Rorug04G0035100

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
5244670 .. 5245314
645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0035100.1

Sequence Viewer

Length: 645 bp
ATGGTGCCTGCCAAGGTCCAAATATGTGCATGGAGGGCCTGCCAAAACATCCTACCCACCAGAGAGCGTTTACTCACCAAGGGCTATGATGGTGAAACGAATTGTCTACTGTGCTCTGCTACACTAGAAGACACAACTCACATCTTCTTTAAGTGTCCGATTGCAAAAGAAATTTTCTCTGCTCCCCCGTTTAATTTACAATCTATAGCTATGCCAAATACGATTTTTAAGGAATGGATGCTAGAAGCTGCACTTGTACTCAAACCAAAGACATTTGAAAAGCTATTAATACTAATCTGGTCTCTCTGGAAAAATCGGAACACTACTCTGTGGGAGAATAATTCAAAACCAACATCGGTTCTTTTGTGCAGCTCCTTGGCTTGGTTGGAAGATTTCCAGAAAGCTAGAGCTACTTCTTCAGCACCGAAGAAAGTAGAAAAACACCACTGGCAGCCAACTAATGGGAGCAGAGTGAAAATAAATGTAGATGGTGCGTTCTTACTATCGCAGATGCATGGGGGAGCTGGAGGTATTGCTCGAGACCCAACTGGGCAATTCATAGCTGCTTTTGCTCACCATCTACCTCATGTAAACTCTACTAAACAGGCAGAACTGCTTGCTATCCGACTTGAGATGGCAGTCTAA

Protein Analysis

214

Amino Acids

23.98

Weight (kDa)

9.2

Isoelectric Point (pI)

