Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0000078

Physical Location & Seq

Genomic Coordinates Reverse (-)

58114643 .. 58120153

Gene Structure 5511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG360100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGAGCAAGCCCAAAAGTTTAACCCATGACATATTTTCTCAAGTTCAACCTCATACTCACTCATGGAGAAAAATATATGGGAAGGTTTTTCTTCAGTGGCATGGTACTGAACCTCAGTTGGTGATCTTTGAGCCTGAGTTGTGCAAAGAGATACTGAATAACAAGGACGGAGTTTATATGCAAAAGGATCGCCAAGGCTTTGAGAAGAACCTAGTAGGAAATGGCCTTGGGGCTGCTGAGGGGGAGCATTGGTCAAAATTGCGAAAAATAGCCAACCTTGCCTTTCATGGAGAGAGTTTAAAAGTAAATTGTTACAGTTACTCATGCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0008395 GO:0009719 GO:0009725 GO:0009741 GO:0010033 GO:0010268 GO:0010817 GO:0014070 GO:0016128 GO:0016131 GO:0016491 GO:0033993 GO:0042221 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00905 map00905

Pfam Domains

Protein Families

p450

Protein Analysis

110

Amino Acids

12.69

Weight (kDa)

8.79

Isoelectric Point (pI)

32.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	18 - 99	9.2e-09	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000078)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15240 FvH4_3g15270 FvH4_3g15280 FvH4_3g32750 FvH4_3g32760 FvH4_3g32760 FvH4_3g32880 FvH4_4g08190 FvH4_4g29160 FvH4_4g29370 FvH4_4g29400 FvH4_4g29420 FvH4_4g29420 FvH4_4g29420 FvH4_4g29430 FvH4_4g29440 FvH4_4g29450 FvH4_4g29450 FvH4_4g29450 FvH4_4g29460 FvH4_4g29461 FvH4_4g29462 FvH4_4g29463 FvH4_4g29480 FvH4_4g29481 FvH4_4g29482 FvH4_4g29483 FvH4_4g29484 FvH4_6g26720 FvH4_6g26720
malus_domestica	MD00G1065200.v1.1 MD06G1145800.v1.1 MD06G1146000.v1.1 MD06G1146700.v1.1 MD13G1031000.v1.1 MD13G1033900.v1.1 MD13G1057000.v1.1 MD13G1057100.v1.1 MD13G1057200.v1.1 MD13G1057400.v1.1 MD13G1057800.v1.1 MD13G1058000.v1.1 MD13G1058100.v1.1 MD13G1058200.v1.1 MD13G1058300.v1.1 MD13G1058500.v1.1 MD13G1058600.v1.1 MD13G1058700.v1.1 MD16G1035700.v1.1 MD16G1056400.v1.1 MD16G1056600.v1.1 MD16G1056700.v1.1 MD16G1056900.v1.1 MD16G1058100.v1.1
prunus_persica	Prupe.1G291100_v2.0.a1 Prupe.1G291200_v2.0.a1 Prupe.1G291500_v2.0.a1 Prupe.1G291600_v2.0.a1 Prupe.1G291700_v2.0.a1 Prupe.1G291800_v2.0.a1 Prupe.1G291900_v2.0.a1 Prupe.1G292000_v2.0.a1 Prupe.1G292100_v2.0.a1 Prupe.1G292400_v2.0.a1 Prupe.1G292500_v2.0.a1 Prupe.1G292600_v2.0.a1 Prupe.1G292700_v2.0.a1 Prupe.1G292800_v2.0.a1 Prupe.1G296000_v2.0.a1 Prupe.1G296100_v2.0.a1 Prupe.1G296300_v2.0.a1 Prupe.1G296600_v2.0.a1 Prupe.1G296900_v2.0.a1 Prupe.1G534600_v2.0.a1 Prupe.5G046700_v2.0.a1 Prupe.8G021800_v2.0.a1 Prupe.8G026400_v2.0.a1
