Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000078

Physical Location & Seq

Genomic Coordinates Forward (+)

28076128 .. 28078319

Gene Structure 2192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g32760.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGAAGCAATCCTTGGAGAAGACAAGAGTATTGGGAATGATTTTCTAGGATTGCTTTTAGAGGCTCATCATGGTTCTAATGTCAAACAGCGGATTTCGATTGATGAGTTGGTTGAGGAATGCAGGACATTTTACTTTGCTGGACAAGAGACTACTAATTCTGTACTTTCTTGGATTATCCTACTTCTGGCACAACACCCCTATTGGCAAGAGGAAGCAAGAAAAGAGGTGCTGCAGTTGTTTGGCAAACAGACACCAAACTACGATGGCCTTGCCAAACTCAAAACAATGAGTATGATCATGAATGAGACGCCAAGGTTATATCCACCTGCTGTTTTGATTGTAAGGAAAGTTGCAAGGGAAGTTAGACTGGGAAATCTCCTACTTCCTGCTAATATGGAGTTGCTTGTGCCACCTCTGGCACTTCACCATGAAGCTCAGTTCTGGGGACAAGATGCCGGTTTGTTCAAACCAGATCGATTCTCGGAAGGGGTTGGGAAAGCCACCAACGATAACATGGCTGCGTTCATGCCCTTTGGAATGGGACCTAGAATGTGTGTGGGATTCAACTTTGCAACCACTGAAATAAAGATTGCTCTGTCAATGATTCTGCAACGCTACTCATTTACACTGTCTCCGGGTTATGTCCACTCGCCTTTTCAGTTTATGACCCTTCGGCCACAACACGGAGTTCAAATAATACTACAGTCACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0008395 GO:0009719 GO:0009725 GO:0009741 GO:0010033 GO:0010268 GO:0010817 GO:0014070 GO:0016128 GO:0016131 GO:0016491 GO:0033993 GO:0042221 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00905 map00905

Pfam Domains

Protein Families

p450

Protein Analysis

239

Amino Acids

26.87

Weight (kDa)

6.38

Isoelectric Point (pI)

