RLG00000017856

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
22367515 .. 22368374
860 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017856

Sequence Viewer

Length: 741 bp
ATGGGGATTGTTATGAAAAGAGAAGAGAAGGCAATGAGTGGGGAAGAAGAGAGCTTTGGGGGTGATTTTCTGGGCTTACAGTTAAAGGCTTATCATGATAGCAATGACAACCAGAGGATTTCGATAGATGATTTAGTTGATGAGTGTAAGTCGTTTTACTCTGTTGGACAAGAGACCACAAATACTTTGCTTTCCTGGATTGTCTTTCTTCTGGCACTCCATACCGATTGGCAAGAGCAAGCTAGAAAGGAAGTCTTGCAATTATTCGGGAAAGAAACTCCAAATCCCGATGGCCTTTCCAAACTAAAAACAATGAGTATGATCATCAATGAGTCCTTGAGGCTATATTCTCCTGTTATTTACGTTCCAAGGACAGTTGAAAAGAGAGTTAAACTTGGAAAGCTCATCGTTCATGCTGATGTTGAGTTAATCATCCCATATCTAGTACTACACCATGACCTTCAATTTTGGGGACCAGATGCACATCTTTTCAAACCAGACCGATTCTCAGAAGGAGTTTCTAAAGCTACTAACAACAACATAGCTACATTCTTACCATTTTCGATGGGGCATAGGAATTGTGTGGGCACTAACTTTGCCACCATTGAAGACAAGATTGCTCTTTCAATGATCCTACAGCACTACTTCTTTACGCTGTCTCCGGGTTATGTTCACTCGCCCTTGAAGCATCTGGCAGTGCGCCCACAACATGGAGTTCAAATAATGCTACACTCACTATGA

Protein Analysis

247

Amino Acids

27.98

Weight (kDa)

6.3

Isoelectric Point (pI)

