Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8026288.1

Orthogroup ID

OG0006214

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 507

Gene Structure 506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8026288.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 506 bp

ctggacagtgacgccacctctagcaaaagttggttccccacttctaactataggcggagttccttacgctcagatggagatgaatgtgaagttgtccaggaaaagggttttccatccaaggggtcaaaaggcaagcaaacccattctgggacagctccccgtagatatggttatggtttatattctgagtctgagtccgattcctctgatactgattattctgattgtgagttaatagaaggttcagtgcttcatgaacattggaaaaaagcttcccaaaagagaaaacatgttgttcataattgtcggccgggtccagaggatcaagctagtggatctggatctcatggtgatactgttgatgtggagaataggacagaacagcatgcagaggctcctgtttgttcaagttcagagcatggaaattatgaaaaagaaagccctccggacatgggaactcatgatgaccactttgatggtagttcttttgaggccaaaatgaaaac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

169

Amino Acids

18.63

Weight (kDa)

5.31

Isoelectric Point (pI)

56.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006214)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69060
fragaria_vesca	FvH4_4g29350 FvH4_4g29350 FvH4_4g29350
malus_domestica	MD13G1056900.v1.1 MD16G1056300.v1.1
prunus_persica	Prupe.1G292900_v2.0.a1 Prupe.1G292900_v2.0.a1 Prupe.1G292900_v2.0.a1 Prupe.1G292900_v2.0.a1 Prupe.1G292900_v2.0.a1
pyrus_communis	pycom13g05080 pycom16g04930
rosa_chinensis	RchiOBHm_Chr4g0437421
rosa_laevigata	RLG00000006438
rosa_multiflora	Rmu_co8026288.1_g000001 Rmu_co8466195.1_g000001 Rmu_sc0006744.1_g000002 Rmu_sc0008352.1_g000003
rosa_roxburghii	Rroxscaffold_5G00378660
rosa_rugosa	Rorug04G0301400 Rorug04G0301500
rosa_samantha	Rh4AG355500 Rh4BG365900 Rh4CG380000 Rh4DG359600
rosa_wichuraiana	Rw4G031210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	445
AciI	CCGC	1 cut(s)	55
AclWI	GGATC	3 cut(s)	330, 343, 349
AcoI	YGGCCR	1 cut(s)	308
AcyI	GRCGYC	1 cut(s)	12
AfiI	CCNNNNNNNGG	4 cut(s)	103, 119, 147, 452
AflIII	ACRYGT	1 cut(s)	289
AgsI	TTSAA	1 cut(s)	408
AjnI	CCWGG	1 cut(s)	96
AluBI	AGCT	3 cut(s)	155, 272, 329
AluI	AGCT	3 cut(s)	155, 272, 329
AlwI	GGATC	3 cut(s)	330, 343, 349
Aor13HI	TCCGGA	1 cut(s)	445
AoxI	GGCC	2 cut(s)	308, 492
AspS9I	GGNCC	1 cut(s)	314
AsuC2I	CCSGG	1 cut(s)	312
AsuHPI	GGTGA	1 cut(s)	362
AvaII	GGWCC	1 cut(s)	314
BccI	CCATC	3 cut(s)	68, 121, 470
BciT130I	CCWGG	1 cut(s)	98
BcnI	CCSGG	1 cut(s)	312
BfaI	CTAG	2 cut(s)	21, 330
BfmI	CTRYAG	1 cut(s)	49
Bme1390I	CCNGG	2 cut(s)	98, 312
Bme18I	GGWCC	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	314
BmiI	GGNNCC	3 cut(s)	35, 315, 396
BmrFI	CCNGG	2 cut(s)	98, 312
BpuMI	CCSGG	1 cut(s)	312