38.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	7 - 219	9.3e-55	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000078)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g15240 FvH4_3g15270 FvH4_3g15280 FvH4_3g32750 FvH4_3g32760 FvH4_3g32760 FvH4_3g32880 FvH4_4g08190 FvH4_4g29160 FvH4_4g29370 FvH4_4g29400 FvH4_4g29420 FvH4_4g29420 FvH4_4g29420 FvH4_4g29430 FvH4_4g29440 FvH4_4g29450 FvH4_4g29450 FvH4_4g29450 FvH4_4g29460 FvH4_4g29461 FvH4_4g29462 FvH4_4g29463 FvH4_4g29480 FvH4_4g29481 FvH4_4g29482 FvH4_4g29483 FvH4_4g29484 FvH4_6g26720 FvH4_6g26720
malus_domestica	MD00G1065200.v1.1 MD06G1145800.v1.1 MD06G1146000.v1.1 MD06G1146700.v1.1 MD13G1031000.v1.1 MD13G1033900.v1.1 MD13G1057000.v1.1 MD13G1057100.v1.1 MD13G1057200.v1.1 MD13G1057400.v1.1 MD13G1057800.v1.1 MD13G1058000.v1.1 MD13G1058100.v1.1 MD13G1058200.v1.1 MD13G1058300.v1.1 MD13G1058500.v1.1 MD13G1058600.v1.1 MD13G1058700.v1.1 MD16G1035700.v1.1 MD16G1056400.v1.1 MD16G1056600.v1.1 MD16G1056700.v1.1 MD16G1056900.v1.1 MD16G1058100.v1.1
prunus_persica	Prupe.1G291100_v2.0.a1 Prupe.1G291200_v2.0.a1 Prupe.1G291500_v2.0.a1 Prupe.1G291600_v2.0.a1 Prupe.1G291700_v2.0.a1 Prupe.1G291800_v2.0.a1 Prupe.1G291900_v2.0.a1 Prupe.1G292000_v2.0.a1 Prupe.1G292100_v2.0.a1 Prupe.1G292400_v2.0.a1 Prupe.1G292500_v2.0.a1 Prupe.1G292600_v2.0.a1 Prupe.1G292700_v2.0.a1 Prupe.1G292800_v2.0.a1 Prupe.1G296000_v2.0.a1 Prupe.1G296100_v2.0.a1 Prupe.1G296300_v2.0.a1 Prupe.1G296600_v2.0.a1 Prupe.1G296900_v2.0.a1 Prupe.1G534600_v2.0.a1 Prupe.5G046700_v2.0.a1 Prupe.8G021800_v2.0.a1 Prupe.8G026400_v2.0.a1
pyrus_communis	pycom06g13510 pycom06g13530 pycom06g13540 pycom06g13570 pycom06g13590 pycom06g13620 pycom13g02710 pycom13g02930 pycom13g05100 pycom13g05110 pycom13g05140 pycom13g05160 pycom13g05170 pycom13g05190 pycom13g05200 pycom13g05210 pycom13g05220 pycom16g03060 pycom16g04940 pycom16g04960 pycom16g04990 pycom16g05000 pycom16g05080
rosa_chinensis	RchiOBHm_Chr1g0337981 RchiOBHm_Chr1g0337991 RchiOBHm_Chr1g0339431 RchiOBHm_Chr4g0402401 RchiOBHm_Chr4g0420571 RchiOBHm_Chr4g0420601 RchiOBHm_Chr4g0420611 RchiOBHm_Chr4g0420621 RchiOBHm_Chr4g0420631 RchiOBHm_Chr4g0437211 RchiOBHm_Chr4g0437221 RchiOBHm_Chr4g0437251 RchiOBHm_Chr4g0437431 RchiOBHm_Chr4g0437441 RchiOBHm_Chr4g0437491 RchiOBHm_Chr4g0437501 RchiOBHm_Chr4g0437511 RchiOBHm_Chr4g0437521 RchiOBHm_Chr4g0437531 RchiOBHm_Chr4g0437541 RchiOBHm_Chr4g0437551 RchiOBHm_Chr4g0437591 RchiOBHm_Chr4g0437631 RchiOBHm_Chr4g0437641 RchiOBHm_Chr4g0437671 RchiOBHm_Chr4g0437681 RchiOBHm_Chr4g0437711 RchiOBHm_Chr4g0437731 RchiOBHm_Chr4g0437741 RchiOBHm_Chr4g0437751 RchiOBHm_Chr5g0025681 RchiOBHm_Chr5g0025711 RchiOBHm_Chr5g0025731 RchiOBHm_Chr5g0059841 RchiOBHm_Chr6g0272651