37.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 21 - 228 1.8e-45 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000078)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g15240 FvH4_3g15270 FvH4_3g15280 FvH4_3g32750 FvH4_3g32760 FvH4_3g32760 FvH4_3g32880 FvH4_4g08190 FvH4_4g29160 FvH4_4g29370 FvH4_4g29400 FvH4_4g29420 FvH4_4g29420 FvH4_4g29420 FvH4_4g29430 FvH4_4g29440 FvH4_4g29450 FvH4_4g29450 FvH4_4g29450 FvH4_4g29460 FvH4_4g29461 FvH4_4g29462 FvH4_4g29463 FvH4_4g29480 FvH4_4g29481 FvH4_4g29482 FvH4_4g29483 FvH4_4g29484 FvH4_6g26720 FvH4_6g26720
malus_domestica MD00G1065200.v1.1 MD06G1145800.v1.1 MD06G1146000.v1.1 MD06G1146700.v1.1 MD13G1031000.v1.1 MD13G1033900.v1.1 MD13G1057000.v1.1 MD13G1057100.v1.1 MD13G1057200.v1.1 MD13G1057400.v1.1 MD13G1057800.v1.1 MD13G1058000.v1.1 MD13G1058100.v1.1 MD13G1058200.v1.1 MD13G1058300.v1.1 MD13G1058500.v1.1 MD13G1058600.v1.1 MD13G1058700.v1.1 MD16G1035700.v1.1 MD16G1056400.v1.1 MD16G1056600.v1.1 MD16G1056700.v1.1 MD16G1056900.v1.1 MD16G1058100.v1.1
prunus_persica Prupe.1G291100_v2.0.a1 Prupe.1G291200_v2.0.a1 Prupe.1G291500_v2.0.a1 Prupe.1G291600_v2.0.a1 Prupe.1G291700_v2.0.a1 Prupe.1G291800_v2.0.a1 Prupe.1G291900_v2.0.a1 Prupe.1G292000_v2.0.a1 Prupe.1G292100_v2.0.a1 Prupe.1G292400_v2.0.a1 Prupe.1G292500_v2.0.a1 Prupe.1G292600_v2.0.a1 Prupe.1G292700_v2.0.a1 Prupe.1G292800_v2.0.a1 Prupe.1G296000_v2.0.a1 Prupe.1G296100_v2.0.a1 Prupe.1G296300_v2.0.a1 Prupe.1G296600_v2.0.a1 Prupe.1G296900_v2.0.a1 Prupe.1G534600_v2.0.a1 Prupe.5G046700_v2.0.a1 Prupe.8G021800_v2.0.a1 Prupe.8G026400_v2.0.a1
pyrus_communis pycom06g13510 pycom06g13530 pycom06g13540 pycom06g13570 pycom06g13590 pycom06g13620 pycom13g02710 pycom13g02930 pycom13g05100 pycom13g05110 pycom13g05140 pycom13g05160 pycom13g05170 pycom13g05190 pycom13g05200 pycom13g05210 pycom13g05220 pycom16g03060 pycom16g04940 pycom16g04960 pycom16g04990 pycom16g05000 pycom16g05080
rosa_chinensis RchiOBHm_Chr1g0337981 RchiOBHm_Chr1g0337991 RchiOBHm_Chr1g0339431 RchiOBHm_Chr4g0402401 RchiOBHm_Chr4g0420571 RchiOBHm_Chr4g0420601 RchiOBHm_Chr4g0420611 RchiOBHm_Chr4g0420621 RchiOBHm_Chr4g0420631 RchiOBHm_Chr4g0437211 RchiOBHm_Chr4g0437221 RchiOBHm_Chr4g0437251 RchiOBHm_Chr4g0437431 RchiOBHm_Chr4g0437441 RchiOBHm_Chr4g0437491 RchiOBHm_Chr4g0437501 RchiOBHm_Chr4g0437511 RchiOBHm_Chr4g0437521 RchiOBHm_Chr4g0437531 RchiOBHm_Chr4g0437541 RchiOBHm_Chr4g0437551 RchiOBHm_Chr4g0437591 RchiOBHm_Chr4g0437631 RchiOBHm_Chr4g0437641 RchiOBHm_Chr4g0437671 RchiOBHm_Chr4g0437681 RchiOBHm_Chr4g0437711 RchiOBHm_Chr4g0437731 RchiOBHm_Chr4g0437741 RchiOBHm_Chr4g0437751 RchiOBHm_Chr5g0025681 RchiOBHm_Chr5g0025711 RchiOBHm_Chr5g0025731 RchiOBHm_Chr5g0059841 RchiOBHm_Chr6g0272651