pyrus_communis	pycom06g13510 pycom06g13530 pycom06g13540 pycom06g13570 pycom06g13590 pycom06g13620 pycom13g02710 pycom13g02930 pycom13g05100 pycom13g05110 pycom13g05140 pycom13g05160 pycom13g05170 pycom13g05190 pycom13g05200 pycom13g05210 pycom13g05220 pycom16g03060 pycom16g04940 pycom16g04960 pycom16g04990 pycom16g05000 pycom16g05080
rosa_chinensis	RchiOBHm_Chr1g0337981 RchiOBHm_Chr1g0337991 RchiOBHm_Chr1g0339431 RchiOBHm_Chr4g0402401 RchiOBHm_Chr4g0420571 RchiOBHm_Chr4g0420601 RchiOBHm_Chr4g0420611 RchiOBHm_Chr4g0420621 RchiOBHm_Chr4g0420631 RchiOBHm_Chr4g0437211 RchiOBHm_Chr4g0437221 RchiOBHm_Chr4g0437251 RchiOBHm_Chr4g0437431 RchiOBHm_Chr4g0437441 RchiOBHm_Chr4g0437491 RchiOBHm_Chr4g0437501 RchiOBHm_Chr4g0437511 RchiOBHm_Chr4g0437521 RchiOBHm_Chr4g0437531 RchiOBHm_Chr4g0437541 RchiOBHm_Chr4g0437551 RchiOBHm_Chr4g0437591 RchiOBHm_Chr4g0437631 RchiOBHm_Chr4g0437641 RchiOBHm_Chr4g0437671 RchiOBHm_Chr4g0437681 RchiOBHm_Chr4g0437711 RchiOBHm_Chr4g0437731 RchiOBHm_Chr4g0437741 RchiOBHm_Chr4g0437751 RchiOBHm_Chr5g0025681 RchiOBHm_Chr5g0025711 RchiOBHm_Chr5g0025731 RchiOBHm_Chr5g0059841 RchiOBHm_Chr6g0272651
rosa_laevigata	RLG00000006420 RLG00000006421 RLG00000006423 RLG00000006426 RLG00000006427 RLG00000006428 RLG00000006429 RLG00000006431 RLG00000006433 RLG00000006434 RLG00000006435 RLG00000006436 RLG00000006437 RLG00000006455 RLG00000007746 RLG00000007747 RLG00000007748 RLG00000007749 RLG00000007750 RLG00000009091 RLG00000009092 RLG00000009095 RLG00000009096 RLG00000017856 RLG00000028094 RLG00000029230 RLG00000029231 RLG00000030008 RLG00000032859 RLG00000032860 RLG00000032861 RLG00000032865 RLG00000032868 RLG00000035332
rosa_multiflora	Rmu_co7986016.1_g000001 Rmu_co8226539.1_g000001 Rmu_co8349613.1_g000001 Rmu_sc0000272.1_g000014 Rmu_sc0000591.1_g000003 Rmu_sc0000613.1_g000013 Rmu_sc0001629.1_g000022 Rmu_sc0001629.1_g000025 Rmu_sc0002131.1_g000027 Rmu_sc0002137.1_g000006 Rmu_sc0002137.1_g000014 Rmu_sc0002137.1_g000019 Rmu_sc0002472.1_g000002 Rmu_sc0002472.1_g000012 Rmu_sc0002472.1_g000018 Rmu_sc0002472.1_g000034 Rmu_sc0002472.1_g000040 Rmu_sc0002472.1_g000051 Rmu_sc0002638.1_g000005 Rmu_sc0002638.1_g000010 Rmu_sc0002638.1_g000025 Rmu_sc0002638.1_g000030 Rmu_sc0002638.1_g000037 Rmu_sc0002638.1_g000042 Rmu_sc0004339.1_g000019 Rmu_sc0005580.1_g000013 Rmu_sc0006617.1_g000002 Rmu_sc0006986.1_g000003 Rmu_sc0006986.1_g000017 Rmu_sc0008352.1_g000001 Rmu_sc0008352.1_g000002 Rmu_sc0009431.1_g000011 Rmu_sc0011080.1_g000003 Rmu_sc0011080.1_g000006 Rmu_sc0016549.1_g000001 Rmu_sc0016549.1_g000002 Rmu_sc0017154.1_g000001 Rmu_sc0017155.1_g000001 Rmu_sc0028438.1_g000001 Rmu_sc0041413.1_g000001 Rmu_ssc0000330.1_g000022