rosa_laevigata	RLG00000006420 RLG00000006421 RLG00000006423 RLG00000006426 RLG00000006427 RLG00000006428 RLG00000006429 RLG00000006431 RLG00000006433 RLG00000006434 RLG00000006435 RLG00000006436 RLG00000006437 RLG00000006455 RLG00000007746 RLG00000007747 RLG00000007748 RLG00000007749 RLG00000007750 RLG00000009091 RLG00000009092 RLG00000009095 RLG00000009096 RLG00000017856 RLG00000028094 RLG00000029230 RLG00000029231 RLG00000030008 RLG00000032859 RLG00000032860 RLG00000032861 RLG00000032865 RLG00000032868 RLG00000035332
rosa_multiflora	Rmu_co7986016.1_g000001 Rmu_co8226539.1_g000001 Rmu_co8349613.1_g000001 Rmu_sc0000272.1_g000014 Rmu_sc0000591.1_g000003 Rmu_sc0000613.1_g000013 Rmu_sc0001629.1_g000022 Rmu_sc0001629.1_g000025 Rmu_sc0002131.1_g000027 Rmu_sc0002137.1_g000006 Rmu_sc0002137.1_g000014 Rmu_sc0002137.1_g000019 Rmu_sc0002472.1_g000002 Rmu_sc0002472.1_g000012 Rmu_sc0002472.1_g000018 Rmu_sc0002472.1_g000034 Rmu_sc0002472.1_g000040 Rmu_sc0002472.1_g000051 Rmu_sc0002638.1_g000005 Rmu_sc0002638.1_g000010 Rmu_sc0002638.1_g000025 Rmu_sc0002638.1_g000030 Rmu_sc0002638.1_g000037 Rmu_sc0002638.1_g000042 Rmu_sc0004339.1_g000019 Rmu_sc0005580.1_g000013 Rmu_sc0006617.1_g000002 Rmu_sc0006986.1_g000003 Rmu_sc0006986.1_g000017 Rmu_sc0008352.1_g000001 Rmu_sc0008352.1_g000002 Rmu_sc0009431.1_g000011 Rmu_sc0011080.1_g000003 Rmu_sc0011080.1_g000006 Rmu_sc0016549.1_g000001 Rmu_sc0016549.1_g000002 Rmu_sc0017154.1_g000001 Rmu_sc0017155.1_g000001 Rmu_sc0028438.1_g000001 Rmu_sc0041413.1_g000001 Rmu_ssc0000330.1_g000022
rosa_roxburghii	Rroxscaffold_1G00020750 Rroxscaffold_1G00053460 Rroxscaffold_1G00054250 Rroxscaffold_1G00054260 Rroxscaffold_1G00054270 Rroxscaffold_1G00054290 Rroxscaffold_2G00120210 Rroxscaffold_4G00313460 Rroxscaffold_4G00313470 Rroxscaffold_4G00330630 Rroxscaffold_5G00347070 Rroxscaffold_5G00347110 Rroxscaffold_5G00378670 Rroxscaffold_5G00378690 Rroxscaffold_5G00378720 Rroxscaffold_5G00378730 Rroxscaffold_5G00378740 Rroxscaffold_5G00378760 Rroxscaffold_5G00378780 Rroxscaffold_5G00378790 Rroxscaffold_5G00378800 Rroxscaffold_5G00378810 Rroxscaffold_5G00378820 Rroxscaffold_5G00378840 Rroxscaffold_5G00378860 Rroxscaffold_5G00378870 Rroxscaffold_7G00196060
