Rorug05G0087800

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
7570240 .. 7573445
3206 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0087800.1

Sequence Viewer

Length: 648 bp
ATGAACGCCTTCAGGCTCGCCGGCGATATCACCCACTTCATCAGCATCCTCGTCCTCCTCCTCAAAATCTACGCCACCAAATCCTGCTCAGGGATCTCGCTCAAGACTCAGGAGCTCTACGCGGTGGTGTTTCTGGCGCGGTACTTGGATCTGTTCACGGATTTCATTTCGGTCTACAACTCCGTGATGAAGGTGGTGTTCATTCTGAGCTCGGTGGCGATTGTGTGGTGTATGCGGCGGCACAGAGTCGTGAAGCGGTCCTACGATAAGGCGCTGGATACGTTCCGCCATTACTATCTCGTTGGAGCTTGCTTTGTGTTTGCTCTGCTTGTTCATGAGAAGTTCACATTTCAGGAGGTCTTCTGGGCATTTTCAATATACTTGGAGGCAGTTGCAATTATTCCGCAATTAGTTTTGCTACAACGAAGTGGAAATGTGGACAATTTGACAGGGCAGTATGTTTTCTTTCTGGGGGCCTATCGTGCATTGTACATACTCAACTGGATCTACCGCTACTTTACAGAAGCAAAATTCAGTCGATGGATAGCTTGCATATCTGGTCTGGTTCAGACAGCTTTGTATGCAGATTTTTTCTACTACTACTTTCTCAGTTGGAAAAACAATGCAAAGCTTAACCTGCCAGCTTAA

Protein Analysis

215

Amino Acids

25.15

Weight (kDa)

9.37

Isoelectric Point (pI)