rosa_roxburghii	Rroxscaffold_1G00020750 Rroxscaffold_1G00053460 Rroxscaffold_1G00054250 Rroxscaffold_1G00054260 Rroxscaffold_1G00054270 Rroxscaffold_1G00054290 Rroxscaffold_2G00120210 Rroxscaffold_4G00313460 Rroxscaffold_4G00313470 Rroxscaffold_4G00330630 Rroxscaffold_5G00347070 Rroxscaffold_5G00347110 Rroxscaffold_5G00378670 Rroxscaffold_5G00378690 Rroxscaffold_5G00378720 Rroxscaffold_5G00378730 Rroxscaffold_5G00378740 Rroxscaffold_5G00378760 Rroxscaffold_5G00378780 Rroxscaffold_5G00378790 Rroxscaffold_5G00378800 Rroxscaffold_5G00378810 Rroxscaffold_5G00378820 Rroxscaffold_5G00378840 Rroxscaffold_5G00378860 Rroxscaffold_5G00378870 Rroxscaffold_7G00196060
rosa_rugosa	Rorug01G0142200.1 Rorug01G0332800 Rorug02G0012200 Rorug02G0248300 Rorug03G0219000 Rorug03G0219100 Rorug03G0219200 Rorug04G0035100 Rorug04G0301500 Rorug04G0301500 Rorug04G0301700 Rorug04G0301800 Rorug04G0301800 Rorug04G0301900 Rorug04G0302000 Rorug04G0302500 Rorug04G0302600 Rorug04G0302700 Rorug04G0302800 Rorug04G0302900 Rorug04G0303000 Rorug04G0303000 Rorug04G0303100 Rorug04G0303200 Rorug04G0303300 Rorug04G0303400 Rorug04G0303500 Rorug04G0303500 Rorug05G0087800 Rorug05G0088200 Rorug05G0326300 Rorug06G0173000
rosa_samantha	Rh2AG222400 Rh4DG224800 Rh4DG359900 Rh4DG360000 Rh4DG360100 Rh4DG360200 Rh4DG360300 Rh4DG360500 Rh4DG360700 Rh4DG360800 Rh4DG360900 Rh4DG361000 Rh5DG177900 Rh5DG178200 Rh5DG178400 Rh6CG187800
rosa_wichuraiana	Rw1G013580 Rw4G009020 Rw4G019580 Rw4G030990 Rw4G031000 Rw4G031220 Rw4G031230 Rw4G031240 Rw4G031250 Rw4G031260 Rw4G031270 Rw4G031280 Rw4G031290 Rw4G031310 Rw4G031320 Rw4G031330 Rw4G031340 Rw4G031360 Rw4G031370 Rw5G016310 Rw5G016320 Rw5G016330 Rw5G036760 Rw6G016090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	195
AcuI	CTGAAG	1 cut(s)	77
AfaI	GTAC	1 cut(s)	106
AgsI	TTSAA	1 cut(s)	47
AlwI	GGATC	1 cut(s)	195
AoxI	GGCC	1 cut(s)	223
ApeKI	GCWGC	1 cut(s)	233
AsuHPI	GGTGA	1 cut(s)	133
BbvCI	CCTCAGC	1 cut(s)	237
BbvI	GCAGC	1 cut(s)	220
BcgI	CGANNNNNNTGC	2 cut(s)	170, 204
BfaI	CTAG	1 cut(s)	212
BisI	GCNGC	1 cut(s)	234
BlsI	GCNGC	1 cut(s)	235
Bpu10I	CCTNAGC	1 cut(s)	237
BpuEI	CTTGAG	1 cut(s)	24
BsaJI	CCNNGG	2 cut(s)	193, 226
BsaXI	ACNNNNNCTCC	2 cut(s)	236, 266
BseDI	CCNNGG	2 cut(s)	193, 226
BseMII	CTCAG	3 cut(s)	126, 128, 228
BseXI	GCAGC	1 cut(s)	220
BshFI	GGCC	1 cut(s)	225
