Rroxscaffold_5G00378730

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
59168484 .. 59169118
635 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00378730.1

Sequence Viewer

Length: 471 bp
ATGGAGATGGTTAAGAAAAGAGAACAAAAGGCAAGTGAATATGAGTGGGGACGAAGAAAGCTTGGGAGTGATTTTCTAGGATTGCTTTTGAAGGCTCATCATGGTGCCGATAAGAAGAACCGGATTTCGATGAACGAATTAGTTGAAGAGTGCAGGACATTTTACTTTGCAGGGCAAGAGACCACTAATACTCTACTTGCTTGGACCGTTGTGCTTCTAGGACAACATCAAGACCGGCAAGAGGAAGCGAGAAAAGAAATGAGCATGATCATCAATGAGACTCTAAGGCTATATCCTCCTGCTAATCCGCCGGCAAGGAGAGTTGCAAGGGAAGTTAGACCGGGAAAACTCCTACTTCCCGCAGATGTTGAATTGCTTGTCCCACCTATAGCACTTCATCATGATCCTCAATTATGGGGACAAGATGCAGCACTTTTTAAACCAGAGCGATTCTCTCGAAGGGGTTGCTAA

Protein Analysis

156

Amino Acids

18.03

Weight (kDa)

9.2

Isoelectric Point (pI)