rosa_laevigata RLG00000006420 RLG00000006421 RLG00000006423 RLG00000006426 RLG00000006427 RLG00000006428 RLG00000006429 RLG00000006431 RLG00000006433 RLG00000006434 RLG00000006435 RLG00000006436 RLG00000006437 RLG00000006455 RLG00000007746 RLG00000007747 RLG00000007748 RLG00000007749 RLG00000007750 RLG00000009091 RLG00000009092 RLG00000009095 RLG00000009096 RLG00000017856 RLG00000028094 RLG00000029230 RLG00000029231 RLG00000030008 RLG00000032859 RLG00000032860 RLG00000032861 RLG00000032865 RLG00000032868 RLG00000035332
rosa_multiflora Rmu_co7986016.1_g000001 Rmu_co8226539.1_g000001 Rmu_co8349613.1_g000001 Rmu_sc0000272.1_g000014 Rmu_sc0000591.1_g000003 Rmu_sc0000613.1_g000013 Rmu_sc0001629.1_g000022 Rmu_sc0001629.1_g000025 Rmu_sc0002131.1_g000027 Rmu_sc0002137.1_g000006 Rmu_sc0002137.1_g000014 Rmu_sc0002137.1_g000019 Rmu_sc0002472.1_g000002 Rmu_sc0002472.1_g000012 Rmu_sc0002472.1_g000018 Rmu_sc0002472.1_g000034 Rmu_sc0002472.1_g000040 Rmu_sc0002472.1_g000051 Rmu_sc0002638.1_g000005 Rmu_sc0002638.1_g000010 Rmu_sc0002638.1_g000025 Rmu_sc0002638.1_g000030 Rmu_sc0002638.1_g000037 Rmu_sc0002638.1_g000042 Rmu_sc0004339.1_g000019 Rmu_sc0005580.1_g000013 Rmu_sc0006617.1_g000002 Rmu_sc0006986.1_g000003 Rmu_sc0006986.1_g000017 Rmu_sc0008352.1_g000001 Rmu_sc0008352.1_g000002 Rmu_sc0009431.1_g000011 Rmu_sc0011080.1_g000003 Rmu_sc0011080.1_g000006 Rmu_sc0016549.1_g000001 Rmu_sc0016549.1_g000002 Rmu_sc0017154.1_g000001 Rmu_sc0017155.1_g000001 Rmu_sc0028438.1_g000001 Rmu_sc0041413.1_g000001 Rmu_ssc0000330.1_g000022
rosa_roxburghii Rroxscaffold_1G00020750 Rroxscaffold_1G00053460 Rroxscaffold_1G00054250 Rroxscaffold_1G00054260 Rroxscaffold_1G00054270 Rroxscaffold_1G00054290 Rroxscaffold_2G00120210 Rroxscaffold_4G00313460 Rroxscaffold_4G00313470 Rroxscaffold_4G00330630 Rroxscaffold_5G00347070 Rroxscaffold_5G00347110 Rroxscaffold_5G00378670 Rroxscaffold_5G00378690 Rroxscaffold_5G00378720 Rroxscaffold_5G00378730 Rroxscaffold_5G00378740 Rroxscaffold_5G00378760 Rroxscaffold_5G00378780 Rroxscaffold_5G00378790 Rroxscaffold_5G00378800 Rroxscaffold_5G00378810 Rroxscaffold_5G00378820 Rroxscaffold_5G00378840 Rroxscaffold_5G00378860 Rroxscaffold_5G00378870 Rroxscaffold_7G00196060