rosa_rugosa	Rorug01G0142200.1 Rorug01G0332800 Rorug02G0012200 Rorug02G0248300 Rorug03G0219000 Rorug03G0219100 Rorug03G0219200 Rorug04G0035100 Rorug04G0301500 Rorug04G0301500 Rorug04G0301700 Rorug04G0301800 Rorug04G0301800 Rorug04G0301900 Rorug04G0302000 Rorug04G0302500 Rorug04G0302600 Rorug04G0302700 Rorug04G0302800 Rorug04G0302900 Rorug04G0303000 Rorug04G0303000 Rorug04G0303100 Rorug04G0303200 Rorug04G0303300 Rorug04G0303400 Rorug04G0303500 Rorug04G0303500 Rorug05G0087800 Rorug05G0088200 Rorug05G0326300 Rorug06G0173000
rosa_samantha	Rh2AG222400 Rh4DG224800 Rh4DG359900 Rh4DG360000 Rh4DG360100 Rh4DG360200 Rh4DG360300 Rh4DG360500 Rh4DG360700 Rh4DG360800 Rh4DG360900 Rh4DG361000 Rh5DG177900 Rh5DG178200 Rh5DG178400 Rh6CG187800
rosa_wichuraiana	Rw1G013580 Rw4G009020 Rw4G019580 Rw4G030990 Rw4G031000 Rw4G031220 Rw4G031230 Rw4G031240 Rw4G031250 Rw4G031260 Rw4G031270 Rw4G031280 Rw4G031290 Rw4G031310 Rw4G031320 Rw4G031330 Rw4G031340 Rw4G031360 Rw4G031370 Rw5G016310 Rw5G016320 Rw5G016330 Rw5G036760 Rw6G016090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	337
Acc36I	ACCTGC	1 cut(s)	337
AciI	CCGC	1 cut(s)	91
AcoI	YGGCCR	1 cut(s)	677
AcyI	GRCGYC	1 cut(s)	311
AfaI	GTAC	1 cut(s)	165
AfiI	CCNNNNNNNGG	2 cut(s)	187, 686
AgsI	TTSAA	3 cut(s)	469, 568, 695
AjuI	GAANNNNNNNTTGG	1 cut(s)	29
AluBI	AGCT	1 cut(s)	437
AluI	AGCT	1 cut(s)	437
Alw26I	GTCTC	3 cut(s)	143, 302, 639
AoxI	GGCC	2 cut(s)	268, 677
ApeKI	GCWGC	2 cut(s)	232, 521
AspS9I	GGNCC	1 cut(s)	545
AsuC2I	CCSGG	1 cut(s)	639
AsuHPI	GGTGA	1 cut(s)	419
AvaII	GGWCC	1 cut(s)	545
BbsI	GAAGAC	1 cut(s)	27
BbvI	GCAGC	2 cut(s)	219, 508
BccI	CCATC	1 cut(s)	260
BcgI	CGANNNNNNTGC	2 cut(s)	254, 288
BclI	TGATCA	1 cut(s)	297
BcnI	CCSGG	1 cut(s)	639
BcoDI	GTCTC	3 cut(s)	143, 302, 639
BfaI	CTAG	2 cut(s)	47, 549
BfmI	CTRYAG	2 cut(s)	233, 704
BfuAI	ACCTGC	1 cut(s)	337
BisI	GCNGC	2 cut(s)	233, 522
BlsI	GCNGC	2 cut(s)	234, 523
Bme1390I	CCNGG	1 cut(s)	639
Bme18I	GGWCC	1 cut(s)	545
BmgT120I	GGNCC	1 cut(s)	545
BmiI	GGNNCC	1 cut(s)	546
BmrFI	CCNGG	1 cut(s)	639
BmrI	ACTGGG	1 cut(s)	380
BmsI	GCATC	1 cut(s)	445
BmuI	ACTGGG	1 cut(s)	380
BpiI	GAAGAC	1 cut(s)	27
BpuMI	CCSGG	1 cut(s)	639
Bsa29I	ATCGAT	1 cut(s)	478
BsaHI	GRCGYC	1 cut(s)	311