48.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 3 - 153 2.8e-22 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000078)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g15240 FvH4_3g15270 FvH4_3g15280 FvH4_3g32750 FvH4_3g32760 FvH4_3g32760 FvH4_3g32880 FvH4_4g08190 FvH4_4g29160 FvH4_4g29370 FvH4_4g29400 FvH4_4g29420 FvH4_4g29420 FvH4_4g29420 FvH4_4g29430 FvH4_4g29440 FvH4_4g29450 FvH4_4g29450 FvH4_4g29450 FvH4_4g29460 FvH4_4g29461 FvH4_4g29462 FvH4_4g29463 FvH4_4g29480 FvH4_4g29481 FvH4_4g29482 FvH4_4g29483 FvH4_4g29484 FvH4_6g26720 FvH4_6g26720
malus_domestica MD00G1065200.v1.1 MD06G1145800.v1.1 MD06G1146000.v1.1 MD06G1146700.v1.1 MD13G1031000.v1.1 MD13G1033900.v1.1 MD13G1057000.v1.1 MD13G1057100.v1.1 MD13G1057200.v1.1 MD13G1057400.v1.1 MD13G1057800.v1.1 MD13G1058000.v1.1 MD13G1058100.v1.1 MD13G1058200.v1.1 MD13G1058300.v1.1 MD13G1058500.v1.1 MD13G1058600.v1.1 MD13G1058700.v1.1 MD16G1035700.v1.1 MD16G1056400.v1.1 MD16G1056600.v1.1 MD16G1056700.v1.1 MD16G1056900.v1.1 MD16G1058100.v1.1
prunus_persica Prupe.1G291100_v2.0.a1 Prupe.1G291200_v2.0.a1 Prupe.1G291500_v2.0.a1 Prupe.1G291600_v2.0.a1 Prupe.1G291700_v2.0.a1 Prupe.1G291800_v2.0.a1 Prupe.1G291900_v2.0.a1 Prupe.1G292000_v2.0.a1 Prupe.1G292100_v2.0.a1 Prupe.1G292400_v2.0.a1 Prupe.1G292500_v2.0.a1 Prupe.1G292600_v2.0.a1 Prupe.1G292700_v2.0.a1 Prupe.1G292800_v2.0.a1 Prupe.1G296000_v2.0.a1 Prupe.1G296100_v2.0.a1 Prupe.1G296300_v2.0.a1 Prupe.1G296600_v2.0.a1 Prupe.1G296900_v2.0.a1 Prupe.1G534600_v2.0.a1 Prupe.5G046700_v2.0.a1 Prupe.8G021800_v2.0.a1 Prupe.8G026400_v2.0.a1
pyrus_communis pycom06g13510 pycom06g13530 pycom06g13540 pycom06g13570 pycom06g13590 pycom06g13620 pycom13g02710 pycom13g02930 pycom13g05100 pycom13g05110 pycom13g05140 pycom13g05160 pycom13g05170 pycom13g05190 pycom13g05200 pycom13g05210 pycom13g05220 pycom16g03060 pycom16g04940 pycom16g04960 pycom16g04990 pycom16g05000 pycom16g05080
rosa_chinensis RchiOBHm_Chr1g0337981 RchiOBHm_Chr1g0337991 RchiOBHm_Chr1g0339431 RchiOBHm_Chr4g0402401 RchiOBHm_Chr4g0420571 RchiOBHm_Chr4g0420601 RchiOBHm_Chr4g0420611 RchiOBHm_Chr4g0420621 RchiOBHm_Chr4g0420631 RchiOBHm_Chr4g0437211 RchiOBHm_Chr4g0437221 RchiOBHm_Chr4g0437251 RchiOBHm_Chr4g0437431 RchiOBHm_Chr4g0437441 RchiOBHm_Chr4g0437491 RchiOBHm_Chr4g0437501 RchiOBHm_Chr4g0437511 RchiOBHm_Chr4g0437521 RchiOBHm_Chr4g0437531 RchiOBHm_Chr4g0437541 RchiOBHm_Chr4g0437551 RchiOBHm_Chr4g0437591 RchiOBHm_Chr4g0437631 RchiOBHm_Chr4g0437641 RchiOBHm_Chr4g0437671 RchiOBHm_Chr4g0437681 RchiOBHm_Chr4g0437711 RchiOBHm_Chr4g0437731 RchiOBHm_Chr4g0437741 RchiOBHm_Chr4g0437751 RchiOBHm_Chr5g0025681 RchiOBHm_Chr5g0025711 RchiOBHm_Chr5g0025731 RchiOBHm_Chr5g0059841 RchiOBHm_Chr6g0272651