BsaBI	GATNNNNATC	1 cut(s)	340
BsaHI	GRCGYC	1 cut(s)	12
BsaJI	CCNNGG	1 cut(s)	117
BsaWI	WCCGGW	1 cut(s)	445
Bsc4I	CCNNNNNNNGG	4 cut(s)	103, 119, 147, 452
Bse8I	GATNNNNATC	1 cut(s)	340
BseAI	TCCGGA	1 cut(s)	445
BseBI	CCWGG	1 cut(s)	98
BseDI	CCNNGG	1 cut(s)	117
BseGI	GGATG	1 cut(s)	113
BseJI	GATNNNNATC	1 cut(s)	340
BseLI	CCNNNNNNNGG	4 cut(s)	103, 119, 147, 452
BseMII	CTCAG	3 cut(s)	84, 177, 183
BseX3I	CGGCCG	1 cut(s)	308
Bsh1285I	CGRYCG	1 cut(s)	311
BshFI	GGCC	2 cut(s)	310, 494
BsiEI	CGRYCG	1 cut(s)	311
BsiSI	CCGG	2 cut(s)	311, 446
BslFI	GGGAC	1 cut(s)	163
BslI	CCNNNNNNNGG	4 cut(s)	103, 119, 147, 452
BsmFI	GGGAC	1 cut(s)	163
BsnI	GGCC	2 cut(s)	310, 494
Bsp13I	TCCGGA	1 cut(s)	445
Bsp143I	GATC	3 cut(s)	322, 335, 341
BspACI	CCGC	1 cut(s)	55
BspANI	GGCC	2 cut(s)	310, 494
BspCNI	CTCAG	3 cut(s)	83, 178, 184
BspEI	TCCGGA	1 cut(s)	445
BspHI	TCATGA	2 cut(s)	253, 460
BspLI	GGNNCC	3 cut(s)	35, 315, 396
BspPI	GGATC	3 cut(s)	330, 343, 349
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	3 cut(s)	322, 335, 341
BssNI	GRCGYC	1 cut(s)	12
BssT1I	CCWWGG	1 cut(s)	117
Bst2UI	CCWGG	1 cut(s)	98
Bst4CI	ACNGT	2 cut(s)	8, 358
BstACI	GRCGYC	1 cut(s)	12
BstC8I	GCNNGC	2 cut(s)	134, 387
BstDEI	CTNAG	3 cut(s)	70, 186, 192
BstF5I	GGATG	1 cut(s)	113
BstKTI	GATC	3 cut(s)	325, 338, 344
BstMBI	GATC	3 cut(s)	322, 335, 341
BstMCI	CGRYCG	1 cut(s)	311
BstNI	CCWGG	1 cut(s)	98
BstNSI	RCATGY	2 cut(s)	293, 389
BstSCI	CCNGG	2 cut(s)	96, 310
BstSFI	CTRYAG	1 cut(s)	49
BstX2I	RGATCY	2 cut(s)	335, 341
BstXI	CCANNNNNNTGG	1 cut(s)	476
BstYI	RGATCY	2 cut(s)	335, 341
BstZI	CGGCCG	1 cut(s)	308
BsuRI	GGCC	2 cut(s)	310, 494
BtsCI	GGATG	1 cut(s)	113
BtsIMutI	CAGTG	2 cut(s)	13, 252
Cac8I	GCNNGC	2 cut(s)	134, 387
CciI	TCATGA	2 cut(s)	253, 460
Cfr13I	GGNCC	1 cut(s)	314
CseI	GACGC	1 cut(s)	20
CviAII	CATG	7 cut(s)	254, 290, 347, 386, 419, 451, 461
CviJI	RGCY	7 cut(s)	155, 272, 310, 329, 395, 441, 494
CviKI_1	RGCY	7 cut(s)	155, 272, 310, 329, 395, 441, 494
DdeI	CTNAG	3 cut(s)	70, 186, 192
DpnI	GATC	3 cut(s)	324, 337, 343
DpnII	GATC	3 cut(s)	322, 335, 341
EaeI	YGGCCR	1 cut(s)	308
EagI	CGGCCG	1 cut(s)	308
EciI	GGCGGA	1 cut(s)	70
EclXI	CGGCCG	1 cut(s)	308
Eco130I	CCWWGG	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	314
Eco52I	CGGCCG	1 cut(s)	308
EcoRII	CCWGG	1 cut(s)	96
EcoT14I	CCWWGG	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	117
FaeI	CATG	7 cut(s)	257, 293, 350, 389, 422, 454, 464
FaqI	GGGAC	1 cut(s)	163
FatI	CATG	7 cut(s)	253, 289, 346, 385, 418, 450, 460
FokI	GGATG	1 cut(s)	100
FspBI	CTAG	2 cut(s)	21, 330
HaeIII	GGCC	2 cut(s)	310, 494
HapII	CCGG	2 cut(s)	311, 446
