Rh4CG380000

DnaJ molecular chaperone homology domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Forward (+)
63261169 .. 63265458
4290 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG380000.1

Sequence Viewer

Length: 1722 bp
ATGAGAGGGGCAAAATCATCAAGAGTCTTTCCTGGGCTTGGAAGATGTTCTGGGAAAAAGCCTGTAGAAAGTTGCAAGGTTAATAAGGGTGTTAGCAAAGTTGAGATCATCGATCTTGACGACGATGATGATGTCATTGACATCGATGATATCGAGCAGCCACAATCTCGAGGTTCCAGTACATTGAGACAAAACAGAGAATTTAGTACTGTCATTGATATAGATGATGACGATGATGCAAGTAGTGACACCGATACCGTAATTTCTGTTGAAGAGGTTGGGGACCTGGACAGTGATGCCACCTCTAGCAAAAGTTGGTTCCCCACTTCTAACTATAGGCGGAGTTCCTTACGCTCAGATGGAGATGAATGTGAAGTTGTCCAGGAAAAGGGTTTTCCATCCAAGGGGTCAAAAGGCAAGCAAACCCATTCTGGGACAGCTCCCCGTAGATATGGTTATGGTTTTTATTCTGAGTCTGAGTCCGCTTCCTCTGATACTGATTATTCTGATTGTGAGTTAATAGAAGGTTCAGTGCTTCATGAACATTGGAAAAAAGCTTCCCAAAAGAGAAAACATGTTGTTCATAATTGTCAGCCGGGTCCAGAGGATCAAGCTAGTGGATCTGGATCTCATGGTGATACTGTTGATGTGGAGAATAGGACAGAACAGCATGCAGAGGCTCCTGTTTGTTCAAGTTCAGAGCATGGAAATTATGAAAAAGAAAGCCCTCCGGACATGGGAACTCATGATGACCACTTTGATGGTAGTTCTTTTGAGGCCAAAATGAAAACTTCTTCTGTGGAGTCCAATCAGAATGTTGCTAAGGATAGTTTTCCATGTGCAAAACCAGGGTCAGCTAAAGAAACAGAAAGCATACATAGGAATGATGATTTTCAGCATGTAAGAGGCAGAGTCCCAGAAGATCCTCTTAGTTGTAAGTCGCAAGCTGTTCATAATGATGGCATCTCTGGTTCTGGGAATGAAGAAGAGCAAAGTCCTGAAGAGCATTCCTCGCGGTCCACGGAAGAACTAGCTGGGAAACAATCTAAACATTTTATGCATAATGAACAAAAGCTCAGGGATGAAACTTGTTTCTCCGATTCTTTACCAAGGTTTAACAATGATCGAAGAAGCTCTGGGGTATTGAATGAAGAGCTTTCCTGCAAGAACCAACATTCTGGTGAAGTGCTTACTGACCACGGCAGAGTTGATTTAGGAGGCAAGGACGATGACTTTCAGAAAGGATCTAGTTTTGAGGAAAAGGTGAAATTAGTTCCTGGGCAGCCACTCAATGAAAAACATGTGGATTGTGGGATTTCTGAAGATGACCTTGGAGCTGTTCCTAGAGAAAGTAAAGTGTATGTGGATAAATCAGAAATAAGTAATGAAAAAGATGTTTCACAGGAGAGAGTGGGGGCAGATTCTGAGGTAGTATCTTTCTGCAACACTTCATCCAACAGAAGTAGTTCTGCAAGTGGGAATCAATCATCTGAAGCAAGGGAGCAGTTATGTGCTCAAGGTGTTAATGTTACTCCTGTTCAAAACAATATTATCACTGATCGTGAAAAGCTCAAGGAAACTGATGAATACAAGCAAGCAATGGAAGAAGAAATGGAATCCAGGCGGCAAGTCTTACAAATTCAGGTTATGCACATGCATGAATACCCTTTCTATTTGATGCTTTTATTTATTTTTATTTATTTTTTATTTTTTTATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

573

Amino Acids

63.76

Weight (kDa)

4.83

Isoelectric Point (pI)