rosa_laevigata RLG00000006420 RLG00000006421 RLG00000006423 RLG00000006426 RLG00000006427 RLG00000006428 RLG00000006429 RLG00000006431 RLG00000006433 RLG00000006434 RLG00000006435 RLG00000006436 RLG00000006437 RLG00000006455 RLG00000007746 RLG00000007747 RLG00000007748 RLG00000007749 RLG00000007750 RLG00000009091 RLG00000009092 RLG00000009095 RLG00000009096 RLG00000017856 RLG00000028094 RLG00000029230 RLG00000029231 RLG00000030008 RLG00000032859 RLG00000032860 RLG00000032861 RLG00000032865 RLG00000032868 RLG00000035332
rosa_multiflora Rmu_co7986016.1_g000001 Rmu_co8226539.1_g000001 Rmu_co8349613.1_g000001 Rmu_sc0000272.1_g000014 Rmu_sc0000591.1_g000003 Rmu_sc0000613.1_g000013 Rmu_sc0001629.1_g000022 Rmu_sc0001629.1_g000025 Rmu_sc0002131.1_g000027 Rmu_sc0002137.1_g000006 Rmu_sc0002137.1_g000014 Rmu_sc0002137.1_g000019 Rmu_sc0002472.1_g000002 Rmu_sc0002472.1_g000012 Rmu_sc0002472.1_g000018 Rmu_sc0002472.1_g000034 Rmu_sc0002472.1_g000040 Rmu_sc0002472.1_g000051 Rmu_sc0002638.1_g000005 Rmu_sc0002638.1_g000010 Rmu_sc0002638.1_g000025 Rmu_sc0002638.1_g000030 Rmu_sc0002638.1_g000037 Rmu_sc0002638.1_g000042 Rmu_sc0004339.1_g000019 Rmu_sc0005580.1_g000013 Rmu_sc0006617.1_g000002 Rmu_sc0006986.1_g000003 Rmu_sc0006986.1_g000017 Rmu_sc0008352.1_g000001 Rmu_sc0008352.1_g000002 Rmu_sc0009431.1_g000011 Rmu_sc0011080.1_g000003 Rmu_sc0011080.1_g000006 Rmu_sc0016549.1_g000001 Rmu_sc0016549.1_g000002 Rmu_sc0017154.1_g000001 Rmu_sc0017155.1_g000001 Rmu_sc0028438.1_g000001 Rmu_sc0041413.1_g000001 Rmu_ssc0000330.1_g000022
rosa_roxburghii Rroxscaffold_1G00020750 Rroxscaffold_1G00053460 Rroxscaffold_1G00054250 Rroxscaffold_1G00054260 Rroxscaffold_1G00054270 Rroxscaffold_1G00054290 Rroxscaffold_2G00120210 Rroxscaffold_4G00313460 Rroxscaffold_4G00313470 Rroxscaffold_4G00330630 Rroxscaffold_5G00347070 Rroxscaffold_5G00347110 Rroxscaffold_5G00378670 Rroxscaffold_5G00378690 Rroxscaffold_5G00378720 Rroxscaffold_5G00378730 Rroxscaffold_5G00378740 Rroxscaffold_5G00378760 Rroxscaffold_5G00378780 Rroxscaffold_5G00378790 Rroxscaffold_5G00378800 Rroxscaffold_5G00378810 Rroxscaffold_5G00378820 Rroxscaffold_5G00378840 Rroxscaffold_5G00378860 Rroxscaffold_5G00378870 Rroxscaffold_7G00196060
rosa_rugosa Rorug01G0142200.1 Rorug01G0332800 Rorug02G0012200 Rorug02G0248300 Rorug03G0219000 Rorug03G0219100 Rorug03G0219200 Rorug04G0035100 Rorug04G0301500 Rorug04G0301500 Rorug04G0301700 Rorug04G0301800 Rorug04G0301800 Rorug04G0301900 Rorug04G0302000 Rorug04G0302500 Rorug04G0302600 Rorug04G0302700 Rorug04G0302800 Rorug04G0302900 Rorug04G0303000 Rorug04G0303000 Rorug04G0303100 Rorug04G0303200 Rorug04G0303300 Rorug04G0303400 Rorug04G0303500 Rorug04G0303500 Rorug05G0087800 Rorug05G0088200 Rorug05G0326300 Rorug06G0173000