BsnI	GGCC	1 cut(s)	225
Bsp143I	GATC	2 cut(s)	123, 187
BspANI	GGCC	1 cut(s)	225
BspCNI	CTCAG	3 cut(s)	127, 127, 229
BspPI	GGATC	1 cut(s)	195
BssECI	CCNNGG	2 cut(s)	193, 226
BssMI	GATC	2 cut(s)	123, 187
BssT1I	CCWWGG	2 cut(s)	193, 226
Bst4CI	ACNGT	1 cut(s)	317
BstC8I	GCNNGC	1 cut(s)	8
BstDEI	CTNAG	3 cut(s)	114, 135, 237
BstKTI	GATC	2 cut(s)	126, 190
BstMBI	GATC	2 cut(s)	123, 187
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstV1I	GCAGC	1 cut(s)	220
BsuRI	GGCC	1 cut(s)	225
BtsIMutI	CAGTG	1 cut(s)	101
Cac8I	GCNNGC	1 cut(s)	8
Csp6I	GTAC	1 cut(s)	105
CviAII	CATG	5 cut(s)	26, 63, 101, 287, 324
CviJI	RGCY	6 cut(s)	10, 133, 198, 225, 233, 272
CviKI_1	RGCY	6 cut(s)	10, 133, 198, 225, 233, 272
CviQI	GTAC	1 cut(s)	105
DdeI	CTNAG	3 cut(s)	114, 135, 237
DpnI	GATC	2 cut(s)	125, 189
DpnII	GATC	2 cut(s)	123, 187
DraI	TTTAAA	1 cut(s)	300
Eco130I	CCWWGG	2 cut(s)	193, 226
Eco57I	CTGAAG	1 cut(s)	77
EcoT14I	CCWWGG	2 cut(s)	193, 226
ErhI	CCWWGG	2 cut(s)	193, 226
FaeI	CATG	5 cut(s)	29, 66, 104, 290, 327
FatI	CATG	5 cut(s)	25, 62, 100, 286, 323
Fnu4HI	GCNGC	1 cut(s)	234
Fsp4HI	GCNGC	1 cut(s)	234
FspBI	CTAG	1 cut(s)	212
GluI	GCNGC	1 cut(s)	234
HaeIII	GGCC	1 cut(s)	225
Hin1II	CATG	5 cut(s)	29, 66, 104, 290, 327
HphI	GGTGA	1 cut(s)	133
HpyAV	CCTTC	1 cut(s)	76
HpyCH4III	ACNGT	1 cut(s)	317
HpyCH4V	TGCA	2 cut(s)	144, 181
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpyF3I	CTNAG	3 cut(s)	114, 135, 237
Hsp92II	CATG	5 cut(s)	29, 66, 104, 290, 327
Kzo9I	GATC	2 cut(s)	123, 187
LmnI	GCTCC	1 cut(s)	244
LpnPI	CCDG	1 cut(s)	147
Lsp1109I	GCAGC	1 cut(s)	220
MaeI	CTAG	1 cut(s)	212
MaeIII	GTNAC	2 cut(s)	311, 317
MalI	GATC	2 cut(s)	125, 189
MboI	GATC	2 cut(s)	123, 187
MboII	GAAGA	2 cut(s)	83, 217
MluCI	AATT	2 cut(s)	257, 307
MnlI	CCTC	3 cut(s)	60, 123, 232
MseI	TTAA	2 cut(s)	20, 299
MwoI	GCNNNNNNNGC	1 cut(s)	278
NdeII	GATC	2 cut(s)	123, 187
NlaIII	CATG	5 cut(s)	29, 66, 104, 290, 327
PkrI	GCNGC	1 cut(s)	235
RsaI	GTAC	1 cut(s)	106
RsaNI	GTAC	1 cut(s)	105
SaqAI	TTAA	2 cut(s)	20, 299
SatI	GCNGC	1 cut(s)	234
Sau3AI	GATC	2 cut(s)	123, 187
SetI	ASST	5 cut(s)	52, 87, 115, 213, 279
SmlI	CTYRAG	1 cut(s)	39
SmoI	CTYRAG	1 cut(s)	39
Sse9I	AATT	2 cut(s)	257, 307
SspMI	CTAG	1 cut(s)	212
StyI	CCWWGG	2 cut(s)	193, 226
TaaI	ACNGT	1 cut(s)	317
TasI	AATT	2 cut(s)	257, 307
Tru1I	TTAA	2 cut(s)	20, 299
Tru9I	TTAA	2 cut(s)	20, 299
TscAI	CASTG	1 cut(s)	101
TseI	GCWGC	1 cut(s)	233
TspDTI	ATGAA	1 cut(s)	275
TspGWI	ACGGA	1 cut(s)	183
TspRI	CASTG	1 cut(s)	101
XspI	CTAG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.