8G026400_v2.0.a1
pyrus_communis pycom06g13510 pycom06g13530 pycom06g13540 pycom06g13570 pycom06g13590 pycom06g13620 pycom13g02710 pycom13g02930 pycom13g05100 pycom13g05110 pycom13g05140 pycom13g05160 pycom13g05170 pycom13g05190 pycom13g05200 pycom13g05210 pycom13g05220 pycom16g03060 pycom16g04940 pycom16g04960 pycom16g04990 pycom16g05000 pycom16g05080
rosa_chinensis RchiOBHm_Chr1g0337981 RchiOBHm_Chr1g0337991 RchiOBHm_Chr1g0339431 RchiOBHm_Chr4g0402401 RchiOBHm_Chr4g0420571 RchiOBHm_Chr4g0420601 RchiOBHm_Chr4g0420611 RchiOBHm_Chr4g0420621 RchiOBHm_Chr4g0420631 RchiOBHm_Chr4g0437211 RchiOBHm_Chr4g0437221 RchiOBHm_Chr4g0437251 RchiOBHm_Chr4g0437431 RchiOBHm_Chr4g0437441 RchiOBHm_Chr4g0437491 RchiOBHm_Chr4g0437501 RchiOBHm_Chr4g0437511 RchiOBHm_Chr4g0437521 RchiOBHm_Chr4g0437531 RchiOBHm_Chr4g0437541 RchiOBHm_Chr4g0437551 RchiOBHm_Chr4g0437591 RchiOBHm_Chr4g0437631 RchiOBHm_Chr4g0437641 RchiOBHm_Chr4g0437671 RchiOBHm_Chr4g0437681 RchiOBHm_Chr4g0437711 RchiOBHm_Chr4g0437731 RchiOBHm_Chr4g0437741 RchiOBHm_Chr4g0437751 RchiOBHm_Chr5g0025681 RchiOBHm_Chr5g0025711 RchiOBHm_Chr5g0025731 RchiOBHm_Chr5g0059841 RchiOBHm_Chr6g0272651
rosa_laevigata RLG00000006420 RLG00000006421 RLG00000006423 RLG00000006426 RLG00000006427 RLG00000006428 RLG00000006429 RLG00000006431 RLG00000006433 RLG00000006434 RLG00000006435 RLG00000006436 RLG00000006437 RLG00000006455 RLG00000007746 RLG00000007747 RLG00000007748 RLG00000007749 RLG00000007750 RLG00000009091 RLG00000009092 RLG00000009095 RLG00000009096 RLG00000017856 RLG00000028094 RLG00000029230 RLG00000029231 RLG00000030008 RLG00000032859 RLG00000032860 RLG00000032861 RLG00000032865 RLG00000032868 RLG00000035332
rosa_multiflora Rmu_co7986016.1_g000001 Rmu_co8226539.1_g000001 Rmu_co8349613.1_g000001 Rmu_sc0000272.1_g000014 Rmu_sc0000591.1_g000003 Rmu_sc0000613.1_g000013 Rmu_sc0001629.1_g000022 Rmu_sc0001629.1_g000025 Rmu_sc0002131.1_g000027 Rmu_sc0002137.1_g000006 Rmu_sc0002137.1_g000014 Rmu_sc0002137.1_g000019 Rmu_sc0002472.1_g000002 Rmu_sc0002472.1_g000012 Rmu_sc0002472.1_g000018 Rmu_sc0002472.1_g000034 Rmu_sc0002472.1_g000040 Rmu_sc0002472.1_g000051 Rmu_sc0002638.1_g000005 Rmu_sc0002638.1_g000010 Rmu_sc0002638.1_g000025 Rmu_sc0002638.1_g000030 Rmu_sc0002638.1_g000037 Rmu_sc0002638.1_g000042 Rmu_sc0004339.1_g000019 Rmu_sc0005580.1_g000013 Rmu_sc0006617.1_g000002 Rmu_sc0006986.1_g000003 Rmu_sc0006986.1_g000017 Rmu_sc0008352.1_g000001 Rmu_sc0008352.1_g000002 Rmu_sc0009431.1_g000011 Rmu_sc0011080.1_g000003 Rmu_sc0011080.1_g000006 Rmu_sc0016549.1_g000001 Rmu_sc0016549.1_g000002 Rmu_sc0017154.1_g000001 Rmu_sc0017155.1_g000001 Rmu_sc0028438.1_g000001 Rmu_sc0041413.1_g000001 Rmu_ssc0000330.1_g000022