rosa_samantha Rh2AG222400 Rh4DG224800 Rh4DG359900 Rh4DG360000 Rh4DG360100 Rh4DG360200 Rh4DG360300 Rh4DG360500 Rh4DG360700 Rh4DG360800 Rh4DG360900 Rh4DG361000 Rh5DG177900 Rh5DG178200 Rh5DG178400 Rh6CG187800
rosa_wichuraiana Rw1G013580 Rw4G009020 Rw4G019580 Rw4G030990 Rw4G031000 Rw4G031220 Rw4G031230 Rw4G031240 Rw4G031250 Rw4G031260 Rw4G031270 Rw4G031280 Rw4G031290 Rw4G031310 Rw4G031320 Rw4G031330 Rw4G031340 Rw4G031360 Rw4G031370 Rw5G016310 Rw5G016320 Rw5G016330 Rw5G036760 Rw6G016090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 104
AciI CCGC 2 cut(s) 308, 360
AclWI GGATC 1 cut(s) 398
AfiI CCNNNNNNNGG 1 cut(s) 241
AgsI TTSAA 3 cut(s) 91, 146, 371
AluBI AGCT 1 cut(s) 61
AluI AGCT 1 cut(s) 61
Alw26I GTCTC 2 cut(s) 173, 272
AlwI GGATC 1 cut(s) 398
ApeKI GCWGC 1 cut(s) 428
AspS9I GGNCC 1 cut(s) 204
AsuC2I CCSGG 1 cut(s) 342
AvaII GGWCC 1 cut(s) 204
BanI GGYRCC 1 cut(s) 104
BbvI GCAGC 1 cut(s) 440
BcgI CGANNNNNNTGC 1 cut(s) 447
BclI TGATCA 1 cut(s) 267
BcnI CCSGG 1 cut(s) 342
BcoDI GTCTC 2 cut(s) 173, 272
BfaI CTAG 2 cut(s) 77, 218
BfmI CTRYAG 1 cut(s) 387
BisI GCNGC 1 cut(s) 429
BlsI GCNGC 1 cut(s) 430
Bme1390I CCNGG 1 cut(s) 342
Bme18I GGWCC 1 cut(s) 204
BmgT120I GGNCC 1 cut(s) 204
BmiI GGNNCC 1 cut(s) 106
BmrFI CCNGG 1 cut(s) 342
BmsI GCATC 1 cut(s) 415
BplI GAGNNNNNCTC 2 cut(s) 437, 469
BpuMI CCSGG 1 cut(s) 342
BsaI GGTCTC 1 cut(s) 173
BsaWI WCCGGW 1 cut(s) 120
Bsc4I CCNNNNNNNGG 1 cut(s) 241
Bse118I RCCGGY 2 cut(s) 234, 310
BseLI CCNNNNNNNGG 1 cut(s) 241
BseXI GCAGC 1 cut(s) 440
BsgI GTGCAG 1 cut(s) 172
BshNI GGYRCC 1 cut(s) 104
BsiSI CCGG 4 cut(s) 121, 235, 311, 341
BslFI GGGAC 3 cut(s) 63, 365, 432
BslI CCNNNNNNNGG 1 cut(s) 241
BsmAI GTCTC 2 cut(s) 173, 272
BsmFI GGGAC 3 cut(s) 63, 365, 432
Bso31I GGTCTC 1 cut(s) 173
Bsp143I GATC 2 cut(s) 267, 403
BspACI CCGC 2 cut(s) 308, 360
BspHI TCATGA 1 cut(s) 400
BspLI GGNNCC 1 cut(s) 106
BspPI GGATC 1 cut(s) 398
BspT107I GGYRCC 1 cut(s) 104
BspTNI GGTCTC 1 cut(s) 173
BsrFI RCCGGY 2 cut(s) 234, 310
BssAI RCCGGY 2 cut(s) 234, 310
BssMI GATC 2 cut(s) 267, 403
Bst4CI ACNGT 1 cut(s) 208
Bst6I CTCTTC 1 cut(s) 141
BstC8I GCNNGC 1 cut(s) 312
BstDEI CTNAG 1 cut(s) 284
BstKTI GATC 2 cut(s) 270, 406
BstMAI GTCTC 2 cut(s) 173, 272
BstMBI GATC 2 cut(s) 267, 403
BstSCI CCNGG 1 cut(s) 340
BstSFI CTRYAG 1 cut(s) 387
BstV1I GCAGC 1 cut(s) 440
Cac8I GCNNGC 1 cut(s) 312
CciI TCATGA 1 cut(s) 400
Cfr10I RCCGGY 2 cut(s) 234, 310
Cfr13I GGNCC 1 cut(s) 204
CviAII CATG 3 cut(s) 101, 265, 401
CviJI RGCY 3 cut(s) 61, 95, 289
CviKI_1 RGCY 3 cut(s) 61, 95, 289
