Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002638.1

Orthogroup ID

OG0000078

Physical Location & Seq

Genomic Coordinates Reverse (-)

18105 .. 19216

Gene Structure 1112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002638.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

atgatcctcaatgagtgtctaaagttatatcttccaatcatatcccttgtaagaaaggttgagaaagaggttagactgggaaagctcataattcttgctaatgttgaattgcacataccaagtctagcactgcaccatgaaccagagtttttgggacaagaagtggaactattcaaaccagagagatttgctgaagaggttgttaaagctactaacaacaacataggcacattcttaccctttggaacaggacctcggaattgtgtaggcttcgactatgcgaccactgaagcaaagattgctctgtcaatgattctacaatgctacaccttcacactctccctggattatgttcactcgcccttccattatgtcatacttcgcccacaacatggagttcaagttgatctttcatcaaatcttctgtcagatttgcccaagacgtttattacagagctcagtaataatgggctgaaatctctcccttcgccattcaaaatgtggctaatgctcacaagactttatttgcacaacacagaaataaccatggatatccttcgtcagattgagggatgggaaaactttgatgaacgccgtcgcttgaagcaacagaagaagctggattttcgcgttgttggctctgctgcatttgatgaaggtgctgataaaagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0008395 GO:0009719 GO:0009725 GO:0009741 GO:0010033 GO:0010268 GO:0010817 GO:0014070 GO:0016128 GO:0016131 GO:0016491 GO:0033993 GO:0042221 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00905 map00905

Pfam Domains

Protein Families

p450

Protein Analysis

224

Amino Acids

25.69

Weight (kDa)

6.39

Isoelectric Point (pI)

