Rmu_sc0009431.1_g000011

cytochrome P450

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009431.1
Physical Location & Seq
Reverse (-)
65895 .. 66519
625 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009431.1_g000011.1.cds

Sequence Viewer

Length: 549 bp
atgagatcttcaggaggcccagtggtcattatttcaggttttctgtgtcttttctgttctgtagctctgcttttcaagatctttcacaaaatatggtggaccccgaatcgcatacagaaattgatggcttcacagggaatcagaggtcctccttacagactaatccatggaaacacgaaagaaatctccaacatgcacaaggaagccaggaacagacccttaggtttatcacacaacatatttgcttatgttgagcctcatgttgactcatggagcaatatatatgggaagaattatctccaatggctcggttcccgagctcagttgatcattcgagaacctgagttatgcaaacagatactgaacaacaaagatggagcttatctgaaaaaaccacctgaagactttgcaaagaagctattaggatatggccttgtaacagctgaagcagaaaagtgggtgaaattgcgaaagatttccaaccatgccttccatggagagagcttaaaagtaagttcttattatcagttaatggaaattcttgcttga

Protein Analysis

182

Amino Acids

20.87

Weight (kDa)

9.73

Isoelectric Point (pI)

39.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000078)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g15240 FvH4_3g15270 FvH4_3g15280 FvH4_3g32750 FvH4_3g32760 FvH4_3g32760 FvH4_3g32880 FvH4_4g08190 FvH4_4g29160 FvH4_4g29370 FvH4_4g29400 FvH4_4g29420 FvH4_4g29420 FvH4_4g29420 FvH4_4g29430 FvH4_4g29440 FvH4_4g29450 FvH4_4g29450 FvH4_4g29450 FvH4_4g29460 FvH4_4g29461 FvH4_4g29462 FvH4_4g29463 FvH4_4g29480 FvH4_4g29481 FvH4_4g29482 FvH4_4g29483 FvH4_4g29484 FvH4_6g26720 FvH4_6g26720
malus_domestica MD00G1065200.v1.1 MD06G1145800.v1.1 MD06G1146000.v1.1 MD06G1146700.v1.1 MD13G1031000.v1.1 MD13G1033900.v1.1 MD13G1057000.v1.1 MD13G1057100.v1.1 MD13G1057200.v1.1 MD13G1057400.v1.1 MD13G1057800.v1.1 MD13G1058000.v1.1 MD13G1058100.v1.1 MD13G1058200.v1.1 MD13G1058300.v1.1 MD13G1058500.v1.1 MD13G1058600.v1.1 MD13G1058700.v1.1 MD16G1035700.v1.1 MD16G1056400.v1.1 MD16G1056600.v1.1 MD16G1056700.v1.1 MD16G1056900.v1.1 MD16G1058100.v1.1
prunus_persica Prupe.1G291100_v2.0.a1 Prupe.1G291200_v2.0.a1 Prupe.1G291500_v2.0.a1 Prupe.1G291600_v2.0.a1 Prupe.1G291700_v2.0.a1 Prupe.1G291800_v2.0.a1 Prupe.1G291900_v2.0.a1 Prupe.1G292000_v2.0.a1 Prupe.1G292100_v2.0.a1 Prupe.1G292400_v2.0.a1 Prupe.1G292500_v2.0.a1 Prupe.1G292600_v2.0.a1 Prupe.1G292700_v2.0.a1 Prupe.1G292800_v2.0.a1 Prupe.1G296000_v2.0.a1 Prupe.1G296100_v2.0.a1 Prupe.1G296300_v2.0.a1 Prupe.1G296600_v2.0.a1 Prupe.1G296900_v2.0.a1 Prupe.1G534600_v2.0.a1 Prupe.5G046700_v2.0.a1 Prupe.8G021800_v2.0.a1 Prupe.8G026400_v2.0.a1