37.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 2 - 58 7.1e-14 zinc-binding in reverse transcriptase
RVT_3 PF13456 161 - 209 4.7e-06 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000078)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g15240 FvH4_3g15270 FvH4_3g15280 FvH4_3g32750 FvH4_3g32760 FvH4_3g32760 FvH4_3g32880 FvH4_4g08190 FvH4_4g29160 FvH4_4g29370 FvH4_4g29400 FvH4_4g29420 FvH4_4g29420 FvH4_4g29420 FvH4_4g29430 FvH4_4g29440 FvH4_4g29450 FvH4_4g29450 FvH4_4g29450 FvH4_4g29460 FvH4_4g29461 FvH4_4g29462 FvH4_4g29463 FvH4_4g29480 FvH4_4g29481 FvH4_4g29482 FvH4_4g29483 FvH4_4g29484 FvH4_6g26720 FvH4_6g26720
malus_domestica MD00G1065200.v1.1 MD06G1145800.v1.1 MD06G1146000.v1.1 MD06G1146700.v1.1 MD13G1031000.v1.1 MD13G1033900.v1.1 MD13G1057000.v1.1 MD13G1057100.v1.1 MD13G1057200.v1.1 MD13G1057400.v1.1 MD13G1057800.v1.1 MD13G1058000.v1.1 MD13G1058100.v1.1 MD13G1058200.v1.1 MD13G1058300.v1.1 MD13G1058500.v1.1 MD13G1058600.v1.1 MD13G1058700.v1.1 MD16G1035700.v1.1 MD16G1056400.v1.1 MD16G1056600.v1.1 MD16G1056700.v1.1 MD16G1056900.v1.1 MD16G1058100.v1.1
prunus_persica Prupe.1G291100_v2.0.a1 Prupe.1G291200_v2.0.a1 Prupe.1G291500_v2.0.a1 Prupe.1G291600_v2.0.a1 Prupe.1G291700_v2.0.a1 Prupe.1G291800_v2.0.a1 Prupe.1G291900_v2.0.a1 Prupe.1G292000_v2.0.a1 Prupe.1G292100_v2.0.a1 Prupe.1G292400_v2.0.a1 Prupe.1G292500_v2.0.a1 Prupe.1G292600_v2.0.a1 Prupe.1G292700_v2.0.a1 Prupe.1G292800_v2.0.a1 Prupe.1G296000_v2.0.a1 Prupe.1G296100_v2.0.a1 Prupe.1G296300_v2.0.a1 Prupe.1G296600_v2.0.a1 Prupe.1G296900_v2.0.a1 Prupe.1G534600_v2.0.a1 Prupe.5G046700_v2.0.a1 Prupe.8G021800_v2.0.a1 Prupe.8G026400_v2.0.a1
pyrus_communis pycom06g13510 pycom06g13530 pycom06g13540 pycom06g13570 pycom06g13590 pycom06g13620 pycom13g02710 pycom13g02930 pycom13g05100 pycom13g05110 pycom13g05140 pycom13g05160 pycom13g05170 pycom13g05190 pycom13g05200 pycom13g05210 pycom13g05220 pycom16g03060 pycom16g04940 pycom16g04960 pycom16g04990 pycom16g05000 pycom16g05080
rosa_chinensis RchiOBHm_Chr1g0337981 RchiOBHm_Chr1g0337991 RchiOBHm_Chr1g0339431 RchiOBHm_Chr4g0402401 RchiOBHm_Chr4g0420571 RchiOBHm_Chr4g0420601 RchiOBHm_Chr4g0420611 RchiOBHm_Chr4g0420621 RchiOBHm_Chr4g0420631 RchiOBHm_Chr4g0437211 RchiOBHm_Chr4g0437221 RchiOBHm_Chr4g0437251 RchiOBHm_Chr4g0437431 RchiOBHm_Chr4g0437441 RchiOBHm_Chr4g0437491 RchiOBHm_Chr4g0437501 RchiOBHm_Chr4g0437511 RchiOBHm_Chr4g0437521 RchiOBHm_Chr4g0437531 RchiOBHm_Chr4g0437541 RchiOBHm_Chr4g0437551 RchiOBHm_Chr4g0437591 RchiOBHm_Chr4g0437631 RchiOBHm_Chr4g0437641 RchiOBHm_Chr4g0437671 RchiOBHm_Chr4g0437681 RchiOBHm_Chr4g0437711 RchiOBHm_Chr4g0437731 RchiOBHm_Chr4g0437741 RchiOBHm_Chr4g0437751 RchiOBHm_Chr5g0025681 RchiOBHm_Chr5g0025711 RchiOBHm_Chr5g0025731 RchiOBHm_Chr5g0059841 RchiOBHm_Chr6g0272651