52.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000078)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15240 FvH4_3g15270 FvH4_3g15280 FvH4_3g32750 FvH4_3g32760 FvH4_3g32760 FvH4_3g32880 FvH4_4g08190 FvH4_4g29160 FvH4_4g29370 FvH4_4g29400 FvH4_4g29420 FvH4_4g29420 FvH4_4g29420 FvH4_4g29430 FvH4_4g29440 FvH4_4g29450 FvH4_4g29450 FvH4_4g29450 FvH4_4g29460 FvH4_4g29461 FvH4_4g29462 FvH4_4g29463 FvH4_4g29480 FvH4_4g29481 FvH4_4g29482 FvH4_4g29483 FvH4_4g29484 FvH4_6g26720 FvH4_6g26720
malus_domestica	MD00G1065200.v1.1 MD06G1145800.v1.1 MD06G1146000.v1.1 MD06G1146700.v1.1 MD13G1031000.v1.1 MD13G1033900.v1.1 MD13G1057000.v1.1 MD13G1057100.v1.1 MD13G1057200.v1.1 MD13G1057400.v1.1 MD13G1057800.v1.1 MD13G1058000.v1.1 MD13G1058100.v1.1 MD13G1058200.v1.1 MD13G1058300.v1.1 MD13G1058500.v1.1 MD13G1058600.v1.1 MD13G1058700.v1.1 MD16G1035700.v1.1 MD16G1056400.v1.1 MD16G1056600.v1.1 MD16G1056700.v1.1 MD16G1056900.v1.1 MD16G1058100.v1.1
prunus_persica	Prupe.1G291100_v2.0.a1 Prupe.1G291200_v2.0.a1 Prupe.1G291500_v2.0.a1 Prupe.1G291600_v2.0.a1 Prupe.1G291700_v2.0.a1 Prupe.1G291800_v2.0.a1 Prupe.1G291900_v2.0.a1 Prupe.1G292000_v2.0.a1 Prupe.1G292100_v2.0.a1 Prupe.1G292400_v2.0.a1 Prupe.1G292500_v2.0.a1 Prupe.1G292600_v2.0.a1 Prupe.1G292700_v2.0.a1 Prupe.1G292800_v2.0.a1 Prupe.1G296000_v2.0.a1 Prupe.1G296100_v2.0.a1 Prupe.1G296300_v2.0.a1 Prupe.1G296600_v2.0.a1 Prupe.1G296900_v2.0.a1 Prupe.1G534600_v2.0.a1 Prupe.5G046700_v2.0.a1 Prupe.8G021800_v2.0.a1 Prupe.8G026400_v2.0.a1
pyrus_communis	pycom06g13510 pycom06g13530 pycom06g13540 pycom06g13570 pycom06g13590 pycom06g13620 pycom13g02710 pycom13g02930 pycom13g05100 pycom13g05110 pycom13g05140 pycom13g05160 pycom13g05170 pycom13g05190 pycom13g05200 pycom13g05210 pycom13g05220 pycom16g03060 pycom16g04940 pycom16g04960 pycom16g04990 pycom16g05000 pycom16g05080
rosa_chinensis	RchiOBHm_Chr1g0337981 RchiOBHm_Chr1g0337991 RchiOBHm_Chr1g0339431 RchiOBHm_Chr4g0402401 RchiOBHm_Chr4g0420571 RchiOBHm_Chr4g0420601 RchiOBHm_Chr4g0420611 RchiOBHm_Chr4g0420621 RchiOBHm_Chr4g0420631 RchiOBHm_Chr4g0437211 RchiOBHm_Chr4g0437221 RchiOBHm_Chr4g0437251 RchiOBHm_Chr4g0437431 RchiOBHm_Chr4g0437441 RchiOBHm_Chr4g0437491 RchiOBHm_Chr4g0437501 RchiOBHm_Chr4g0437511 RchiOBHm_Chr4g0437521 RchiOBHm_Chr4g0437531 RchiOBHm_Chr4g0437541 RchiOBHm_Chr4g0437551 RchiOBHm_Chr4g0437591 RchiOBHm_Chr4g0437631 RchiOBHm_Chr4g0437641 RchiOBHm_Chr4g0437671 RchiOBHm_Chr4g0437681 RchiOBHm_Chr4g0437711 RchiOBHm_Chr4g0437731 RchiOBHm_Chr4g0437741 RchiOBHm_Chr4g0437751 RchiOBHm_Chr5g0025681 RchiOBHm_Chr5g0025711 RchiOBHm_Chr5g0025731 RchiOBHm_Chr5g0059841 RchiOBHm_Chr6g0272651