pyrus_communis pycom06g13510 pycom06g13530 pycom06g13540 pycom06g13570 pycom06g13590 pycom06g13620 pycom13g02710 pycom13g02930 pycom13g05100 pycom13g05110 pycom13g05140 pycom13g05160 pycom13g05170 pycom13g05190 pycom13g05200 pycom13g05210 pycom13g05220 pycom16g03060 pycom16g04940 pycom16g04960 pycom16g04990 pycom16g05000 pycom16g05080
rosa_chinensis RchiOBHm_Chr1g0337981 RchiOBHm_Chr1g0337991 RchiOBHm_Chr1g0339431 RchiOBHm_Chr4g0402401 RchiOBHm_Chr4g0420571 RchiOBHm_Chr4g0420601 RchiOBHm_Chr4g0420611 RchiOBHm_Chr4g0420621 RchiOBHm_Chr4g0420631 RchiOBHm_Chr4g0437211 RchiOBHm_Chr4g0437221 RchiOBHm_Chr4g0437251 RchiOBHm_Chr4g0437431 RchiOBHm_Chr4g0437441 RchiOBHm_Chr4g0437491 RchiOBHm_Chr4g0437501 RchiOBHm_Chr4g0437511 RchiOBHm_Chr4g0437521 RchiOBHm_Chr4g0437531 RchiOBHm_Chr4g0437541 RchiOBHm_Chr4g0437551 RchiOBHm_Chr4g0437591 RchiOBHm_Chr4g0437631 RchiOBHm_Chr4g0437641 RchiOBHm_Chr4g0437671 RchiOBHm_Chr4g0437681 RchiOBHm_Chr4g0437711 RchiOBHm_Chr4g0437731 RchiOBHm_Chr4g0437741 RchiOBHm_Chr4g0437751 RchiOBHm_Chr5g0025681 RchiOBHm_Chr5g0025711 RchiOBHm_Chr5g0025731 RchiOBHm_Chr5g0059841 RchiOBHm_Chr6g0272651
rosa_laevigata RLG00000006420 RLG00000006421 RLG00000006423 RLG00000006426 RLG00000006427 RLG00000006428 RLG00000006429 RLG00000006431 RLG00000006433 RLG00000006434 RLG00000006435 RLG00000006436 RLG00000006437 RLG00000006455 RLG00000007746 RLG00000007747 RLG00000007748 RLG00000007749 RLG00000007750 RLG00000009091 RLG00000009092 RLG00000009095 RLG00000009096 RLG00000017856 RLG00000028094 RLG00000029230 RLG00000029231 RLG00000030008 RLG00000032859 RLG00000032860 RLG00000032861 RLG00000032865 RLG00000032868 RLG00000035332
rosa_multiflora Rmu_co7986016.1_g000001 Rmu_co8226539.1_g000001 Rmu_co8349613.1_g000001 Rmu_sc0000272.1_g000014 Rmu_sc0000591.1_g000003 Rmu_sc0000613.1_g000013 Rmu_sc0001629.1_g000022 Rmu_sc0001629.1_g000025 Rmu_sc0002131.1_g000027 Rmu_sc0002137.1_g000006 Rmu_sc0002137.1_g000014 Rmu_sc0002137.1_g000019 Rmu_sc0002472.1_g000002 Rmu_sc0002472.1_g000012 Rmu_sc0002472.1_g000018 Rmu_sc0002472.1_g000034 Rmu_sc0002472.1_g000040 Rmu_sc0002472.1_g000051 Rmu_sc0002638.1_g000005 Rmu_sc0002638.1_g000010 Rmu_sc0002638.1_g000025 Rmu_sc0002638.1_g000030 Rmu_sc0002638.1_g000037 Rmu_sc0002638.1_g000042 Rmu_sc0004339.1_g000019 Rmu_sc0005580.1_g000013 Rmu_sc0006617.1_g000002 Rmu_sc0006986.1_g000003 Rmu_sc0006986.1_g000017 Rmu_sc0008352.1_g000001 Rmu_sc0008352.1_g000002 Rmu_sc0009431.1_g000011 Rmu_sc0011080.1_g000003 Rmu_sc0011080.1_g000006 Rmu_sc0016549.1_g000001 Rmu_sc0016549.1_g000002 Rmu_sc0017154.1_g000001 Rmu_sc0017155.1_g000001 Rmu_sc0028438.1_g000001 Rmu_sc0041413.1_g000001 Rmu_ssc0000330.1_g000022