58.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1015
AccIII TCCGGA 1 cut(s) 730
AciI CCGC 4 cut(s) 340, 483, 1015, 1624
AclWI GGATC 5 cut(s) 615, 628, 634, 917, 1252
AcsI RAATTY 2 cut(s) 200, 1638
AcuI CTGAAG 3 cut(s) 1020, 1341, 1512
AfaI GTAC 2 cut(s) 181, 208
AfiI CCNNNNNNNGG 5 cut(s) 38, 388, 404, 432, 737
AflIII ACRYGT 2 cut(s) 574, 1300
AgsI TTSAA 4 cut(s) 272, 693, 1147, 1541
AjnI CCWGG 6 cut(s) 31, 285, 381, 847, 1276, 1619
AjuI GAANNNNNNNTTGG 2 cut(s) 1314, 1346
Alw21I GWGCWC 1 cut(s) 1516
Alw26I GTCTC 1 cut(s) 181
AlwI GGATC 5 cut(s) 615, 628, 634, 917, 1252
AlwNI CAGNNNCTG 1 cut(s) 1424
Ama87I CYCGRG 1 cut(s) 168
Aor13HI TCCGGA 1 cut(s) 730
AoxI GGCC 1 cut(s) 777
ApeKI GCWGC 2 cut(s) 157, 1282
ApoI RAATTY 2 cut(s) 200, 1638
ArsI GACNNNNNNTTYG 2 cut(s) 836, 868
Asp700I GAANNNNTTC 2 cut(s) 46, 1465
AspS9I GGNCC 3 cut(s) 283, 599, 1017
AsuC2I CCSGG 1 cut(s) 597
AsuHPI GGTGA 3 cut(s) 647, 1193, 1276
AvaI CYCGRG 1 cut(s) 168
AvaII GGWCC 3 cut(s) 283, 599, 1017
Bbv12I GWGCWC 1 cut(s) 1516
BbvI GCAGC 2 cut(s) 169, 1294
BccI CCATC 4 cut(s) 353, 406, 755, 953
BceAI ACGGC 1 cut(s) 1216
BciT130I CCWGG 6 cut(s) 33, 287, 383, 849, 1278, 1621
BcnI CCSGG 1 cut(s) 597
BcoDI GTCTC 1 cut(s) 181
BfaI CTAG 5 cut(s) 306, 615, 1031, 1248, 1344
BfmI CTRYAG 2 cut(s) 63, 334
BisI GCNGC 3 cut(s) 158, 1283, 1625
BlsI GCNGC 3 cut(s) 159, 1284, 1626
BmcAI AGTACT 1 cut(s) 208
Bme1390I CCNGG 7 cut(s) 33, 287, 383, 597, 849, 1278, 1621
Bme18I GGWCC 3 cut(s) 283, 599, 1017
BmeT110I CYCGRG 1 cut(s) 168
BmgT120I GGNCC 3 cut(s) 283, 599, 1017
BmiI GGNNCC 5 cut(s) 175, 284, 320, 600, 681
BmrFI CCNGG 7 cut(s) 33, 287, 383, 597, 849, 1278, 1621
BmsI GCATC 4 cut(s) 226, 286, 972, 1668
BplI GAGNNNNNCTC 2 cut(s) 995, 1027
Bpu10I CCTNAGC 2 cut(s) 822, 1076
BpuEI CTTGAG 2 cut(s) 1500, 1556
BpuMI CCSGG 1 cut(s) 597
Bsa29I ATCGAT 2 cut(s) 111, 144
BsaBI GATNNNNATC 1 cut(s) 625
BsaJI CCNNGG 8 cut(s) 32, 402, 848, 1020, 1109, 1198, 1277, 1330
BsaWI WCCGGW 1 cut(s) 730
Bsc4I CCNNNNNNNGG 5 cut(s) 38, 388, 404, 432, 737
Bse1I ACTGG 1 cut(s) 177
Bse3DI GCAATG 1 cut(s) 1605
Bse8I GATNNNNATC 1 cut(s) 625