DdeI CTNAG 1 cut(s) 284
DpnI GATC 2 cut(s) 269, 405
DpnII GATC 2 cut(s) 267, 403
DraI TTTAAA 1 cut(s) 439
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
EciI GGCGGA 1 cut(s) 297
Eco31I GGTCTC 1 cut(s) 173
Eco47I GGWCC 1 cut(s) 204
FaeI CATG 3 cut(s) 104, 268, 404
FaiI YATR 7 cut(s) 42, 102, 266, 292, 389, 402, 415
FaqI GGGAC 3 cut(s) 63, 365, 432
FatI CATG 3 cut(s) 100, 264, 400
FauI CCCGC 1 cut(s) 367
FbaI TGATCA 1 cut(s) 267
Fnu4HI GCNGC 1 cut(s) 429
Fsp4HI GCNGC 1 cut(s) 429
FspBI CTAG 2 cut(s) 77, 218
GluI GCNGC 1 cut(s) 429
HapII CCGG 4 cut(s) 121, 235, 311, 341
Hin1II CATG 3 cut(s) 104, 268, 404
HindIII AAGCTT 1 cut(s) 59
HinfI GANTC 2 cut(s) 280, 450
HpaII CCGG 4 cut(s) 121, 235, 311, 341
Hpy188III TCNNGA 3 cut(s) 230, 401, 456
HpyAV CCTTC 2 cut(s) 85, 453
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4V TGCA 4 cut(s) 153, 170, 326, 428
HpyF3I CTNAG 1 cut(s) 284
Hsp92II CATG 3 cut(s) 104, 268, 404
KroI GCCGGC 1 cut(s) 310
KroNI GCCGGC 1 cut(s) 312
Ksp22I TGATCA 1 cut(s) 267
Kzo9I GATC 2 cut(s) 267, 403
LpnPI CCDG 8 cut(s) 134, 139, 156, 248, 312, 324, 354, 456
Lsp1109I GCAGC 1 cut(s) 440
LweI GCATC 1 cut(s) 415
MaeI CTAG 2 cut(s) 77, 218
MalI GATC 2 cut(s) 269, 405
MboI GATC 2 cut(s) 267, 403
MboII GAAGA 3 cut(s) 66, 127, 158
MluCI AATT 3 cut(s) 137, 371, 410
MlyI GAGTC 1 cut(s) 274
MnlI CCTC 3 cut(s) 235, 306, 417
MroNI GCCGGC 1 cut(s) 310
MseI TTAA 2 cut(s) 12, 438
MslI CAYNNNNRTG 1 cut(s) 102
MspI CCGG 4 cut(s) 121, 235, 311, 341
MspR9I CCNGG 1 cut(s) 342
NaeI GCCGGC 1 cut(s) 312
NciI CCSGG 1 cut(s) 342
NdeII GATC 2 cut(s) 267, 403
NgoMIV GCCGGC 1 cut(s) 310
NlaIII CATG 3 cut(s) 104, 268, 404
NlaIV GGNNCC 1 cut(s) 106
PagI TCATGA 1 cut(s) 400
PdiI GCCGGC 1 cut(s) 312
PfeI GAWTC 1 cut(s) 450
PkrI GCNGC 1 cut(s) 430
PleI GAGTC 1 cut(s) 274
PpsI GAGTC 1 cut(s) 274
PspN4I GGNNCC 1 cut(s) 106
PspPI GGNCC 1 cut(s) 204
RseI CAYNNNNRTG 1 cut(s) 102
SaqAI TTAA 2 cut(s) 12, 438
SatI GCNGC 1 cut(s) 429
Sau3AI GATC 2 cut(s) 267, 403
Sau96I GGNCC 1 cut(s) 204
SchI GAGTC 1 cut(s) 274
ScrFI CCNGG 1 cut(s) 342
SetI ASST 2 cut(s) 63, 388
SfaNI GCATC 1 cut(s) 415
SfcI CTRYAG 1 cut(s) 387
SinI GGWCC 1 cut(s) 204
SmiMI CAYNNNNRTG 1 cut(s) 102
Sse9I AATT 3 cut(s) 137, 371, 410
SsiI CCGC 2 cut(s) 308, 360
SspMI CTAG 2 cut(s) 77, 218
StyD4I CCNGG 1 cut(s) 340
TaaI ACNGT 1 cut(s) 208
TaqI TCGA 2 cut(s) 128, 457
TasI AATT 3 cut(s) 137, 371, 410
TfiI GAWTC 1 cut(s) 450
Tru1I TTAA 2 cut(s) 12, 438
Tru9I TTAA 2 cut(s) 12, 438
TseI GCWGC 1 cut(s) 428
TspDTI ATGAA 2 cut(s) 146, 386
VpaK11BI GGWCC 1 cut(s) 204
XspI CTAG 2 cut(s) 77, 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.