rosa_roxburghii Rroxscaffold_1G00020750 Rroxscaffold_1G00053460 Rroxscaffold_1G00054250 Rroxscaffold_1G00054260 Rroxscaffold_1G00054270 Rroxscaffold_1G00054290 Rroxscaffold_2G00120210 Rroxscaffold_4G00313460 Rroxscaffold_4G00313470 Rroxscaffold_4G00330630 Rroxscaffold_5G00347070 Rroxscaffold_5G00347110 Rroxscaffold_5G00378670 Rroxscaffold_5G00378690 Rroxscaffold_5G00378720 Rroxscaffold_5G00378730 Rroxscaffold_5G00378740 Rroxscaffold_5G00378760 Rroxscaffold_5G00378780 Rroxscaffold_5G00378790 Rroxscaffold_5G00378800 Rroxscaffold_5G00378810 Rroxscaffold_5G00378820 Rroxscaffold_5G00378840 Rroxscaffold_5G00378860 Rroxscaffold_5G00378870 Rroxscaffold_7G00196060
rosa_rugosa Rorug01G0142200.1 Rorug01G0332800 Rorug02G0012200 Rorug02G0248300 Rorug03G0219000 Rorug03G0219100 Rorug03G0219200 Rorug04G0035100 Rorug04G0301500 Rorug04G0301500 Rorug04G0301700 Rorug04G0301800 Rorug04G0301800 Rorug04G0301900 Rorug04G0302000 Rorug04G0302500 Rorug04G0302600 Rorug04G0302700 Rorug04G0302800 Rorug04G0302900 Rorug04G0303000 Rorug04G0303000 Rorug04G0303100 Rorug04G0303200 Rorug04G0303300 Rorug04G0303400 Rorug04G0303500 Rorug04G0303500 Rorug05G0087800 Rorug05G0088200 Rorug05G0326300 Rorug06G0173000
rosa_samantha Rh2AG222400 Rh4DG224800 Rh4DG359900 Rh4DG360000 Rh4DG360100 Rh4DG360200 Rh4DG360300 Rh4DG360500 Rh4DG360700 Rh4DG360800 Rh4DG360900 Rh4DG361000 Rh5DG177900 Rh5DG178200 Rh5DG178400 Rh6CG187800
rosa_wichuraiana Rw1G013580 Rw4G009020 Rw4G019580 Rw4G030990 Rw4G031000 Rw4G031220 Rw4G031230 Rw4G031240 Rw4G031250 Rw4G031260 Rw4G031270 Rw4G031280 Rw4G031290 Rw4G031310 Rw4G031320 Rw4G031330 Rw4G031340 Rw4G031360 Rw4G031370 Rw5G016310 Rw5G016320 Rw5G016330 Rw5G036760 Rw6G016090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 537
AcuI CTGAAG 2 cut(s) 420, 465
AgsI TTSAA 1 cut(s) 76
AjnI CCWGG 1 cut(s) 206
AjuI GAANNNNNNNTTGG 2 cut(s) 473, 505
AluBI AGCT 6 cut(s) 65, 320, 380, 418, 443, 504
AluI AGCT 6 cut(s) 65, 320, 380, 418, 443, 504
Alw21I GWGCWC 1 cut(s) 322
AlwNI CAGNNNCTG 1 cut(s) 361
Ama87I CYCGRG 1 cut(s) 315
AoxI GGCC 2 cut(s) 16, 430
ApoI RAATTY 1 cut(s) 537
Asp700I GAANNNNTTC 1 cut(s) 475
AspS9I GGNCC 3 cut(s) 17, 99, 146
AsuHPI GGTGA 1 cut(s) 472
AvaI CYCGRG 1 cut(s) 315