38.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ER_lumen_recept PF00810 28 - 171 5.1e-59 ER lumen protein retaining receptor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000078)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g15240 FvH4_3g15270 FvH4_3g15280 FvH4_3g32750 FvH4_3g32760 FvH4_3g32760 FvH4_3g32880 FvH4_4g08190 FvH4_4g29160 FvH4_4g29370 FvH4_4g29400 FvH4_4g29420 FvH4_4g29420 FvH4_4g29420 FvH4_4g29430 FvH4_4g29440 FvH4_4g29450 FvH4_4g29450 FvH4_4g29450 FvH4_4g29460 FvH4_4g29461 FvH4_4g29462 FvH4_4g29463 FvH4_4g29480 FvH4_4g29481 FvH4_4g29482 FvH4_4g29483 FvH4_4g29484 FvH4_6g26720 FvH4_6g26720
malus_domestica MD00G1065200.v1.1 MD06G1145800.v1.1 MD06G1146000.v1.1 MD06G1146700.v1.1 MD13G1031000.v1.1 MD13G1033900.v1.1 MD13G1057000.v1.1 MD13G1057100.v1.1 MD13G1057200.v1.1 MD13G1057400.v1.1 MD13G1057800.v1.1 MD13G1058000.v1.1 MD13G1058100.v1.1 MD13G1058200.v1.1 MD13G1058300.v1.1 MD13G1058500.v1.1 MD13G1058600.v1.1 MD13G1058700.v1.1 MD16G1035700.v1.1 MD16G1056400.v1.1 MD16G1056600.v1.1 MD16G1056700.v1.1 MD16G1056900.v1.1 MD16G1058100.v1.1
prunus_persica Prupe.1G291100_v2.0.a1 Prupe.1G291200_v2.0.a1 Prupe.1G291500_v2.0.a1 Prupe.1G291600_v2.0.a1 Prupe.1G291700_v2.0.a1 Prupe.1G291800_v2.0.a1 Prupe.1G291900_v2.0.a1 Prupe.1G292000_v2.0.a1 Prupe.1G292100_v2.0.a1 Prupe.1G292400_v2.0.a1 Prupe.1G292500_v2.0.a1 Prupe.1G292600_v2.0.a1 Prupe.1G292700_v2.0.a1 Prupe.1G292800_v2.0.a1 Prupe.1G296000_v2.0.a1 Prupe.1G296100_v2.0.a1 Prupe.1G296300_v2.0.a1 Prupe.1G296600_v2.0.a1 Prupe.1G296900_v2.0.a1 Prupe.1G534600_v2.0.a1 Prupe.5G046700_v2.0.a1 Prupe.8G021800_v2.0.a1 Prupe.8G026400_v2.0.a1
pyrus_communis pycom06g13510 pycom06g13530 pycom06g13540 pycom06g13570 pycom06g13590 pycom06g13620 pycom13g02710 pycom13g02930 pycom13g05100 pycom13g05110 pycom13g05140 pycom13g05160 pycom13g05170 pycom13g05190 pycom13g05200 pycom13g05210 pycom13g05220 pycom16g03060 pycom16g04940 pycom16g04960 pycom16g04990 pycom16g05000 pycom16g05080
rosa_chinensis RchiOBHm_Chr1g0337981 RchiOBHm_Chr1g0337991 RchiOBHm_Chr1g0339431 RchiOBHm_Chr4g0402401 RchiOBHm_Chr4g0420571 RchiOBHm_Chr4g0420601 RchiOBHm_Chr4g0420611 RchiOBHm_Chr4g0420621 RchiOBHm_Chr4g0420631 RchiOBHm_Chr4g0437211 RchiOBHm_Chr4g0437221 RchiOBHm_Chr4g0437251 RchiOBHm_Chr4g0437431 RchiOBHm_Chr4g0437441 RchiOBHm_Chr4g0437491 RchiOBHm_Chr4g0437501 RchiOBHm_Chr4g0437511 RchiOBHm_Chr4g0437521 RchiOBHm_Chr4g0437531 RchiOBHm_Chr4g0437541 RchiOBHm_Chr4g0437551 RchiOBHm_Chr4g0437591 RchiOBHm_Chr4g0437631 RchiOBHm_Chr4g0437641 RchiOBHm_Chr4g0437671 RchiOBHm_Chr4g0437681 RchiOBHm_Chr4g0437711 RchiOBHm_Chr4g0437731 RchiOBHm_Chr4g0437741 RchiOBHm_Chr4g0437751 RchiOBHm_Chr5g0025681 RchiOBHm_Chr5g0025711 RchiOBHm_Chr5g0025731 RchiOBHm_Chr5g0059841 RchiOBHm_Chr6g0272651