rosa_laevigata RLG00000006420 RLG00000006421 RLG00000006423 RLG00000006426 RLG00000006427 RLG00000006428 RLG00000006429 RLG00000006431 RLG00000006433 RLG00000006434 RLG00000006435 RLG00000006436 RLG00000006437 RLG00000006455 RLG00000007746 RLG00000007747 RLG00000007748 RLG00000007749 RLG00000007750 RLG00000009091 RLG00000009092 RLG00000009095 RLG00000009096 RLG00000017856 RLG00000028094 RLG00000029230 RLG00000029231 RLG00000030008 RLG00000032859 RLG00000032860 RLG00000032861 RLG00000032865 RLG00000032868 RLG00000035332
rosa_multiflora Rmu_co7986016.1_g000001 Rmu_co8226539.1_g000001 Rmu_co8349613.1_g000001 Rmu_sc0000272.1_g000014 Rmu_sc0000591.1_g000003 Rmu_sc0000613.1_g000013 Rmu_sc0001629.1_g000022 Rmu_sc0001629.1_g000025 Rmu_sc0002131.1_g000027 Rmu_sc0002137.1_g000006 Rmu_sc0002137.1_g000014 Rmu_sc0002137.1_g000019 Rmu_sc0002472.1_g000002 Rmu_sc0002472.1_g000012 Rmu_sc0002472.1_g000018 Rmu_sc0002472.1_g000034 Rmu_sc0002472.1_g000040 Rmu_sc0002472.1_g000051 Rmu_sc0002638.1_g000005 Rmu_sc0002638.1_g000010 Rmu_sc0002638.1_g000025 Rmu_sc0002638.1_g000030 Rmu_sc0002638.1_g000037 Rmu_sc0002638.1_g000042 Rmu_sc0004339.1_g000019 Rmu_sc0005580.1_g000013 Rmu_sc0006617.1_g000002 Rmu_sc0006986.1_g000003 Rmu_sc0006986.1_g000017 Rmu_sc0008352.1_g000001 Rmu_sc0008352.1_g000002 Rmu_sc0009431.1_g000011 Rmu_sc0011080.1_g000003 Rmu_sc0011080.1_g000006 Rmu_sc0016549.1_g000001 Rmu_sc0016549.1_g000002 Rmu_sc0017154.1_g000001 Rmu_sc0017155.1_g000001 Rmu_sc0028438.1_g000001 Rmu_sc0041413.1_g000001 Rmu_ssc0000330.1_g000022
rosa_roxburghii Rroxscaffold_1G00020750 Rroxscaffold_1G00053460 Rroxscaffold_1G00054250 Rroxscaffold_1G00054260 Rroxscaffold_1G00054270 Rroxscaffold_1G00054290 Rroxscaffold_2G00120210 Rroxscaffold_4G00313460 Rroxscaffold_4G00313470 Rroxscaffold_4G00330630 Rroxscaffold_5G00347070 Rroxscaffold_5G00347110 Rroxscaffold_5G00378670 Rroxscaffold_5G00378690 Rroxscaffold_5G00378720 Rroxscaffold_5G00378730 Rroxscaffold_5G00378740 Rroxscaffold_5G00378760 Rroxscaffold_5G00378780 Rroxscaffold_5G00378790 Rroxscaffold_5G00378800 Rroxscaffold_5G00378810 Rroxscaffold_5G00378820 Rroxscaffold_5G00378840 Rroxscaffold_5G00378860 Rroxscaffold_5G00378870 Rroxscaffold_7G00196060
rosa_rugosa Rorug01G0142200.1 Rorug01G0332800 Rorug02G0012200 Rorug02G0248300 Rorug03G0219000 Rorug03G0219100 Rorug03G0219200 Rorug04G0035100 Rorug04G0301500 Rorug04G0301500 Rorug04G0301700 Rorug04G0301800 Rorug04G0301800 Rorug04G0301900 Rorug04G0302000 Rorug04G0302500 Rorug04G0302600 Rorug04G0302700 Rorug04G0302800 Rorug04G0302900 Rorug04G0303000 Rorug04G0303000 Rorug04G0303100 Rorug04G0303200 Rorug04G0303300 Rorug04G0303400 Rorug04G0303500 Rorug04G0303500 Rorug05G0087800 Rorug05G0088200 Rorug05G0326300 Rorug06G0173000
rosa_samantha Rh2AG222400 Rh4DG224800 Rh4DG359900 Rh4DG360000 Rh4DG360100 Rh4DG360200 Rh4DG360300 Rh4DG360500 Rh4DG360700 Rh4DG360800 Rh4DG360900 Rh4DG361000 Rh5DG177900 Rh5DG178200 Rh5DG178400 Rh6CG187800