BsaJI	CCNNGG	2 cut(s)	13, 314
BsaXI	ACNNNNNCTCC	2 cut(s)	619, 649
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 686
Bse118I	RCCGGY	1 cut(s)	458
Bse1I	ACTGG	1 cut(s)	375
BseCI	ATCGAT	1 cut(s)	478
BseDI	CCNNGG	2 cut(s)	13, 314
BseLI	CCNNNNNNNGG	2 cut(s)	187, 686
BseMII	CTCAG	1 cut(s)	452
BseNI	ACTGG	1 cut(s)	375
BseXI	GCAGC	2 cut(s)	219, 508
BshFI	GGCC	2 cut(s)	270, 679
BshVI	ATCGAT	1 cut(s)	478
BsiSI	CCGG	2 cut(s)	459, 638
BslFI	GGGAC	2 cut(s)	462, 558
BslI	CCNNNNNNNGG	2 cut(s)	187, 686
BsmAI	GTCTC	3 cut(s)	143, 302, 639
BsmBI	CGTCTC	1 cut(s)	302
BsmFI	GGGAC	2 cut(s)	462, 558
BsmI	GAATGC	1 cut(s)	125
BsnI	GGCC	2 cut(s)	270, 679
Bsp143I	GATC	2 cut(s)	297, 475
BspACI	CCGC	1 cut(s)	91
BspANI	GGCC	2 cut(s)	270, 679
BspCNI	CTCAG	1 cut(s)	451
BspDI	ATCGAT	1 cut(s)	478
BspHI	TCATGA	1 cut(s)	300
BspLI	GGNNCC	1 cut(s)	546
BspMAI	CTGCAG	1 cut(s)	237
BspMI	ACCTGC	1 cut(s)	337
BsrFI	RCCGGY	1 cut(s)	458
BsrI	ACTGG	1 cut(s)	375
BssAI	RCCGGY	1 cut(s)	458
BssECI	CCNNGG	2 cut(s)	13, 314
BssMI	GATC	2 cut(s)	297, 475
BssNI	GRCGYC	1 cut(s)	311
BssT1I	CCWWGG	2 cut(s)	13, 314
Bst4CI	ACNGT	2 cut(s)	633, 708
BstACI	GRCGYC	1 cut(s)	311
BstDEI	CTNAG	1 cut(s)	438
BstKTI	GATC	2 cut(s)	300, 478
BstMAI	GTCTC	3 cut(s)	143, 302, 639
BstMBI	GATC	2 cut(s)	297, 475
BstSCI	CCNGG	1 cut(s)	637
BstSFI	CTRYAG	2 cut(s)	233, 704
BstV1I	GCAGC	2 cut(s)	219, 508
BstV2I	GAAGAC	1 cut(s)	27
Bsu15I	ATCGAT	1 cut(s)	478
BsuRI	GGCC	2 cut(s)	270, 679
BsuTUI	ATCGAT	1 cut(s)	478
BtsIMutI	CAGTG	2 cut(s)	579, 629
BveI	ACCTGC	1 cut(s)	337
CciI	TCATGA	1 cut(s)	300
Cfr10I	RCCGGY	1 cut(s)	458
Cfr13I	GGNCC	1 cut(s)	545
ClaI	ATCGAT	1 cut(s)	478
CseI	GACGC	1 cut(s)	319
Csp6I	GTAC	1 cut(s)	164
CviAII	CATG	5 cut(s)	71, 301, 431, 517, 529
CviJI	RGCY	6 cut(s)	65, 270, 437, 503, 521, 679
CviKI_1	RGCY	6 cut(s)	65, 270, 437, 503, 521, 679
CviQI	GTAC	1 cut(s)	164
DdeI	CTNAG	1 cut(s)	438
DpnI	GATC	2 cut(s)	299, 477
DpnII	GATC	2 cut(s)	297, 475
EaeI	YGGCCR	1 cut(s)	677
Eco130I	CCWWGG	2 cut(s)	13, 314
Eco47I	GGWCC	1 cut(s)	545
EcoO109I	RGGNCCY	1 cut(s)	545
EcoT14I	CCWWGG	2 cut(s)	13, 314
ErhI	CCWWGG	2 cut(s)	13, 314
Esp3I	CGTCTC	1 cut(s)	302
FaeI	CATG	5 cut(s)	74, 304, 434, 520, 532
FalI	AAGNNNNNCTT	1 cut(s)	29
FaqI	GGGAC	2 cut(s)	462, 558
FatI	CATG	5 cut(s)	70, 300, 430, 516, 528
FbaI	TGATCA	1 cut(s)	297
Fnu4HI	GCNGC	2 cut(s)	233, 522
Fsp4HI	GCNGC	2 cut(s)	233, 522
FspBI	CTAG	2 cut(s)	47, 549