HgaI	GACGC	1 cut(s)	20
Hin1I	GRCGYC	1 cut(s)	12
Hin1II	CATG	7 cut(s)	257, 293, 350, 389, 422, 454, 464
HindIII	AAGCTT	1 cut(s)	270
HinfI	GANTC	3 cut(s)	188, 194, 200
HpaII	CCGG	2 cut(s)	311, 446
HphI	GGTGA	1 cut(s)	362
Hpy188I	TCNGA	7 cut(s)	73, 187, 193, 199, 208, 223, 415
Hpy188III	TCNNGA	5 cut(s)	254, 317, 339, 446, 461
HpyAV	CCTTC	1 cut(s)	233
HpyCH4III	ACNGT	2 cut(s)	8, 358
HpyCH4V	TGCA	1 cut(s)	389
HpyF3I	CTNAG	3 cut(s)	70, 186, 192
Hsp92I	GRCGYC	1 cut(s)	12
Hsp92II	CATG	7 cut(s)	257, 293, 350, 389, 422, 454, 464
Kpn2I	TCCGGA	1 cut(s)	445
Kzo9I	GATC	3 cut(s)	322, 335, 341
LmnI	GCTCC	2 cut(s)	160, 400
LpnPI	CCDG	8 cut(s)	83, 110, 132, 324, 324, 330, 411, 459
MaeI	CTAG	2 cut(s)	21, 330
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	3 cut(s)	324, 337, 343
MboI	GATC	3 cut(s)	322, 335, 341
MflI	RGATCY	2 cut(s)	335, 341
MluCI	AATT	2 cut(s)	301, 424
MlyI	GAGTC	2 cut(s)	197, 203
MnlI	CCTC	6 cut(s)	28, 214, 313, 385, 453, 484
MroI	TCCGGA	1 cut(s)	445
MseI	TTAA	1 cut(s)	233
MslI	CAYNNNNRTG	1 cut(s)	474
MspI	CCGG	2 cut(s)	311, 446
MspR9I	CCNGG	2 cut(s)	98, 312
MvaI	CCWGG	1 cut(s)	98
NciI	CCSGG	1 cut(s)	312
NdeII	GATC	3 cut(s)	322, 335, 341
NlaIII	CATG	7 cut(s)	257, 293, 350, 389, 422, 454, 464
NlaIV	GGNNCC	3 cut(s)	35, 315, 396
NmuCI	GTSAC	1 cut(s)	8
NspI	RCATGY	2 cut(s)	293, 389
PaeI	GCATGC	1 cut(s)	389
PagI	TCATGA	2 cut(s)	253, 460
PciI	ACATGT	1 cut(s)	289
PfeI	GAWTC	1 cut(s)	200
PfoI	TCCNGGA	1 cut(s)	96
PleI	GAGTC	2 cut(s)	196, 202
PpsI	GAGTC	2 cut(s)	196, 202
PscI	ACATGT	1 cut(s)	289
Psp6I	CCWGG	1 cut(s)	96
PspGI	CCWGG	1 cut(s)	96
PspN4I	GGNNCC	3 cut(s)	35, 315, 396
PspPI	GGNCC	1 cut(s)	314
PsuI	RGATCY	2 cut(s)	335, 341
RseI	CAYNNNNRTG	1 cut(s)	474
SaqAI	TTAA	1 cut(s)	233
Sau3AI	GATC	3 cut(s)	322, 335, 341
Sau96I	GGNCC	1 cut(s)	314
SchI	GAGTC	2 cut(s)	197, 203
ScrFI	CCNGG	2 cut(s)	98, 312
SetI	ASST	5 cut(s)	20, 157, 244, 274, 331
SfcI	CTRYAG	1 cut(s)	49
SinI	GGWCC	1 cut(s)	314
SmiMI	CAYNNNNRTG	1 cut(s)	474
SphI	GCATGC	1 cut(s)	389
Sse9I	AATT	2 cut(s)	301, 424
SsiI	CCGC	1 cut(s)	55
SspMI	CTAG	2 cut(s)	21, 330
StyD4I	CCNGG	2 cut(s)	96, 310
StyI	CCWWGG	1 cut(s)	117
TaaI	ACNGT	2 cut(s)	8, 358
TasI	AATT	2 cut(s)	301, 424
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	1 cut(s)	233
Tru9I	TTAA	1 cut(s)	233
TscAI	CASTG	2 cut(s)	13, 252
TseFI	GTSAC	1 cut(s)	8
Tsp45I	GTSAC	1 cut(s)	8
TspDTI	ATGAA	5 cut(s)	96, 242, 270, 287, 444
TspRI	CASTG	2 cut(s)	13, 252
VpaK11BI	GGWCC	1 cut(s)	314
XceI	RCATGY	2 cut(s)	293, 389
XspI	CTAG	2 cut(s)	21, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.