rosa_laevigata	RLG00000006420 RLG00000006421 RLG00000006423 RLG00000006426 RLG00000006427 RLG00000006428 RLG00000006429 RLG00000006431 RLG00000006433 RLG00000006434 RLG00000006435 RLG00000006436 RLG00000006437 RLG00000006455 RLG00000007746 RLG00000007747 RLG00000007748 RLG00000007749 RLG00000007750 RLG00000009091 RLG00000009092 RLG00000009095 RLG00000009096 RLG00000017856 RLG00000028094 RLG00000029230 RLG00000029231 RLG00000030008 RLG00000032859 RLG00000032860 RLG00000032861 RLG00000032865 RLG00000032868 RLG00000035332
rosa_multiflora	Rmu_co7986016.1_g000001 Rmu_co8226539.1_g000001 Rmu_co8349613.1_g000001 Rmu_sc0000272.1_g000014 Rmu_sc0000591.1_g000003 Rmu_sc0000613.1_g000013 Rmu_sc0001629.1_g000022 Rmu_sc0001629.1_g000025 Rmu_sc0002131.1_g000027 Rmu_sc0002137.1_g000006 Rmu_sc0002137.1_g000014 Rmu_sc0002137.1_g000019 Rmu_sc0002472.1_g000002 Rmu_sc0002472.1_g000012 Rmu_sc0002472.1_g000018 Rmu_sc0002472.1_g000034 Rmu_sc0002472.1_g000040 Rmu_sc0002472.1_g000051 Rmu_sc0002638.1_g000005 Rmu_sc0002638.1_g000010 Rmu_sc0002638.1_g000025 Rmu_sc0002638.1_g000030 Rmu_sc0002638.1_g000037 Rmu_sc0002638.1_g000042 Rmu_sc0004339.1_g000019 Rmu_sc0005580.1_g000013 Rmu_sc0006617.1_g000002 Rmu_sc0006986.1_g000003 Rmu_sc0006986.1_g000017 Rmu_sc0008352.1_g000001 Rmu_sc0008352.1_g000002 Rmu_sc0009431.1_g000011 Rmu_sc0011080.1_g000003 Rmu_sc0011080.1_g000006 Rmu_sc0016549.1_g000001 Rmu_sc0016549.1_g000002 Rmu_sc0017154.1_g000001 Rmu_sc0017155.1_g000001 Rmu_sc0028438.1_g000001 Rmu_sc0041413.1_g000001 Rmu_ssc0000330.1_g000022
rosa_roxburghii	Rroxscaffold_1G00020750 Rroxscaffold_1G00053460 Rroxscaffold_1G00054250 Rroxscaffold_1G00054260 Rroxscaffold_1G00054270 Rroxscaffold_1G00054290 Rroxscaffold_2G00120210 Rroxscaffold_4G00313460 Rroxscaffold_4G00313470 Rroxscaffold_4G00330630 Rroxscaffold_5G00347070 Rroxscaffold_5G00347110 Rroxscaffold_5G00378670 Rroxscaffold_5G00378690 Rroxscaffold_5G00378720 Rroxscaffold_5G00378730 Rroxscaffold_5G00378740 Rroxscaffold_5G00378760 Rroxscaffold_5G00378780 Rroxscaffold_5G00378790 Rroxscaffold_5G00378800 Rroxscaffold_5G00378810 Rroxscaffold_5G00378820 Rroxscaffold_5G00378840 Rroxscaffold_5G00378860 Rroxscaffold_5G00378870 Rroxscaffold_7G00196060
rosa_rugosa	Rorug01G0142200.1 Rorug01G0332800 Rorug02G0012200 Rorug02G0248300 Rorug03G0219000 Rorug03G0219100 Rorug03G0219200 Rorug04G0035100 Rorug04G0301500 Rorug04G0301500 Rorug04G0301700 Rorug04G0301800 Rorug04G0301800 Rorug04G0301900 Rorug04G0302000 Rorug04G0302500 Rorug04G0302600 Rorug04G0302700 Rorug04G0302800 Rorug04G0302900 Rorug04G0303000 Rorug04G0303000 Rorug04G0303100 Rorug04G0303200 Rorug04G0303300 Rorug04G0303400 Rorug04G0303500 Rorug04G0303500 Rorug05G0087800 Rorug05G0088200 Rorug05G0326300 Rorug06G0173000
rosa_samantha	Rh2AG222400 Rh4DG224800 Rh4DG359900 Rh4DG360000 Rh4DG360100 Rh4DG360200 Rh4DG360300 Rh4DG360500 Rh4DG360700 Rh4DG360800 Rh4DG360900 Rh4DG361000 Rh5DG177900 Rh5DG178200 Rh5DG178400 Rh6CG187800