AvaII GGWCC 2 cut(s) 99, 146
AxyI CCTNAGG 1 cut(s) 220
BanII GRGCYC 1 cut(s) 322
BbsI GAAGAC 1 cut(s) 408
Bbv12I GWGCWC 1 cut(s) 322
BccI CCATC 2 cut(s) 118, 368
BciT130I CCWGG 1 cut(s) 208
BclI TGATCA 1 cut(s) 327
BfmI CTRYAG 1 cut(s) 60
BglII AGATCT 2 cut(s) 5, 78
Bme1390I CCNGG 1 cut(s) 208
Bme18I GGWCC 2 cut(s) 99, 146
BmeT110I CYCGRG 1 cut(s) 315
BmgT120I GGNCC 3 cut(s) 17, 99, 146
BmiI GGNNCC 2 cut(s) 101, 313
BmrFI CCNGG 1 cut(s) 208
BmrI ACTGGG 1 cut(s) 14
BmuI ACTGGG 1 cut(s) 14
BpiI GAAGAC 1 cut(s) 408
BsaJI CCNNGG 2 cut(s) 166, 493
BsaXI ACNNNNNCTCC 2 cut(s) 6, 36
Bse1I ACTGG 1 cut(s) 20
Bse21I CCTNAGG 1 cut(s) 220
BseBI CCWGG 1 cut(s) 208
BseDI CCNNGG 2 cut(s) 166, 493
BseMII CTCAG 2 cut(s) 333, 335
BseNI ACTGG 1 cut(s) 20
BshFI GGCC 2 cut(s) 18, 432
BsiHKAI GWGCWC 1 cut(s) 322
BsiHKCI CYCGRG 1 cut(s) 315
BsnI GGCC 2 cut(s) 18, 432
BsoBI CYCGRG 1 cut(s) 315
Bsp1286I GDGCHC 1 cut(s) 322
Bsp143I GATC 3 cut(s) 5, 78, 327
Bsp19I CCATGG 2 cut(s) 166, 493
BspANI GGCC 2 cut(s) 18, 432
BspCNI CTCAG 2 cut(s) 334, 334
BspLI GGNNCC 2 cut(s) 101, 313
BsrI ACTGG 1 cut(s) 20
BssECI CCNNGG 2 cut(s) 166, 493
BssMI GATC 3 cut(s) 5, 78, 327
BssT1I CCWWGG 2 cut(s) 166, 493
Bst2UI CCWGG 1 cut(s) 208
BstDEI CTNAG 3 cut(s) 220, 321, 342
BstDSI CCRYGG 2 cut(s) 166, 493
BstKTI GATC 3 cut(s) 8, 81, 330
BstMBI GATC 3 cut(s) 5, 78, 327
BstNI CCWGG 1 cut(s) 208
BstNSI RCATGY 1 cut(s) 196
BstSCI CCNGG 1 cut(s) 206
BstSFI CTRYAG 1 cut(s) 60
BstV2I GAAGAC 1 cut(s) 408
BstX2I RGATCY 2 cut(s) 5, 78
BstYI RGATCY 2 cut(s) 5, 78
Bsu36I CCTNAGG 1 cut(s) 220
BsuRI GGCC 2 cut(s) 18, 432
BtgI CCRYGG 2 cut(s) 166, 493
BtsIMutI CAGTG 1 cut(s) 27
CaiI CAGNNNCTG 1 cut(s) 361
Cfr13I GGNCC 3 cut(s) 17, 99, 146
CviAII CATG 6 cut(s) 167, 193, 260, 270, 485, 494
DdeI CTNAG 3 cut(s) 220, 321, 342
DpnI GATC 3 cut(s) 7, 80, 329
DpnII GATC 3 cut(s) 5, 78, 327
Ecl136II GAGCTC 1 cut(s) 320
Eco130I CCWWGG 2 cut(s) 166, 493
Eco24I GRGCYC 1 cut(s) 322
Eco47I GGWCC 2 cut(s) 99, 146
Eco53kI GAGCTC 1 cut(s) 320
Eco57I CTGAAG 2 cut(s) 420, 465
Eco81I CCTNAGG 1 cut(s) 220
Eco88I CYCGRG 1 cut(s) 315
EcoICRI GAGCTC 1 cut(s) 320
EcoO109I RGGNCCY 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 206
EcoT14I CCWWGG 2 cut(s) 166, 493
EcoT38I GRGCYC 1 cut(s) 322
ErhI CCWWGG 2 cut(s) 166, 493
FaeI CATG 6 cut(s) 170, 196, 263, 273, 488, 497
FatI CATG 6 cut(s) 166, 192, 259, 269, 484, 493
FbaI TGATCA 1 cut(s) 327