rosa_roxburghii Rroxscaffold_1G00020750 Rroxscaffold_1G00053460 Rroxscaffold_1G00054250 Rroxscaffold_1G00054260 Rroxscaffold_1G00054270 Rroxscaffold_1G00054290 Rroxscaffold_2G00120210 Rroxscaffold_4G00313460 Rroxscaffold_4G00313470 Rroxscaffold_4G00330630 Rroxscaffold_5G00347070 Rroxscaffold_5G00347110 Rroxscaffold_5G00378670 Rroxscaffold_5G00378690 Rroxscaffold_5G00378720 Rroxscaffold_5G00378730 Rroxscaffold_5G00378740 Rroxscaffold_5G00378760 Rroxscaffold_5G00378780 Rroxscaffold_5G00378790 Rroxscaffold_5G00378800 Rroxscaffold_5G00378810 Rroxscaffold_5G00378820 Rroxscaffold_5G00378840 Rroxscaffold_5G00378860 Rroxscaffold_5G00378870 Rroxscaffold_7G00196060
rosa_rugosa Rorug01G0142200.1 Rorug01G0332800 Rorug02G0012200 Rorug02G0248300 Rorug03G0219000 Rorug03G0219100 Rorug03G0219200 Rorug04G0035100 Rorug04G0301500 Rorug04G0301500 Rorug04G0301700 Rorug04G0301800 Rorug04G0301800 Rorug04G0301900 Rorug04G0302000 Rorug04G0302500 Rorug04G0302600 Rorug04G0302700 Rorug04G0302800 Rorug04G0302900 Rorug04G0303000 Rorug04G0303000 Rorug04G0303100 Rorug04G0303200 Rorug04G0303300 Rorug04G0303400 Rorug04G0303500 Rorug04G0303500 Rorug05G0087800 Rorug05G0088200 Rorug05G0326300 Rorug06G0173000
rosa_samantha Rh2AG222400 Rh4DG224800 Rh4DG359900 Rh4DG360000 Rh4DG360100 Rh4DG360200 Rh4DG360300 Rh4DG360500 Rh4DG360700 Rh4DG360800 Rh4DG360900 Rh4DG361000 Rh5DG177900 Rh5DG178200 Rh5DG178400 Rh6CG187800
rosa_wichuraiana Rw1G013580 Rw4G009020 Rw4G019580 Rw4G030990 Rw4G031000 Rw4G031220 Rw4G031230 Rw4G031240 Rw4G031250 Rw4G031260 Rw4G031270 Rw4G031280 Rw4G031290 Rw4G031310 Rw4G031320 Rw4G031330 Rw4G031340 Rw4G031360 Rw4G031370 Rw5G016310 Rw5G016320 Rw5G016330 Rw5G036760 Rw6G016090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 28, 98
AccB1I GGYRCC 2 cut(s) 28, 98
AfaI GTAC 2 cut(s) 30, 100
AfiI CCNNNNNNNGG 1 cut(s) 68
AgsI TTSAA 3 cut(s) 20, 255, 312
AluBI AGCT 6 cut(s) 87, 130, 197, 269, 290, 344
AluI AGCT 6 cut(s) 87, 130, 197, 269, 290, 344
Alw21I GWGCWC 2 cut(s) 132, 248
ApeKI GCWGC 5 cut(s) 191, 194, 203, 206, 269
Asp718I GGTACC 2 cut(s) 28, 98
AsuHPI GGTGA 1 cut(s) 62
BanI GGYRCC 2 cut(s) 28, 98
BanII GRGCYC 1 cut(s) 132
BarI GAAGNNNNNNTAC 2 cut(s) 12, 44
BbsI GAAGAC 1 cut(s) 300
Bbv12I GWGCWC 2 cut(s) 132, 248
BbvI GCAGC 5 cut(s) 190, 193, 203, 206, 256
BfaI CTAG 1 cut(s) 273
BisI GCNGC 5 cut(s) 192, 195, 204, 207, 270
BlsI GCNGC 5 cut(s) 193, 196, 205, 208, 271
BmiI GGNNCC 2 cut(s) 30, 100
BmsI GCATC 1 cut(s) 169
BpiI GAAGAC 1 cut(s) 300
Bpu10I CCTNAGC 2 cut(s) 93, 131
Bsc4I CCNNNNNNNGG 1 cut(s) 68
BseGI GGATG 1 cut(s) 184
BseLI CCNNNNNNNGG 1 cut(s) 68
BseMII CTCAG 1 cut(s) 145
BseRI GAGGAG 1 cut(s) 102
BseXI GCAGC 5 cut(s) 190, 193, 203, 206, 256
BseYI CCCAGC 1 cut(s) 87
BshNI GGYRCC 2 cut(s) 28, 98
BsiHKAI GWGCWC 2 cut(s) 132, 248
BslFI GGGAC 1 cut(s) 149
BslI CCNNNNNNNGG 1 cut(s) 68
BsmFI GGGAC 1 cut(s) 149
Bsp1286I GDGCHC 2 cut(s) 132, 248
Bsp143I GATC 1 cut(s) 323
BspCNI CTCAG 1 cut(s) 144
BspLI GGNNCC 2 cut(s) 30, 100
BspT107I GGYRCC 2 cut(s) 28, 98