rosa_rugosa Rorug01G0142200.1 Rorug01G0332800 Rorug02G0012200 Rorug02G0248300 Rorug03G0219000 Rorug03G0219100 Rorug03G0219200 Rorug04G0035100 Rorug04G0301500 Rorug04G0301500 Rorug04G0301700 Rorug04G0301800 Rorug04G0301800 Rorug04G0301900 Rorug04G0302000 Rorug04G0302500 Rorug04G0302600 Rorug04G0302700 Rorug04G0302800 Rorug04G0302900 Rorug04G0303000 Rorug04G0303000 Rorug04G0303100 Rorug04G0303200 Rorug04G0303300 Rorug04G0303400 Rorug04G0303500 Rorug04G0303500 Rorug05G0087800 Rorug05G0088200 Rorug05G0326300 Rorug06G0173000
rosa_samantha Rh2AG222400 Rh4DG224800 Rh4DG359900 Rh4DG360000 Rh4DG360100 Rh4DG360200 Rh4DG360300 Rh4DG360500 Rh4DG360700 Rh4DG360800 Rh4DG360900 Rh4DG361000 Rh5DG177900 Rh5DG178200 Rh5DG178400 Rh6CG187800
rosa_wichuraiana Rw1G013580 Rw4G009020 Rw4G019580 Rw4G030990 Rw4G031000 Rw4G031220 Rw4G031230 Rw4G031240 Rw4G031250 Rw4G031260 Rw4G031270 Rw4G031280 Rw4G031290 Rw4G031310 Rw4G031320 Rw4G031330 Rw4G031340 Rw4G031360 Rw4G031370 Rw5G016310 Rw5G016320 Rw5G016330 Rw5G036760 Rw6G016090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 710
AclWI GGATC 1 cut(s) 625
AfaI GTAC 1 cut(s) 447
AfiI CCNNNNNNNGG 1 cut(s) 710
AgsI TTSAA 7 cut(s) 380, 464, 493, 608, 627, 685, 719
AjnI CCWGG 1 cut(s) 194
AjuI GAANNNNNNNTTGG 2 cut(s) 39, 71
AluBI AGCT 5 cut(s) 54, 242, 403, 527, 545
AluI AGCT 5 cut(s) 54, 242, 403, 527, 545
Alw26I GTCTC 2 cut(s) 167, 663
AlwI GGATC 1 cut(s) 625
AoxI GGCC 1 cut(s) 292
AspLEI GCGC 1 cut(s) 702
AspS9I GGNCC 1 cut(s) 473
AsuC2I CCSGG 1 cut(s) 663
AsuHPI GGTGA 1 cut(s) 74
AvaII GGWCC 1 cut(s) 473
BaeGI GKGCMC 1 cut(s) 590
BbsI GAAGAC 1 cut(s) 615
BccI CCATC 2 cut(s) 284, 559
BciT130I CCWGG 1 cut(s) 196
BclI TGATCA 1 cut(s) 321
BcnI CCSGG 1 cut(s) 663
BcoDI GTCTC 2 cut(s) 167, 663
BfaI CTAG 2 cut(s) 243, 443
BfmI CTRYAG 1 cut(s) 635
BmcAI AGTACT 1 cut(s) 447
Bme1390I CCNGG 2 cut(s) 196, 663
Bme18I GGWCC 1 cut(s) 473
BmgT120I GGNCC 1 cut(s) 473
BmiI GGNNCC 1 cut(s) 474
BmrFI CCNGG 2 cut(s) 196, 663
BmsI GCATC 2 cut(s) 469, 697
BpiI GAAGAC 1 cut(s) 615
BpuEI CTTGAG 1 cut(s) 358
BpuMI CCSGG 1 cut(s) 663
BsaBI GATNNNNATC 1 cut(s) 483
BsaI GGTCTC 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 368
BsaXI ACNNNNNCTCC 2 cut(s) 643, 673
Bsc4I CCNNNNNNNGG 1 cut(s) 710
Bse3DI GCAATG 2 cut(s) 39, 109
Bse8I GATNNNNATC 1 cut(s) 483