rosa_wichuraiana Rw1G013580 Rw4G009020 Rw4G019580 Rw4G030990 Rw4G031000 Rw4G031220 Rw4G031230 Rw4G031240 Rw4G031250 Rw4G031260 Rw4G031270 Rw4G031280 Rw4G031290 Rw4G031310 Rw4G031320 Rw4G031330 Rw4G031340 Rw4G031360 Rw4G031370 Rw5G016310 Rw5G016320 Rw5G016330 Rw5G036760 Rw6G016090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccB7I CCANNNNNTGG 1 cut(s) 461
AccI GTMKAC 1 cut(s) 106
AcsI RAATTY 1 cut(s) 171
AcuI CTGAAG 1 cut(s) 402
AfaI GTAC 1 cut(s) 258
AfiI CCNNNNNNNGG 2 cut(s) 381, 461
AgsI TTSAA 2 cut(s) 278, 345
AluBI AGCT 8 cut(s) 209, 248, 283, 372, 404, 410, 524, 563
AluI AGCT 8 cut(s) 209, 248, 283, 372, 404, 410, 524, 563
Alw21I GWGCWC 1 cut(s) 116
Alw26I GTCTC 2 cut(s) 306, 534
Ama87I CYCGRG 1 cut(s) 537
AoxI GGCC 1 cut(s) 36
ApeKI GCWGC 4 cut(s) 248, 369, 451, 563
ApoI RAATTY 1 cut(s) 171
AseI ATTAAT 1 cut(s) 287
AspS9I GGNCC 2 cut(s) 16, 36
AsuHPI GGTGA 3 cut(s) 67, 104, 566
AvaI CYCGRG 1 cut(s) 537
AvaII GGWCC 1 cut(s) 16
BanI GGYRCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 135
Bbv12I GWGCWC 1 cut(s) 116
BbvI GCAGC 4 cut(s) 235, 381, 463, 550
BccI CCATC 4 cut(s) 83, 482, 585, 628
BcoDI GTCTC 2 cut(s) 306, 534
BfaI CTAG 3 cut(s) 125, 242, 405
BfmI CTRYAG 1 cut(s) 204
BisI GCNGC 4 cut(s) 249, 370, 452, 564
BlsI GCNGC 4 cut(s) 250, 371, 453, 565
Bme18I GGWCC 1 cut(s) 16
BmeT110I CYCGRG 1 cut(s) 537
BmgT120I GGNCC 2 cut(s) 16, 36
BmiI GGNNCC 1 cut(s) 6
BmrI ACTGGG 1 cut(s) 558
BmsI GCATC 2 cut(s) 228, 501
BmuI ACTGGG 1 cut(s) 558
BpiI GAAGAC 1 cut(s) 135
BpmI CTGGAG 1 cut(s) 546
BsaI GGTCTC 2 cut(s) 306, 534
BsaJI CCNNGG 3 cut(s) 12, 78, 375
Bsc4I CCNNNNNNNGG 2 cut(s) 381, 461
Bse1I ACTGG 2 cut(s) 452, 553
BseDI CCNNGG 3 cut(s) 12, 78, 375
BseGI GGATG 2 cut(s) 48, 243
BseLI CCNNNNNNNGG 2 cut(s) 381, 461
BseNI ACTGG 2 cut(s) 452, 553
BseXI GCAGC 4 cut(s) 235, 381, 463, 550
BsgI GTGCAG 2 cut(s) 234, 388
BshFI GGCC 1 cut(s) 38
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 1 cut(s) 116
BsiHKCI CYCGRG 1 cut(s) 537
BslI CCNNNNNNNGG 2 cut(s) 381, 461
BsmAI GTCTC 2 cut(s) 306, 534
BsnI GGCC 1 cut(s) 38
Bso31I GGTCTC 2 cut(s) 306, 534
BsoBI CYCGRG 1 cut(s) 537
Bsp1286I GDGCHC 1 cut(s) 116
BspANI GGCC 1 cut(s) 38
BspLI GGNNCC 1 cut(s) 6
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 2 cut(s) 306, 534
BsrI ACTGG 2 cut(s) 452, 553
BssECI CCNNGG 3 cut(s) 12, 78, 375
BssT1I CCWWGG 3 cut(s) 12, 78, 375
Bst4CI ACNGT 1 cut(s) 111
BstC8I GCNNGC 3 cut(s) 9, 40, 618
BstF5I GGATG 2 cut(s) 48, 243
BstMAI GTCTC 2 cut(s) 306, 534
BstMWI GCNNNNNNNGC 2 cut(s) 35, 569
BstSFI CTRYAG 1 cut(s) 204
BstV1I GCAGC 4 cut(s) 235, 381, 463, 550
BstV2I GAAGAC 1 cut(s) 135
BsuRI GGCC 1 cut(s) 38
BtsCI GGATG 2 cut(s) 48, 243
BtsIMutI CAGTG 1 cut(s) 445
Cac8I GCNNGC 3 cut(s) 9, 40, 618
Cfr13I GGNCC 2 cut(s) 16, 36
Csp6I GTAC 1 cut(s) 257
CviAII CATG 3 cut(s) 30, 515, 587