BseAI TCCGGA 1 cut(s) 730
BseBI CCWGG 6 cut(s) 33, 287, 383, 849, 1278, 1621
BseCI ATCGAT 2 cut(s) 111, 144
BseDI CCNNGG 8 cut(s) 32, 402, 848, 1020, 1109, 1198, 1277, 1330
BseGI GGATG 3 cut(s) 398, 1087, 1451
BseJI GATNNNNATC 1 cut(s) 625
BseLI CCNNNNNNNGG 5 cut(s) 38, 388, 404, 432, 737
BseMI GCAATG 1 cut(s) 1605
BseMII CTCAG 5 cut(s) 369, 462, 468, 1090, 1416
BseNI ACTGG 1 cut(s) 177
BseXI GCAGC 2 cut(s) 169, 1294
BseYI CCCAGC 1 cut(s) 1034
Bsh1236I CGCG 1 cut(s) 1015
BshFI GGCC 1 cut(s) 779
BshVI ATCGAT 2 cut(s) 111, 144
BsiHKAI GWGCWC 1 cut(s) 1516
BsiHKCI CYCGRG 1 cut(s) 168
BsiSI CCGG 2 cut(s) 596, 731
BslFI GGGAC 3 cut(s) 296, 448, 899
BslI CCNNNNNNNGG 5 cut(s) 38, 388, 404, 432, 737
BsmAI GTCTC 1 cut(s) 181
BsmFI GGGAC 3 cut(s) 296, 448, 899
BsmI GAATGC 1 cut(s) 1006
BsnI GGCC 1 cut(s) 779
BsoBI CYCGRG 1 cut(s) 168
Bsp1286I GDGCHC 1 cut(s) 1516
Bsp13I TCCGGA 1 cut(s) 730
Bsp143I GATC 9 cut(s) 105, 112, 607, 620, 626, 922, 1123, 1244, 1558
BspACI CCGC 4 cut(s) 340, 483, 1015, 1624
BspANI GGCC 1 cut(s) 779
BspCNI CTCAG 5 cut(s) 368, 463, 469, 1089, 1417
BspDI ATCGAT 2 cut(s) 111, 144
BspEI TCCGGA 1 cut(s) 730
BspFNI CGCG 1 cut(s) 1015
BspHI TCATGA 2 cut(s) 538, 745
BspLI GGNNCC 5 cut(s) 175, 284, 320, 600, 681
BspPI GGATC 5 cut(s) 615, 628, 634, 917, 1252
BspQI GCTCTTC 3 cut(s) 981, 996, 1146
BsrDI GCAATG 1 cut(s) 1605
BsrI ACTGG 1 cut(s) 177
BssECI CCNNGG 8 cut(s) 32, 402, 848, 1020, 1109, 1198, 1277, 1330
BssMI GATC 9 cut(s) 105, 112, 607, 620, 626, 922, 1123, 1244, 1558
BssT1I CCWWGG 3 cut(s) 402, 1109, 1330
Bst2UI CCWGG 6 cut(s) 33, 287, 383, 849, 1278, 1621
Bst4CI ACNGT 4 cut(s) 211, 259, 293, 643
Bst6I CTCTTC 4 cut(s) 267, 981, 996, 1146
BstC8I GCNNGC 4 cut(s) 419, 672, 945, 1596
BstDEI CTNAG 7 cut(s) 355, 471, 477, 822, 929, 1076, 1425
BstDSI CCRYGG 2 cut(s) 1020, 1198
BstF5I GGATG 3 cut(s) 398, 1087, 1451
BstFNI CGCG 1 cut(s) 1015
BstKTI GATC 9 cut(s) 108, 115, 610, 623, 629, 925, 1126, 1247, 1561
BstMAI GTCTC 1 cut(s) 181
BstMBI GATC 9 cut(s) 105, 112, 607, 620, 626, 922, 1123, 1244, 1558
BstMWI GCNNNNNNNGC 1 cut(s) 1012