rosa_laevigata RLG00000006420 RLG00000006421 RLG00000006423 RLG00000006426 RLG00000006427 RLG00000006428 RLG00000006429 RLG00000006431 RLG00000006433 RLG00000006434 RLG00000006435 RLG00000006436 RLG00000006437 RLG00000006455 RLG00000007746 RLG00000007747 RLG00000007748 RLG00000007749 RLG00000007750 RLG00000009091 RLG00000009092 RLG00000009095 RLG00000009096 RLG00000017856 RLG00000028094 RLG00000029230 RLG00000029231 RLG00000030008 RLG00000032859 RLG00000032860 RLG00000032861 RLG00000032865 RLG00000032868 RLG00000035332
rosa_multiflora Rmu_co7986016.1_g000001 Rmu_co8226539.1_g000001 Rmu_co8349613.1_g000001 Rmu_sc0000272.1_g000014 Rmu_sc0000591.1_g000003 Rmu_sc0000613.1_g000013 Rmu_sc0001629.1_g000022 Rmu_sc0001629.1_g000025 Rmu_sc0002131.1_g000027 Rmu_sc0002137.1_g000006 Rmu_sc0002137.1_g000014 Rmu_sc0002137.1_g000019 Rmu_sc0002472.1_g000002 Rmu_sc0002472.1_g000012 Rmu_sc0002472.1_g000018 Rmu_sc0002472.1_g000034 Rmu_sc0002472.1_g000040 Rmu_sc0002472.1_g000051 Rmu_sc0002638.1_g000005 Rmu_sc0002638.1_g000010 Rmu_sc0002638.1_g000025 Rmu_sc0002638.1_g000030 Rmu_sc0002638.1_g000037 Rmu_sc0002638.1_g000042 Rmu_sc0004339.1_g000019 Rmu_sc0005580.1_g000013 Rmu_sc0006617.1_g000002 Rmu_sc0006986.1_g000003 Rmu_sc0006986.1_g000017 Rmu_sc0008352.1_g000001 Rmu_sc0008352.1_g000002 Rmu_sc0009431.1_g000011 Rmu_sc0011080.1_g000003 Rmu_sc0011080.1_g000006 Rmu_sc0016549.1_g000001 Rmu_sc0016549.1_g000002 Rmu_sc0017154.1_g000001 Rmu_sc0017155.1_g000001 Rmu_sc0028438.1_g000001 Rmu_sc0041413.1_g000001 Rmu_ssc0000330.1_g000022
rosa_roxburghii Rroxscaffold_1G00020750 Rroxscaffold_1G00053460 Rroxscaffold_1G00054250 Rroxscaffold_1G00054260 Rroxscaffold_1G00054270 Rroxscaffold_1G00054290 Rroxscaffold_2G00120210 Rroxscaffold_4G00313460 Rroxscaffold_4G00313470 Rroxscaffold_4G00330630 Rroxscaffold_5G00347070 Rroxscaffold_5G00347110 Rroxscaffold_5G00378670 Rroxscaffold_5G00378690 Rroxscaffold_5G00378720 Rroxscaffold_5G00378730 Rroxscaffold_5G00378740 Rroxscaffold_5G00378760 Rroxscaffold_5G00378780 Rroxscaffold_5G00378790 Rroxscaffold_5G00378800 Rroxscaffold_5G00378810 Rroxscaffold_5G00378820 Rroxscaffold_5G00378840 Rroxscaffold_5G00378860 Rroxscaffold_5G00378870 Rroxscaffold_7G00196060