CviQI GTAC 1 cut(s) 257
Eco130I CCWWGG 3 cut(s) 12, 78, 375
Eco31I GGTCTC 2 cut(s) 306, 534
Eco47I GGWCC 1 cut(s) 16
Eco57I CTGAAG 1 cut(s) 402
Eco88I CYCGRG 1 cut(s) 537
EcoO109I RGGNCCY 1 cut(s) 36
EcoT14I CCWWGG 3 cut(s) 12, 78, 375
EcoT22I ATGCAT 1 cut(s) 516
ErhI CCWWGG 3 cut(s) 12, 78, 375
FaeI CATG 3 cut(s) 33, 518, 590
FaiI YATR 8 cut(s) 25, 31, 87, 206, 212, 516, 560, 588
FalI AAGNNNNNCTT 2 cut(s) 237, 269
FatI CATG 3 cut(s) 29, 514, 586
FblI GTMKAC 1 cut(s) 106
Fnu4HI GCNGC 4 cut(s) 249, 370, 452, 564
FokI GGATG 2 cut(s) 35, 250
Fsp4HI GCNGC 4 cut(s) 249, 370, 452, 564
FspBI CTAG 3 cut(s) 125, 242, 405
GluI GCNGC 4 cut(s) 249, 370, 452, 564
GsuI CTGGAG 1 cut(s) 546
HaeIII GGCC 1 cut(s) 38
Hin1II CATG 3 cut(s) 33, 518, 590
HphI GGTGA 3 cut(s) 67, 104, 566
Hpy166II GTNNAC 3 cut(s) 71, 107, 592
Hpy188I TCNGA 3 cut(s) 159, 318, 626
Hpy188III TCNNGA 3 cut(s) 307, 397, 539
Hpy8I GTNNAC 3 cut(s) 71, 107, 592
HpyCH4III ACNGT 1 cut(s) 111
HpyCH4V TGCA 5 cut(s) 29, 164, 251, 369, 514
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 569
Hsp92II CATG 3 cut(s) 33, 518, 590
LmnI GCTCC 4 cut(s) 187, 377, 465, 521
Lsp1109I GCAGC 4 cut(s) 235, 381, 463, 550
LweI GCATC 2 cut(s) 228, 501
MaeI CTAG 3 cut(s) 125, 242, 405
MboII GAAGA 5 cut(s) 136, 140, 401, 408, 439
MhlI GDGCHC 1 cut(s) 116
MluCI AATT 5 cut(s) 100, 171, 193, 340, 554
MmeI TCCRAC 1 cut(s) 366
MnlI CCTC 3 cut(s) 27, 521, 594
Mph1103I ATGCAT 1 cut(s) 516
MseI TTAA 4 cut(s) 150, 192, 228, 287
MwoI GCNNNNNNNGC 2 cut(s) 35, 569
NlaIII CATG 3 cut(s) 33, 518, 590
NlaIV GGNNCC 1 cut(s) 6
NsiI ATGCAT 1 cut(s) 516
PaeR7I CTCGAG 1 cut(s) 537
PflMI CCANNNNNTGG 1 cut(s) 461
PkrI GCNGC 4 cut(s) 250, 371, 453, 565
PshBI ATTAAT 1 cut(s) 287
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 16, 36
RsaI GTAC 1 cut(s) 258
RsaNI GTAC 1 cut(s) 257
SaqAI TTAA 4 cut(s) 150, 192, 228, 287
SatI GCNGC 4 cut(s) 249, 370, 452, 564
Sau96I GGNCC 2 cut(s) 16, 36
SduI GDGCHC 1 cut(s) 116
SfaNI GCATC 2 cut(s) 228, 501
SfcI CTRYAG 1 cut(s) 204
Sfr274I CTCGAG 1 cut(s) 537
SinI GGWCC 1 cut(s) 16
SlaI CTCGAG 1 cut(s) 537
SmlI CTYRAG 2 cut(s) 537, 629
SmoI CTYRAG 2 cut(s) 537, 629
Sse9I AATT 5 cut(s) 100, 171, 193, 340, 554
SspMI CTAG 3 cut(s) 125, 242, 405
StyI CCWWGG 3 cut(s) 12, 78, 375
TaaI ACNGT 1 cut(s) 111
TaqI TCGA 1 cut(s) 538
TasI AATT 5 cut(s) 100, 171, 193, 340, 554
TatI WGTACW 1 cut(s) 256
Tru1I TTAA 4 cut(s) 150, 192, 228, 287
Tru9I TTAA 4 cut(s) 150, 192, 228, 287
TscAI CASTG 1 cut(s) 452
TseI GCWGC 4 cut(s) 248, 369, 451, 563
TspDTI ATGAA 1 cut(s) 547
TspRI CASTG 1 cut(s) 452
Van91I CCANNNNNTGG 1 cut(s) 461
VpaK11BI GGWCC 1 cut(s) 16
VspI ATTAAT 1 cut(s) 287
XapI RAATTY 1 cut(s) 171
XhoI CTCGAG 1 cut(s) 537
XmiI GTMKAC 1 cut(s) 106
XspI CTAG 3 cut(s) 125, 242, 405
Zsp2I ATGCAT 1 cut(s) 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.