rosa_wichuraiana	Rw1G013580 Rw4G009020 Rw4G019580 Rw4G030990 Rw4G031000 Rw4G031220 Rw4G031230 Rw4G031240 Rw4G031250 Rw4G031260 Rw4G031270 Rw4G031280 Rw4G031290 Rw4G031310 Rw4G031320 Rw4G031330 Rw4G031340 Rw4G031360 Rw4G031370 Rw5G016310 Rw5G016320 Rw5G016330 Rw5G036760 Rw6G016090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	392
AccII	CGCG	1 cut(s)	630
AcuI	CTGAAG	2 cut(s)	213, 309
AfiI	CCNNNNNNNGG	1 cut(s)	392
AgsI	TTSAA	5 cut(s)	107, 175, 401, 496, 604
AjnI	CCWGG	1 cut(s)	342
AluBI	AGCT	5 cut(s)	85, 209, 457, 619, 672
AluI	AGCT	5 cut(s)	85, 209, 457, 619, 672
Alw21I	GWGCWC	1 cut(s)	459
ApeKI	GCWGC	1 cut(s)	644
ArsI	GACNNNNNNTTYG	2 cut(s)	410, 442
AspS9I	GGNCC	1 cut(s)	251
AvaII	GGWCC	1 cut(s)	251
BanII	GRGCYC	1 cut(s)	459
Bbv12I	GWGCWC	1 cut(s)	459
BbvI	GCAGC	1 cut(s)	631
BccI	CCATC	1 cut(s)	567
BceAI	ACGGC	1 cut(s)	579
BciT130I	CCWGG	1 cut(s)	344
BfaI	CTAG	1 cut(s)	125
BisI	GCNGC	1 cut(s)	645
BlsI	GCNGC	1 cut(s)	646
Bme1390I	CCNGG	1 cut(s)	344
Bme18I	GGWCC	1 cut(s)	251
BmgT120I	GGNCC	1 cut(s)	251
BmrFI	CCNGG	1 cut(s)	344
BmrI	ACTGGG	1 cut(s)	86
BmuI	ACTGGG	1 cut(s)	86
BsaJI	CCNNGG	3 cut(s)	254, 342, 546
BsaXI	ACNNNNNCTCC	2 cut(s)	387, 417
Bsc4I	CCNNNNNNNGG	1 cut(s)	392
Bse1I	ACTGG	1 cut(s)	81
BseBI	CCWGG	1 cut(s)	344
BseDI	CCNNGG	3 cut(s)	254, 342, 546
BseGI	GGATG	1 cut(s)	578
BseLI	CCNNNNNNNGG	1 cut(s)	392
BseMII	CTCAG	1 cut(s)	472
BseNI	ACTGG	1 cut(s)	81
BseXI	GCAGC	1 cut(s)	631
BsgI	GTGCAG	1 cut(s)	116
Bsh1236I	CGCG	1 cut(s)	630
BsiHKAI	GWGCWC	1 cut(s)	459
BslFI	GGGAC	1 cut(s)	168
BslI	CCNNNNNNNGG	1 cut(s)	392
BsmFI	GGGAC	1 cut(s)	168
Bsp1286I	GDGCHC	1 cut(s)	459
Bsp143I	GATC	2 cut(s)	3, 406
Bsp19I	CCATGG	1 cut(s)	546
BspCNI	CTCAG	1 cut(s)	471
BspFNI	CGCG	1 cut(s)	630
BsrI	ACTGG	1 cut(s)	81
BssECI	CCNNGG	3 cut(s)	254, 342, 546
BssMI	GATC	2 cut(s)	3, 406
BssT1I	CCWWGG	1 cut(s)	546
Bst2UI	CCWGG	1 cut(s)	344
Bst6I	CTCTTC	1 cut(s)	189
BstAPI	GCANNNNNTGC	1 cut(s)	299
BstDEI	CTNAG	1 cut(s)	458
BstDSI	CCRYGG	1 cut(s)	546
BstF5I	GGATG	1 cut(s)	578
BstFNI	CGCG	1 cut(s)	630
BstKTI	GATC	2 cut(s)	6, 409
BstMBI	GATC	2 cut(s)	3, 406
BstMWI	GCNNNNNNNGC	2 cut(s)	299, 636
BstNI	CCWGG	1 cut(s)	344
BstSCI	CCNGG	1 cut(s)	342
BstUI	CGCG	1 cut(s)	630
BstV1I	GCAGC	1 cut(s)	631
BtgI	CCRYGG	1 cut(s)	546
BtsCI	GGATG	1 cut(s)	578
BtsI	GCAGTG	1 cut(s)	128
BtsIMutI	CAGTG	2 cut(s)	128, 285
Cfr13I	GGNCC	1 cut(s)	251
CviAII	CATG	3 cut(s)	137, 392, 547
CviJI	RGCY	9 cut(s)	85, 209, 270, 457, 472, 505, 619, 639, 672
CviKI_1	RGCY	9 cut(s)	85, 209, 270, 457, 472, 505, 619, 639, 672
DdeI	CTNAG	1 cut(s)	458
DpnI	GATC	2 cut(s)	5, 408
DpnII	GATC	2 cut(s)	3, 406
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