rosa_rugosa Rorug01G0142200.1 Rorug01G0332800 Rorug02G0012200 Rorug02G0248300 Rorug03G0219000 Rorug03G0219100 Rorug03G0219200 Rorug04G0035100 Rorug04G0301500 Rorug04G0301500 Rorug04G0301700 Rorug04G0301800 Rorug04G0301800 Rorug04G0301900 Rorug04G0302000 Rorug04G0302500 Rorug04G0302600 Rorug04G0302700 Rorug04G0302800 Rorug04G0302900 Rorug04G0303000 Rorug04G0303000 Rorug04G0303100 Rorug04G0303200 Rorug04G0303300 Rorug04G0303400 Rorug04G0303500 Rorug04G0303500 Rorug05G0087800 Rorug05G0088200 Rorug05G0326300 Rorug06G0173000
rosa_samantha Rh2AG222400 Rh4DG224800 Rh4DG359900 Rh4DG360000 Rh4DG360100 Rh4DG360200 Rh4DG360300 Rh4DG360500 Rh4DG360700 Rh4DG360800 Rh4DG360900 Rh4DG361000 Rh5DG177900 Rh5DG178200 Rh5DG178400 Rh6CG187800
rosa_wichuraiana Rw1G013580 Rw4G009020 Rw4G019580 Rw4G030990 Rw4G031000 Rw4G031220 Rw4G031230 Rw4G031240 Rw4G031250 Rw4G031260 Rw4G031270 Rw4G031280 Rw4G031290 Rw4G031310 Rw4G031320 Rw4G031330 Rw4G031340 Rw4G031360 Rw4G031370 Rw5G016310 Rw5G016320 Rw5G016330 Rw5G036760 Rw6G016090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 174
AccII CGCG 2 cut(s) 122, 139
AciI CCGC 8 cut(s) 122, 139, 235, 238, 256, 286, 404, 511
AclWI GGATC 3 cut(s) 101, 156, 512
AcsI RAATTY 1 cut(s) 530
AfaI GTAC 2 cut(s) 143, 491
AfiI CCNNNNNNNGG 1 cut(s) 90
AgsI TTSAA 1 cut(s) 375
AluBI AGCT 7 cut(s) 115, 210, 308, 548, 575, 631, 644
AluI AGCT 7 cut(s) 115, 210, 308, 548, 575, 631, 644
Alw21I GWGCWC 2 cut(s) 117, 212
AlwI GGATC 3 cut(s) 101, 156, 512
AoxI GGCC 1 cut(s) 474
ApoI RAATTY 1 cut(s) 530
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 2 cut(s) 139, 274
AspS9I GGNCC 2 cut(s) 258, 474
AsuHPI GGTGA 1 cut(s) 22
AvaII GGWCC 1 cut(s) 258
BanII GRGCYC 2 cut(s) 117, 212
BarI GAAGNNNNNNTAC 2 cut(s) 245, 277
BbsI GAAGAC 1 cut(s) 352
Bbv12I GWGCWC 2 cut(s) 117, 212
BccI CCATC 1 cut(s) 534
BciVI GTATCC 1 cut(s) 271
BfoI RGCGCY 1 cut(s) 275
BfuI GTATCC 1 cut(s) 271
BisI GCNGC 2 cut(s) 236, 239
BlsI GCNGC 2 cut(s) 237, 240
Bme18I GGWCC 1 cut(s) 258
BmgT120I GGNCC 2 cut(s) 258, 474
BmiI GGNNCC 1 cut(s) 475
BmsI GCATC 1 cut(s) 54
BpiI GAAGAC 1 cut(s) 352
Bpu10I CCTNAGC 1 cut(s) 88
BpuEI CTTGAG 1 cut(s) 86
Bsc4I CCNNNNNNNGG 1 cut(s) 90
Bse118I RCCGGY 1 cut(s) 20
Bse1I ACTGG 1 cut(s) 506
BseGI GGATG 1 cut(s) 45
BseLI CCNNNNNNNGG 1 cut(s) 90
BseMII CTCAG 4 cut(s) 102, 122, 197, 622
BseNI ACTGG 1 cut(s) 506
BseRI GAGGAG 2 cut(s) 47, 50
Bsh1236I CGCG 2 cut(s) 122, 139
BshFI GGCC 1 cut(s) 476
BsiHKAI GWGCWC 2 cut(s) 117, 212