BstNI CCWGG 6 cut(s) 33, 287, 383, 849, 1278, 1621
BstNSI RCATGY 5 cut(s) 578, 674, 902, 1304, 1657
BstSCI CCNGG 7 cut(s) 31, 285, 381, 595, 847, 1276, 1619
BstSFI CTRYAG 2 cut(s) 63, 334
BstUI CGCG 1 cut(s) 1015
BstV1I GCAGC 2 cut(s) 169, 1294
BstX2I RGATCY 4 cut(s) 620, 626, 922, 1244
BstXI CCANNNNNNTGG 2 cut(s) 761, 1178
BstYI RGATCY 4 cut(s) 620, 626, 922, 1244
Bsu15I ATCGAT 2 cut(s) 111, 144
BsuRI GGCC 1 cut(s) 779
BsuTUI ATCGAT 2 cut(s) 111, 144
BtgI CCRYGG 2 cut(s) 1020, 1198
BtsCI GGATG 3 cut(s) 398, 1087, 1451
BtsIMutI CAGTG 3 cut(s) 298, 537, 1554
Cac8I GCNNGC 4 cut(s) 419, 672, 945, 1596
CaiI CAGNNNCTG 1 cut(s) 1424
CciI TCATGA 2 cut(s) 538, 745
Cfr13I GGNCC 3 cut(s) 283, 599, 1017
ClaI ATCGAT 2 cut(s) 111, 144
Csp6I GTAC 2 cut(s) 180, 207
CviQI GTAC 2 cut(s) 180, 207
DdeI CTNAG 7 cut(s) 355, 471, 477, 822, 929, 1076, 1425
DpnI GATC 9 cut(s) 107, 114, 609, 622, 628, 924, 1125, 1246, 1560
DpnII GATC 9 cut(s) 105, 112, 607, 620, 626, 922, 1123, 1244, 1558
Eam1104I CTCTTC 4 cut(s) 267, 981, 996, 1146
EarI CTCTTC 4 cut(s) 267, 981, 996, 1146
EciI GGCGGA 1 cut(s) 355
Eco130I CCWWGG 3 cut(s) 402, 1109, 1330
Eco32I GATATC 1 cut(s) 151
Eco47I GGWCC 3 cut(s) 283, 599, 1017
Eco57I CTGAAG 3 cut(s) 1020, 1341, 1512
Eco88I CYCGRG 1 cut(s) 168
EcoO109I RGGNCCY 1 cut(s) 283
EcoRII CCWGG 6 cut(s) 31, 285, 381, 847, 1276, 1619
EcoRV GATATC 1 cut(s) 151
EcoT14I CCWWGG 3 cut(s) 402, 1109, 1330
EcoT22I ATGCAT 2 cut(s) 1062, 1659
ErhI CCWWGG 3 cut(s) 402, 1109, 1330
FalI AAGNNNNNCTT 4 cut(s) 912, 944, 1314, 1346
FaqI GGGAC 3 cut(s) 296, 448, 899
Fnu4HI GCNGC 3 cut(s) 158, 1283, 1625
FokI GGATG 3 cut(s) 385, 1094, 1438
Fsp4HI GCNGC 3 cut(s) 158, 1283, 1625
FspBI CTAG 5 cut(s) 306, 615, 1031, 1248, 1344
GluI GCNGC 3 cut(s) 158, 1283, 1625
GsaI CCCAGC 1 cut(s) 1038
HaeIII GGCC 1 cut(s) 779
HapII CCGG 2 cut(s) 596, 731
HindIII AAGCTT 1 cut(s) 555
HinfI GANTC 9 cut(s) 24, 473, 479, 803, 912, 1100, 1421, 1480, 1616
HpaII CCGG 2 cut(s) 596, 731
HphI GGTGA 3 cut(s) 647, 1193, 1276
Hpy166II GTNNAC 1 cut(s) 1020
Hpy8I GTNNAC 1 cut(s) 1020
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 1 cut(s) 518