Ecl136II	GAGCTC	1 cut(s)	457
Eco130I	CCWWGG	1 cut(s)	546
Eco24I	GRGCYC	1 cut(s)	459
Eco32I	GATATC	1 cut(s)	553
Eco47I	GGWCC	1 cut(s)	251
Eco53kI	GAGCTC	1 cut(s)	457
Eco57I	CTGAAG	2 cut(s)	213, 309
EcoICRI	GAGCTC	1 cut(s)	457
EcoO109I	RGGNCCY	1 cut(s)	251
EcoRII	CCWGG	1 cut(s)	342
EcoRV	GATATC	1 cut(s)	553
EcoT14I	CCWWGG	1 cut(s)	546
EcoT38I	GRGCYC	1 cut(s)	459
ErhI	CCWWGG	1 cut(s)	546
FaeI	CATG	3 cut(s)	140, 395, 550
FalI	AAGNNNNNCTT	2 cut(s)	393, 425
FaqI	GGGAC	1 cut(s)	168
FatI	CATG	3 cut(s)	136, 391, 546
Fnu4HI	GCNGC	1 cut(s)	645
FokI	GGATG	1 cut(s)	585
FriOI	GRGCYC	1 cut(s)	459
Fsp4HI	GCNGC	1 cut(s)	645
FspBI	CTAG	1 cut(s)	125
GluI	GCNGC	1 cut(s)	645
Hin1II	CATG	3 cut(s)	140, 395, 550
HinfI	GANTC	1 cut(s)	313
Hpy166II	GTNNAC	1 cut(s)	355
Hpy188I	TCNGA	3 cut(s)	258, 430, 564
Hpy8I	GTNNAC	1 cut(s)	355
Hpy99I	CGWCG	1 cut(s)	600
HpyAV	CCTTC	5 cut(s)	340, 373, 495, 566, 650
HpyCH4IV	ACGT	1 cut(s)	443
HpyCH4V	TGCA	4 cut(s)	112, 133, 529, 647
HpyF10VI	GCNNNNNNNGC	2 cut(s)	299, 636
HpyF3I	CTNAG	1 cut(s)	458
HpySE526I	ACGT	1 cut(s)	443
Hsp92II	CATG	3 cut(s)	140, 395, 550
Kzo9I	GATC	2 cut(s)	3, 406
LpnPI	CCDG	7 cut(s)	62, 156, 192, 234, 329, 356, 605
Lsp1109I	GCAGC	1 cut(s)	631
MaeI	CTAG	1 cut(s)	125
MaeII	ACGT	1 cut(s)	443
MalI	GATC	2 cut(s)	5, 408
MboI	GATC	2 cut(s)	3, 406
MboII	GAAGA	4 cut(s)	23, 206, 413, 625
MhlI	GDGCHC	1 cut(s)	459
MluCI	AATT	3 cut(s)	90, 107, 259
MnlI	CCTC	5 cut(s)	17, 61, 190, 264, 562
MseI	TTAA	1 cut(s)	204
MspR9I	CCNGG	1 cut(s)	344
MvaI	CCWGG	1 cut(s)	344
MvnI	CGCG	1 cut(s)	630
MwoI	GCNNNNNNNGC	2 cut(s)	299, 636
NcoI	CCATGG	1 cut(s)	546
NdeII	GATC	2 cut(s)	3, 406
NlaIII	CATG	3 cut(s)	140, 395, 550
PfeI	GAWTC	1 cut(s)	313
PflMI	CCANNNNNTGG	1 cut(s)	392
PkrI	GCNGC	1 cut(s)	646
PpuMI	RGGWCCY	1 cut(s)	251
Psp124BI	GAGCTC	1 cut(s)	459
Psp5II	RGGWCCY	1 cut(s)	251
Psp6I	CCWGG	1 cut(s)	342
PspGI	CCWGG	1 cut(s)	342
PspPI	GGNCC	1 cut(s)	251
PspPPI	RGGWCCY	1 cut(s)	251
SacI	GAGCTC	1 cut(s)	459
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	1 cut(s)	645
Sau3AI	GATC	2 cut(s)	3, 406
Sau96I	GGNCC	1 cut(s)	251
ScrFI	CCNGG	1 cut(s)	344
SduI	GDGCHC	1 cut(s)	459
SinI	GGWCC	1 cut(s)	251
Sse9I	AATT	3 cut(s)	90, 107, 259
SspMI	CTAG	1 cut(s)	125
SstI	GAGCTC	1 cut(s)	459
StyD4I	CCNGG	1 cut(s)	342
StyI	CCWWGG	1 cut(s)	546
TaiI	ACGT	1 cut(s)	446
TaqI	TCGA	1 cut(s)	273
TasI	AATT	3 cut(s)	90, 107, 259
TfiI	GAWTC	1 cut(s)	313
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TscAI	CASTG	2 cut(s)	135, 292
TseI	GCWGC	1 cut(s)	644
TspDTI	ATGAA	4 cut(s)	153, 402, 603, 669
TspRI	CASTG	2 cut(s)	135, 292
Van91I	CCANNNNNTGG	1 cut(s)	392
VpaK11BI	GGWCC	1 cut(s)	251
XcmI	CCANNNNNNNNNTGG	1 cut(s)	498
XspI	CTAG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.