BsiSI CCGG 1 cut(s) 21
BslI CCNNNNNNNGG 1 cut(s) 90
BsnI GGCC 1 cut(s) 476
Bsp1286I GDGCHC 2 cut(s) 117, 212
Bsp1407I TGTACA 1 cut(s) 489
Bsp143I GATC 3 cut(s) 93, 148, 504
BspACI CCGC 8 cut(s) 122, 139, 235, 238, 256, 286, 404, 511
BspANI GGCC 1 cut(s) 476
BspCNI CTCAG 4 cut(s) 101, 121, 198, 621
BspFNI CGCG 2 cut(s) 122, 139
BspHI TCATGA 1 cut(s) 334
BspLI GGNNCC 1 cut(s) 475
BspPI GGATC 3 cut(s) 101, 156, 512
BsrFI RCCGGY 1 cut(s) 20
BsrGI TGTACA 1 cut(s) 489
BsrI ACTGG 1 cut(s) 506
BssAI RCCGGY 1 cut(s) 20
BssMI GATC 3 cut(s) 93, 148, 504
BstAUI TGTACA 1 cut(s) 489
BstC8I GCNNGC 5 cut(s) 18, 22, 310, 550, 642
BstDEI CTNAG 4 cut(s) 88, 108, 206, 608
BstF5I GGATG 1 cut(s) 45
BstFNI CGCG 2 cut(s) 122, 139
BstH2I RGCGCY 1 cut(s) 275
BstHHI GCGC 2 cut(s) 139, 274
BstKTI GATC 3 cut(s) 96, 151, 507
BstMBI GATC 3 cut(s) 93, 148, 504
BstMWI GCNNNNNNNGC 3 cut(s) 482, 581, 637
BstUI CGCG 2 cut(s) 122, 139
BstV2I GAAGAC 1 cut(s) 352
BstX2I RGATCY 3 cut(s) 93, 148, 504
BstYI RGATCY 3 cut(s) 93, 148, 504
BsuI GTATCC 1 cut(s) 271
BsuRI GGCC 1 cut(s) 476
BtsCI GGATG 1 cut(s) 45
Cac8I GCNNGC 5 cut(s) 18, 22, 310, 550, 642
CciI TCATGA 1 cut(s) 334
CfoI GCGC 2 cut(s) 139, 274
Cfr10I RCCGGY 1 cut(s) 20
Cfr13I GGNCC 2 cut(s) 258, 474
Csp6I GTAC 2 cut(s) 142, 490
CviAII CATG 1 cut(s) 335
CviJI RGCY 9 cut(s) 16, 115, 210, 308, 476, 548, 575, 631, 644
CviKI_1 RGCY 9 cut(s) 16, 115, 210, 308, 476, 548, 575, 631, 644
CviQI GTAC 2 cut(s) 142, 490
DdeI CTNAG 4 cut(s) 88, 108, 206, 608
DpnI GATC 3 cut(s) 95, 150, 506
DpnII GATC 3 cut(s) 93, 148, 504
EciI GGCGGA 1 cut(s) 275
Ecl136II GAGCTC 2 cut(s) 115, 210
Eco24I GRGCYC 2 cut(s) 117, 212
Eco32I GATATC 1 cut(s) 28
Eco47I GGWCC 1 cut(s) 258
Eco53kI GAGCTC 2 cut(s) 115, 210
EcoICRI GAGCTC 2 cut(s) 115, 210
EcoO109I RGGNCCY 1 cut(s) 474
EcoRV GATATC 1 cut(s) 28
EcoT38I GRGCYC 2 cut(s) 117, 212
FaeI CATG 1 cut(s) 338
FaiI YATR 7 cut(s) 233, 336, 379, 459, 494, 554, 582
FatI CATG 1 cut(s) 334
FblI GTMKAC 1 cut(s) 174
Fnu4HI GCNGC 2 cut(s) 236, 239
FokI GGATG 1 cut(s) 32
FriOI GRGCYC 2 cut(s) 117, 212
Fsp4HI GCNGC 2 cut(s) 236, 239
GlaI GCGC 2 cut(s) 138, 273
GluI GCNGC 2 cut(s) 236, 239
HaeII RGCGCY 1 cut(s) 275
HaeIII GGCC 1 cut(s) 476
HapII CCGG 1 cut(s) 21
HhaI GCGC 2 cut(s) 139, 274
Hin1II CATG 1 cut(s) 338
Hin6I GCGC 2 cut(s) 137, 272
HinP1I GCGC 2 cut(s) 137, 272
HindIII AAGCTT 1 cut(s) 629
HinfI GANTC 2 cut(s) 106, 246
HpaII CCGG 1 cut(s) 21
HphI GGTGA 1 cut(s) 22
Hpy166II GTNNAC 4 cut(s) 156, 175, 345, 439