HpyCH4III ACNGT 4 cut(s) 211, 259, 293, 643
HpyF10VI GCNNNNNNNGC 1 cut(s) 1012
HpyF3I CTNAG 7 cut(s) 355, 471, 477, 822, 929, 1076, 1425
Kpn2I TCCGGA 1 cut(s) 730
Kzo9I GATC 9 cut(s) 105, 112, 607, 620, 626, 922, 1123, 1244, 1558
LguI GCTCTTC 3 cut(s) 981, 996, 1146
LmnI GCTCC 4 cut(s) 445, 685, 1334, 1501
Lsp1109I GCAGC 2 cut(s) 169, 1294
LweI GCATC 4 cut(s) 226, 286, 972, 1668
MaeI CTAG 5 cut(s) 306, 615, 1031, 1248, 1344
MaeIII GTNAC 2 cut(s) 245, 1528
MalI GATC 9 cut(s) 107, 114, 609, 622, 628, 924, 1125, 1246, 1560
MboI GATC 9 cut(s) 105, 112, 607, 620, 626, 922, 1123, 1244, 1558
MflI RGATCY 4 cut(s) 620, 626, 922, 1244
MhlI GDGCHC 1 cut(s) 1516
MluCI AATT 6 cut(s) 200, 261, 586, 709, 1268, 1638
MlyI GAGTC 5 cut(s) 33, 482, 488, 812, 921
MmeI TCCRAC 1 cut(s) 1479
Mph1103I ATGCAT 2 cut(s) 1062, 1659
MroI TCCGGA 1 cut(s) 730
MroXI GAANNNNTTC 2 cut(s) 46, 1465
MseI TTAA 5 cut(s) 81, 518, 1116, 1524, 1720
MslI CAYNNNNRTG 5 cut(s) 759, 882, 957, 1179, 1656
MspI CCGG 2 cut(s) 596, 731
MspR9I CCNGG 7 cut(s) 33, 287, 383, 597, 849, 1278, 1621
Mva1269I GAATGC 1 cut(s) 1006
MvaI CCWGG 6 cut(s) 33, 287, 383, 849, 1278, 1621
MvnI CGCG 1 cut(s) 1015
MwoI GCNNNNNNNGC 1 cut(s) 1012
NciI CCSGG 1 cut(s) 597
NdeII GATC 9 cut(s) 105, 112, 607, 620, 626, 922, 1123, 1244, 1558
NlaIV GGNNCC 5 cut(s) 175, 284, 320, 600, 681
NmuCI GTSAC 1 cut(s) 245
NsiI ATGCAT 2 cut(s) 1062, 1659
NspI RCATGY 5 cut(s) 578, 674, 902, 1304, 1657
PaeI GCATGC 1 cut(s) 674
PaeR7I CTCGAG 1 cut(s) 168
PagI TCATGA 2 cut(s) 538, 745
PciI ACATGT 2 cut(s) 574, 1300
PciSI GCTCTTC 3 cut(s) 981, 996, 1146
PcsI WCGNNNNNNNCGW 2 cut(s) 117, 150
PctI GAATGC 1 cut(s) 1006
PdmI GAANNNNTTC 2 cut(s) 46, 1465
PfeI GAWTC 4 cut(s) 1100, 1421, 1480, 1616
PfoI TCCNGGA 1 cut(s) 381
PkrI GCNGC 3 cut(s) 159, 1284, 1626
PleI GAGTC 5 cut(s) 32, 481, 487, 811, 920
PpsI GAGTC 5 cut(s) 32, 481, 487, 811, 920
PpuMI RGGWCCY 1 cut(s) 283
PscI ACATGT 2 cut(s) 574, 1300
Psp5II RGGWCCY 1 cut(s) 283
Psp6I CCWGG 6 cut(s) 31, 285, 381, 847, 1276, 1619
PspFI CCCAGC 1 cut(s) 1034
PspGI CCWGG 6 cut(s) 31, 285, 381, 847, 1276, 1619