BseBI CCWGG 1 cut(s) 196
BseDI CCNNGG 1 cut(s) 368
BseGI GGATG 1 cut(s) 432
BseJI GATNNNNATC 1 cut(s) 483
BseLI CCNNNNNNNGG 1 cut(s) 710
BseMI GCAATG 2 cut(s) 39, 109
BseMII CTCAG 1 cut(s) 522
BseSI GKGCMC 1 cut(s) 590
BshFI GGCC 1 cut(s) 294
BsiSI CCGG 1 cut(s) 662
BslFI GGGAC 1 cut(s) 486
BslI CCNNNNNNNGG 1 cut(s) 710
BsmAI GTCTC 2 cut(s) 167, 663
BsmFI GGGAC 1 cut(s) 486
BsnI GGCC 1 cut(s) 294
Bso31I GGTCTC 1 cut(s) 167
Bsp1286I GDGCHC 1 cut(s) 590
Bsp143I GATC 2 cut(s) 321, 630
BspANI GGCC 1 cut(s) 294
BspCNI CTCAG 1 cut(s) 521
BspHI TCATGA 1 cut(s) 94
BspLI GGNNCC 1 cut(s) 474
BspPI GGATC 1 cut(s) 625
BspTNI GGTCTC 1 cut(s) 167
BsrDI GCAATG 2 cut(s) 39, 109
BssECI CCNNGG 1 cut(s) 368
BssMI GATC 2 cut(s) 321, 630
BssT1I CCWWGG 1 cut(s) 368
Bst2UI CCWGG 1 cut(s) 196
Bst4CI ACNGT 2 cut(s) 81, 376
Bst6I CTCTTC 2 cut(s) 18, 42
BstC8I GCNNGC 1 cut(s) 240
BstDEI CTNAG 1 cut(s) 508
BstF5I GGATG 1 cut(s) 432
BstHHI GCGC 1 cut(s) 702
BstKTI GATC 2 cut(s) 324, 633
BstMAI GTCTC 2 cut(s) 167, 663
BstMBI GATC 2 cut(s) 321, 630
BstMWI GCNNNNNNNGC 1 cut(s) 685
BstNI CCWGG 1 cut(s) 196
BstSCI CCNGG 2 cut(s) 194, 661
BstSFI CTRYAG 1 cut(s) 635
BstSLI GKGCMC 1 cut(s) 590
BstV2I GAAGAC 1 cut(s) 615
BsuRI GGCC 1 cut(s) 294
BtsCI GGATG 1 cut(s) 432
BtsI GCAGTG 1 cut(s) 702
BtsIMutI CAGTG 1 cut(s) 702
Cac8I GCNNGC 1 cut(s) 240
CciI TCATGA 1 cut(s) 94
CfoI GCGC 1 cut(s) 702
Cfr13I GGNCC 1 cut(s) 473
Csp6I GTAC 1 cut(s) 446
CviAII CATG 4 cut(s) 95, 413, 455, 710
CviJI RGCY 9 cut(s) 54, 75, 89, 242, 294, 343, 403, 527, 545
CviKI_1 RGCY 9 cut(s) 54, 75, 89, 242, 294, 343, 403, 527, 545
CviQI GTAC 1 cut(s) 446
DdeI CTNAG 1 cut(s) 508
DpnI GATC 2 cut(s) 323, 632
DpnII GATC 2 cut(s) 321, 630
Eam1104I CTCTTC 2 cut(s) 18, 42
EarI CTCTTC 2 cut(s) 18, 42
Eco130I CCWWGG 1 cut(s) 368
Eco31I GGTCTC 1 cut(s) 167
Eco47I GGWCC 1 cut(s) 473
EcoRII CCWGG 1 cut(s) 194
EcoT14I CCWWGG 1 cut(s) 368
ErhI CCWWGG 1 cut(s) 368
FaeI CATG 4 cut(s) 98, 416, 458, 713
FalI AAGNNNNNCTT 2 cut(s) 239, 271
FaqI GGGAC 1 cut(s) 486
FatI CATG 4 cut(s) 94, 412, 454, 709
FbaI TGATCA 1 cut(s) 321
FokI GGATG 1 cut(s) 419
FspBI CTAG 2 cut(s) 243, 443
GlaI GCGC 1 cut(s) 701
HaeIII GGCC 1 cut(s) 294
HapII CCGG 1 cut(s) 662
HhaI GCGC 1 cut(s) 702
Hin1II CATG 4 cut(s) 98, 416, 458, 713
Hin6I GCGC 1 cut(s) 700
HinP1I GCGC 1 cut(s) 700
HinfI GANTC 2 cut(s) 332, 504
HpaII CCGG 1 cut(s) 662
HphI GGTGA 1 cut(s) 74