Hpy188I TCNGA 2 cut(s) 207, 570
Hpy188III TCNNGA 5 cut(s) 103, 110, 250, 335, 353
Hpy8I GTNNAC 4 cut(s) 156, 175, 345, 439
HpyAV CCTTC 2 cut(s) 19, 184
HpyCH4IV ACGT 1 cut(s) 281
HpyCH4V TGCA 5 cut(s) 395, 485, 552, 584, 626
HpyF10VI GCNNNNNNNGC 3 cut(s) 482, 581, 637
HpyF3I CTNAG 4 cut(s) 88, 108, 206, 608
HpySE526I ACGT 1 cut(s) 281
Hsp92II CATG 1 cut(s) 338
HspAI GCGC 2 cut(s) 137, 272
KroI GCCGGC 1 cut(s) 20
KroNI GCCGGC 1 cut(s) 22
Kzo9I GATC 3 cut(s) 93, 148, 504
LmnI GCTCC 2 cut(s) 112, 305
LweI GCATC 1 cut(s) 54
MaeII ACGT 1 cut(s) 281
MalI GATC 3 cut(s) 95, 150, 506
MboI GATC 3 cut(s) 93, 148, 504
MboII GAAGA 1 cut(s) 352
MflI RGATCY 3 cut(s) 93, 148, 504
MhlI GDGCHC 2 cut(s) 117, 212
MluCI AATT 4 cut(s) 396, 407, 442, 530
MlyI GAGTC 2 cut(s) 100, 255
MmeI TCCRAC 2 cut(s) 283, 593
MnlI CCTC 6 cut(s) 59, 65, 68, 71, 349, 379
MreI CGCCGGCG 1 cut(s) 20
MroNI GCCGGC 1 cut(s) 20
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 2 cut(s) 633, 646
MspI CCGG 1 cut(s) 21
MvnI CGCG 2 cut(s) 122, 139
MwoI GCNNNNNNNGC 3 cut(s) 482, 581, 637
NaeI GCCGGC 1 cut(s) 22
NdeII GATC 3 cut(s) 93, 148, 504
NgoMIV GCCGGC 1 cut(s) 20
NlaIII CATG 1 cut(s) 338
NlaIV GGNNCC 1 cut(s) 475
PagI TCATGA 1 cut(s) 334
PdiI GCCGGC 1 cut(s) 22
PdmI GAANNNNTTC 1 cut(s) 8
PkrI GCNGC 2 cut(s) 237, 240
PleI GAGTC 2 cut(s) 100, 254
PpsI GAGTC 2 cut(s) 100, 254
Psp124BI GAGCTC 2 cut(s) 117, 212
PspN4I GGNNCC 1 cut(s) 475
PspPI GGNCC 2 cut(s) 258, 474
PsuI RGATCY 3 cut(s) 93, 148, 504
RsaI GTAC 2 cut(s) 143, 491
RsaNI GTAC 2 cut(s) 142, 490
SacI GAGCTC 2 cut(s) 117, 212
SaqAI TTAA 2 cut(s) 633, 646
SatI GCNGC 2 cut(s) 236, 239
Sau3AI GATC 3 cut(s) 93, 148, 504
Sau96I GGNCC 2 cut(s) 258, 474
SchI GAGTC 2 cut(s) 100, 255
SduI GDGCHC 2 cut(s) 117, 212
SfaNI GCATC 1 cut(s) 54
SgrAI CRCCGGYG 1 cut(s) 20
SinI GGWCC 1 cut(s) 258
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
Sse9I AATT 4 cut(s) 396, 407, 442, 530
SsiI CCGC 8 cut(s) 122, 139, 235, 238, 256, 286, 404, 511
SstI GAGCTC 2 cut(s) 117, 212
TaiI ACGT 1 cut(s) 284
TaqI TCGA 1 cut(s) 538
TaqII GACCGA 1 cut(s) 160
TasI AATT 4 cut(s) 396, 407, 442, 530
TatI WGTACW 1 cut(s) 489
TauI GCSGC 2 cut(s) 238, 241
Tru1I TTAA 2 cut(s) 633, 646
Tru9I TTAA 2 cut(s) 633, 646
TspDTI ATGAA 6 cut(s) 17, 28, 154, 190, 203, 323
TspGWI ACGGA 2 cut(s) 172, 173
VpaK11BI GGWCC 1 cut(s) 258
XapI RAATTY 1 cut(s) 530
XmiI GTMKAC 1 cut(s) 174
XmnI GAANNNNTTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.