FriOI GRGCYC 1 cut(s) 322
HaeIII GGCC 2 cut(s) 18, 432
Hin1II CATG 6 cut(s) 170, 196, 263, 273, 488, 497
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HinfI GANTC 3 cut(s) 106, 138, 266
HphI GGTGA 1 cut(s) 472
Hpy166II GTNNAC 2 cut(s) 99, 265
Hpy188I TCNGA 2 cut(s) 143, 387
Hpy188III TCNNGA 4 cut(s) 12, 76, 315, 335
Hpy8I GTNNAC 2 cut(s) 99, 265
HpyAV CCTTC 1 cut(s) 499
HpyCH4V TGCA 3 cut(s) 196, 351, 410
HpyF3I CTNAG 3 cut(s) 220, 321, 342
Hsp92II CATG 6 cut(s) 170, 196, 263, 273, 488, 497
Ksp22I TGATCA 1 cut(s) 327
Kzo9I GATC 3 cut(s) 5, 78, 327
LmnI GCTCC 2 cut(s) 273, 377
LpnPI CCDG 7 cut(s) 21, 33, 119, 193, 220, 354, 411
MaeIII GTNAC 1 cut(s) 436
MalI GATC 3 cut(s) 7, 80, 329
MboI GATC 3 cut(s) 5, 78, 327
MboII GAAGA 2 cut(s) 301, 413
MflI RGATCY 2 cut(s) 5, 78
MhlI GDGCHC 1 cut(s) 322
MluCI AATT 4 cut(s) 119, 292, 464, 537
MlyI GAGTC 1 cut(s) 260
MmeI TCCRAC 2 cut(s) 213, 504
MnlI CCTC 4 cut(s) 8, 137, 159, 267
MroXI GAANNNNTTC 1 cut(s) 475
MseI TTAA 2 cut(s) 506, 530
MspA1I CMGCKG 1 cut(s) 443
MspR9I CCNGG 1 cut(s) 208
MvaI CCWGG 1 cut(s) 208
NcoI CCATGG 2 cut(s) 166, 493
NdeII GATC 3 cut(s) 5, 78, 327
NlaIII CATG 6 cut(s) 170, 196, 263, 273, 488, 497
NlaIV GGNNCC 2 cut(s) 101, 313
NspI RCATGY 1 cut(s) 196
PdmI GAANNNNTTC 1 cut(s) 475
PfeI GAWTC 2 cut(s) 106, 138
PleI GAGTC 1 cut(s) 260
PpsI GAGTC 1 cut(s) 260
PpuMI RGGWCCY 1 cut(s) 146
Psp124BI GAGCTC 1 cut(s) 322
Psp5II RGGWCCY 1 cut(s) 146
Psp6I CCWGG 1 cut(s) 206
PspGI CCWGG 1 cut(s) 206
PspN4I GGNNCC 2 cut(s) 101, 313
PspPI GGNCC 3 cut(s) 17, 99, 146
PspPPI RGGWCCY 1 cut(s) 146
PstNI CAGNNNCTG 1 cut(s) 361
PsuI RGATCY 2 cut(s) 5, 78
PvuII CAGCTG 1 cut(s) 443
SacI GAGCTC 1 cut(s) 322
SaqAI TTAA 2 cut(s) 506, 530
Sau3AI GATC 3 cut(s) 5, 78, 327
Sau96I GGNCC 3 cut(s) 17, 99, 146
SchI GAGTC 1 cut(s) 260
ScrFI CCNGG 1 cut(s) 208
SduI GDGCHC 1 cut(s) 322
SfcI CTRYAG 1 cut(s) 60
SinI GGWCC 2 cut(s) 99, 146
Sse9I AATT 4 cut(s) 119, 292, 464, 537
SstI GAGCTC 1 cut(s) 322
StyD4I CCNGG 1 cut(s) 206
StyI CCWWGG 2 cut(s) 166, 493
TaqI TCGA 1 cut(s) 334
TasI AATT 4 cut(s) 119, 292, 464, 537
TfiI GAWTC 2 cut(s) 106, 138
Tru1I TTAA 2 cut(s) 506, 530
Tru9I TTAA 2 cut(s) 506, 530
TscAI CASTG 1 cut(s) 27
TspRI CASTG 1 cut(s) 27
VpaK11BI GGWCC 2 cut(s) 99, 146
XapI RAATTY 1 cut(s) 537
XceI RCATGY 1 cut(s) 196
XcmI CCANNNNNNNNNTGG 1 cut(s) 491
XmnI GAANNNNTTC 1 cut(s) 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.