PspN4I GGNNCC 5 cut(s) 175, 284, 320, 600, 681
PspPI GGNCC 3 cut(s) 283, 599, 1017
PspPPI RGGWCCY 1 cut(s) 283
PstNI CAGNNNCTG 1 cut(s) 1424
PsuI RGATCY 4 cut(s) 620, 626, 922, 1244
RsaI GTAC 2 cut(s) 181, 208
RsaNI GTAC 2 cut(s) 180, 207
RseI CAYNNNNRTG 5 cut(s) 759, 882, 957, 1179, 1656
SapI GCTCTTC 3 cut(s) 981, 996, 1146
SaqAI TTAA 5 cut(s) 81, 518, 1116, 1524, 1720
SatI GCNGC 3 cut(s) 158, 1283, 1625
Sau3AI GATC 9 cut(s) 105, 112, 607, 620, 626, 922, 1123, 1244, 1558
Sau96I GGNCC 3 cut(s) 283, 599, 1017
ScaI AGTACT 1 cut(s) 208
SchI GAGTC 5 cut(s) 33, 482, 488, 812, 921
ScrFI CCNGG 7 cut(s) 33, 287, 383, 597, 849, 1278, 1621
SduI GDGCHC 1 cut(s) 1516
SfaNI GCATC 4 cut(s) 226, 286, 972, 1668
SfcI CTRYAG 2 cut(s) 63, 334
Sfr274I CTCGAG 1 cut(s) 168
SinI GGWCC 3 cut(s) 283, 599, 1017
SlaI CTCGAG 1 cut(s) 168
SmiMI CAYNNNNRTG 5 cut(s) 759, 882, 957, 1179, 1656
SmlI CTYRAG 3 cut(s) 168, 1515, 1571
SmoI CTYRAG 3 cut(s) 168, 1515, 1571
SphI GCATGC 1 cut(s) 674
Sse9I AATT 6 cut(s) 200, 261, 586, 709, 1268, 1638
SsiI CCGC 4 cut(s) 340, 483, 1015, 1624
SspI AATATT 1 cut(s) 1549
SspMI CTAG 5 cut(s) 306, 615, 1031, 1248, 1344
StyD4I CCNGG 7 cut(s) 31, 285, 381, 595, 847, 1276, 1619
StyI CCWWGG 3 cut(s) 402, 1109, 1330
TaaI ACNGT 4 cut(s) 211, 259, 293, 643
TaqI TCGA 5 cut(s) 111, 144, 153, 169, 1126
TasI AATT 6 cut(s) 200, 261, 586, 709, 1268, 1638
TatI WGTACW 2 cut(s) 179, 206
TauI GCSGC 1 cut(s) 1627
TfiI GAWTC 4 cut(s) 1100, 1421, 1480, 1616
Tru1I TTAA 5 cut(s) 81, 518, 1116, 1524, 1720
Tru9I TTAA 5 cut(s) 81, 518, 1116, 1524, 1720
TscAI CASTG 3 cut(s) 298, 537, 1561
TseFI GTSAC 1 cut(s) 245
TseI GCWGC 2 cut(s) 157, 1282
Tsp45I GTSAC 1 cut(s) 245
TspGWI ACGGA 1 cut(s) 1037
TspRI CASTG 3 cut(s) 298, 537, 1561
VpaK11BI GGWCC 3 cut(s) 283, 599, 1017
XapI RAATTY 2 cut(s) 200, 1638
XceI RCATGY 5 cut(s) 578, 674, 902, 1304, 1657
XhoI CTCGAG 1 cut(s) 168
XmnI GAANNNNTTC 2 cut(s) 46, 1465
XspI CTAG 5 cut(s) 306, 615, 1031, 1248, 1344
ZrmI AGTACT 1 cut(s) 208
Zsp2I ATGCAT 2 cut(s) 1062, 1659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.