BssMI GATC 1 cut(s) 323
Bst4CI ACNGT 2 cut(s) 71, 284
Bst6I CTCTTC 1 cut(s) 15
BstAPI GCANNNNNTGC 1 cut(s) 200
BstDEI CTNAG 2 cut(s) 93, 131
BstF5I GGATG 1 cut(s) 184
BstKTI GATC 1 cut(s) 326
BstMBI GATC 1 cut(s) 323
BstMWI GCNNNNNNNGC 4 cut(s) 188, 200, 203, 275
BstV1I GCAGC 5 cut(s) 190, 193, 203, 206, 256
BstV2I GAAGAC 1 cut(s) 300
BtsCI GGATG 1 cut(s) 184
BtsI GCAGTG 2 cut(s) 219, 246
BtsIMutI CAGTG 2 cut(s) 219, 246
Csp6I GTAC 2 cut(s) 29, 99
CspCI CAANNNNNGTGG 2 cut(s) 52, 87
CviAII CATG 1 cut(s) 357
CviJI RGCY 9 cut(s) 5, 87, 92, 109, 130, 197, 269, 290, 344
CviKI_1 RGCY 9 cut(s) 5, 87, 92, 109, 130, 197, 269, 290, 344
CviQI GTAC 2 cut(s) 29, 99
DdeI CTNAG 2 cut(s) 93, 131
DpnI GATC 1 cut(s) 325
DpnII GATC 1 cut(s) 323
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
Ecl136II GAGCTC 1 cut(s) 130
Eco24I GRGCYC 1 cut(s) 132
Eco53kI GAGCTC 1 cut(s) 130
EcoICRI GAGCTC 1 cut(s) 130
EcoT38I GRGCYC 1 cut(s) 132
FaeI CATG 1 cut(s) 360
FaiI YATR 3 cut(s) 146, 186, 358
FaqI GGGAC 1 cut(s) 149
FatI CATG 1 cut(s) 356
Fnu4HI GCNGC 5 cut(s) 192, 195, 204, 207, 270
FokI GGATG 1 cut(s) 191
FriOI GRGCYC 1 cut(s) 132
Fsp4HI GCNGC 5 cut(s) 192, 195, 204, 207, 270
FspBI CTAG 1 cut(s) 273
GluI GCNGC 5 cut(s) 192, 195, 204, 207, 270
GsaI CCCAGC 1 cut(s) 91
Hin1II CATG 1 cut(s) 360
HindIII AAGCTT 1 cut(s) 288
HphI GGTGA 1 cut(s) 62
Hpy188I TCNGA 1 cut(s) 117
HpyAV CCTTC 1 cut(s) 38
HpyCH4III ACNGT 2 cut(s) 71, 284
HpyCH4V TGCA 3 cut(s) 182, 209, 302
HpyF10VI GCNNNNNNNGC 4 cut(s) 188, 200, 203, 275
HpyF3I CTNAG 2 cut(s) 93, 131
Hsp92II CATG 1 cut(s) 360
KpnI GGTACC 2 cut(s) 32, 102
Kzo9I GATC 1 cut(s) 323
LpnPI CCDG 3 cut(s) 73, 118, 330
Lsp1109I GCAGC 5 cut(s) 190, 193, 203, 206, 256
LweI GCATC 1 cut(s) 169
MaeI CTAG 1 cut(s) 273
MalI GATC 1 cut(s) 325
MboI GATC 1 cut(s) 323
MboII GAAGA 4 cut(s) 32, 53, 178, 300
MhlI GDGCHC 2 cut(s) 132, 248
MluCI AATT 1 cut(s) 64
MnlI CCTC 7 cut(s) 41, 120, 123, 168, 307, 327, 346
MwoI GCNNNNNNNGC 4 cut(s) 188, 200, 203, 275
NdeII GATC 1 cut(s) 323
NlaIII CATG 1 cut(s) 360
NlaIV GGNNCC 2 cut(s) 30, 100
PkrI GCNGC 5 cut(s) 193, 196, 205, 208, 271
Psp124BI GAGCTC 1 cut(s) 132
PspFI CCCAGC 1 cut(s) 87
PspN4I GGNNCC 2 cut(s) 30, 100
RsaI GTAC 2 cut(s) 30, 100
RsaNI GTAC 2 cut(s) 29, 99
SacI GAGCTC 1 cut(s) 132
SatI GCNGC 5 cut(s) 192, 195, 204, 207, 270
Sau3AI GATC 1 cut(s) 323
SduI GDGCHC 2 cut(s) 132, 248
SetI ASST 8 cut(s) 52, 89, 132, 199, 271, 292, 299, 346
SfaNI GCATC 1 cut(s) 169
SgeI CNNG 7 cut(s) 18, 45, 100, 145, 278, 285, 333
Sse9I AATT 1 cut(s) 64
SspMI CTAG 1 cut(s) 273
SstI GAGCTC 1 cut(s) 132
TaaI ACNGT 2 cut(s) 71, 284
TasI AATT 1 cut(s) 64
TscAI CASTG 2 cut(s) 226, 253
TseI GCWGC 5 cut(s) 191, 194, 203, 206, 269
TspDTI ATGAA 2 cut(s) 69, 179
TspGWI ACGGA 1 cut(s) 53
TspRI CASTG 2 cut(s) 226, 253
XspI CTAG 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.