Hpy166II GTNNAC 1 cut(s) 673
Hpy188I TCNGA 1 cut(s) 511
Hpy188III TCNNGA 3 cut(s) 95, 268, 287
Hpy8I GTNNAC 1 cut(s) 673
HpyAV CCTTC 3 cut(s) 22, 470, 506
HpyCH4III ACNGT 2 cut(s) 81, 376
HpyCH4IV ACGT 1 cut(s) 363
HpyCH4V TGCA 2 cut(s) 259, 482
HpyF10VI GCNNNNNNNGC 1 cut(s) 685
HpyF3I CTNAG 1 cut(s) 508
HpySE526I ACGT 1 cut(s) 363
Hsp92II CATG 4 cut(s) 98, 416, 458, 713
HspAI GCGC 1 cut(s) 700
Ksp22I TGATCA 1 cut(s) 321
Kzo9I GATC 2 cut(s) 321, 630
LweI GCATC 2 cut(s) 469, 697
MaeI CTAG 2 cut(s) 243, 443
MaeII ACGT 1 cut(s) 363
MalI GATC 2 cut(s) 323, 632
MboI GATC 2 cut(s) 321, 630
MboII GAAGA 5 cut(s) 35, 56, 59, 200, 620
MhlI GDGCHC 1 cut(s) 590
MluCI AATT 3 cut(s) 260, 464, 577
MlyI GAGTC 1 cut(s) 341
MmeI TCCRAC 1 cut(s) 145
MnlI CCTC 2 cut(s) 108, 333
MseI TTAA 3 cut(s) 83, 390, 428
MslI CAYNNNNRTG 1 cut(s) 417
MspI CCGG 1 cut(s) 662
MspR9I CCNGG 2 cut(s) 196, 663
MvaI CCWGG 1 cut(s) 196
MwoI GCNNNNNNNGC 1 cut(s) 685
NciI CCSGG 1 cut(s) 663
NdeII GATC 2 cut(s) 321, 630
NlaIII CATG 4 cut(s) 98, 416, 458, 713
NlaIV GGNNCC 1 cut(s) 474
PagI TCATGA 1 cut(s) 94
PfeI GAWTC 1 cut(s) 504
PflMI CCANNNNNTGG 1 cut(s) 710
PfoI TCCNGGA 1 cut(s) 194
PleI GAGTC 1 cut(s) 340
PpsI GAGTC 1 cut(s) 340
Psp6I CCWGG 1 cut(s) 194
PspGI CCWGG 1 cut(s) 194
PspN4I GGNNCC 1 cut(s) 474
PspPI GGNCC 1 cut(s) 473
RsaI GTAC 1 cut(s) 447
RsaNI GTAC 1 cut(s) 446
RseI CAYNNNNRTG 1 cut(s) 417
SaqAI TTAA 3 cut(s) 83, 390, 428
Sau3AI GATC 2 cut(s) 321, 630
Sau96I GGNCC 1 cut(s) 473
ScaI AGTACT 1 cut(s) 447
SchI GAGTC 1 cut(s) 341
ScrFI CCNGG 2 cut(s) 196, 663
SduI GDGCHC 1 cut(s) 590
SetI ASST 7 cut(s) 56, 244, 366, 405, 462, 529, 547
SfaNI GCATC 2 cut(s) 469, 697
SfcI CTRYAG 1 cut(s) 635
SinI GGWCC 1 cut(s) 473
SmiMI CAYNNNNRTG 1 cut(s) 417
SmlI CTYRAG 1 cut(s) 337
SmoI CTYRAG 1 cut(s) 337
Sse9I AATT 3 cut(s) 260, 464, 577
SspMI CTAG 2 cut(s) 243, 443
StyD4I CCNGG 2 cut(s) 194, 661
StyI CCWWGG 1 cut(s) 368
TaaI ACNGT 2 cut(s) 81, 376
TaiI ACGT 1 cut(s) 366
TaqI TCGA 2 cut(s) 122, 563
TaqII GACCGA 1 cut(s) 516
TasI AATT 3 cut(s) 260, 464, 577
TatI WGTACW 1 cut(s) 445
TfiI GAWTC 1 cut(s) 504
Tru1I TTAA 3 cut(s) 83, 390, 428
Tru9I TTAA 3 cut(s) 83, 390, 428
TscAI CASTG 1 cut(s) 702
TspDTI ATGAA 2 cut(s) 29, 401
TspRI CASTG 1 cut(s) 702
Van91I CCANNNNNTGG 1 cut(s) 710
VpaK11BI GGWCC 1 cut(s) 473
XspI CTAG 2 cut(s) 243, 443
ZrmI AGTACT 1 cut(s) 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.