GluI	GCNGC	2 cut(s)	233, 522
HaeIII	GGCC	2 cut(s)	270, 679
HapII	CCGG	2 cut(s)	459, 638
HgaI	GACGC	1 cut(s)	319
Hin1I	GRCGYC	1 cut(s)	311
Hin1II	CATG	5 cut(s)	74, 304, 434, 520, 532
HinfI	GANTC	3 cut(s)	480, 564, 607
HpaII	CCGG	2 cut(s)	459, 638
HphI	GGTGA	1 cut(s)	419
Hpy166II	GTNNAC	1 cut(s)	649
Hpy188I	TCNGA	2 cut(s)	487, 716
Hpy188III	TCNNGA	1 cut(s)	301
Hpy8I	GTNNAC	1 cut(s)	649
HpyAV	CCTTC	2 cut(s)	482, 683
HpyCH4III	ACNGT	2 cut(s)	633, 708
HpyCH4V	TGCA	5 cut(s)	123, 235, 356, 575, 613
HpyF3I	CTNAG	1 cut(s)	438
Hsp92I	GRCGYC	1 cut(s)	311
Hsp92II	CATG	5 cut(s)	74, 304, 434, 520, 532
Ksp22I	TGATCA	1 cut(s)	297
Kzo9I	GATC	2 cut(s)	297, 475
Lsp1109I	GCAGC	2 cut(s)	219, 508
LweI	GCATC	1 cut(s)	445
MaeI	CTAG	2 cut(s)	47, 549
MaeIII	GTNAC	1 cut(s)	708
MalI	GATC	2 cut(s)	299, 477
MboI	GATC	2 cut(s)	297, 475
MboII	GAAGA	1 cut(s)	32
MluCI	AATT	1 cut(s)	157
MnlI	CCTC	5 cut(s)	55, 109, 205, 220, 426
MspA1I	CMGCKG	1 cut(s)	91
MspI	CCGG	2 cut(s)	459, 638
MspR9I	CCNGG	1 cut(s)	639
Mva1269I	GAATGC	1 cut(s)	125
NciI	CCSGG	1 cut(s)	639
NdeII	GATC	2 cut(s)	297, 475
NlaIII	CATG	5 cut(s)	74, 304, 434, 520, 532
NlaIV	GGNNCC	1 cut(s)	546
NmuCI	GTSAC	1 cut(s)	708
PagI	TCATGA	1 cut(s)	300
PaqCI	CACCTGC	1 cut(s)	337
PctI	GAATGC	1 cut(s)	125
PfeI	GAWTC	3 cut(s)	480, 564, 607
PkrI	GCNGC	2 cut(s)	234, 523
PpuMI	RGGWCCY	1 cut(s)	545
Psp5II	RGGWCCY	1 cut(s)	545
PspN4I	GGNNCC	1 cut(s)	546
PspPI	GGNCC	1 cut(s)	545
PspPPI	RGGWCCY	1 cut(s)	545
PstI	CTGCAG	1 cut(s)	237
RsaI	GTAC	1 cut(s)	165
RsaNI	GTAC	1 cut(s)	164
SatI	GCNGC	2 cut(s)	233, 522
Sau3AI	GATC	2 cut(s)	297, 475
Sau96I	GGNCC	1 cut(s)	545
ScrFI	CCNGG	1 cut(s)	639
SetI	ASST	6 cut(s)	231, 320, 331, 418, 439, 550
SfaNI	GCATC	1 cut(s)	445
SfcI	CTRYAG	2 cut(s)	233, 704
SinI	GGWCC	1 cut(s)	545
Sse9I	AATT	1 cut(s)	157
SsiI	CCGC	1 cut(s)	91
SspMI	CTAG	2 cut(s)	47, 549
StyD4I	CCNGG	1 cut(s)	637
StyI	CCWWGG	2 cut(s)	13, 314
TaaI	ACNGT	2 cut(s)	633, 708
TaqI	TCGA	2 cut(s)	98, 478
TasI	AATT	1 cut(s)	157
TatI	WGTACW	1 cut(s)	163
TfiI	GAWTC	3 cut(s)	480, 564, 607
TscAI	CASTG	2 cut(s)	586, 636
TseFI	GTSAC	1 cut(s)	708
TseI	GCWGC	2 cut(s)	232, 521
Tsp45I	GTSAC	1 cut(s)	708
TspDTI	ATGAA	3 cut(s)	317, 447, 517
TspGWI	ACGGA	1 cut(s)	702
TspRI	CASTG	2 cut(s)	586, 636
VpaK11BI	GGWCC	1 cut(s)	545
XcmI	CCANNNNNNNNNTGG	1 cut(s)	514
XspI	CTAG	2 cut(s)	47, 549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.