Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8466195.1

Orthogroup ID

OG0006214

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1855

Gene Structure 1855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8466195.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 976 bp

ggatgaaacttgtttctccgattctttaccaaggtttaacaatgatcgaagaagctctggggtgttgaatgaagagctttcctgcaagaaccaacattctggtgaagtgcttactgaccacggcagagttgatttaggaggtaaggacgatgactttcagaaaggatctagttttgaggaaaaggtgaaattagttcctgggcagccactcaatgaaacacatgtgaattgtgggatttctgaagatgaccttggagctgttcctagagaaagtaaagtgtatgtggataaatcagaaataagtaatgaaaaagatgtttcacaggagagagtgggggcagattctgaggtagtatctttctgcaacccttcatcccacagaagtagttctgcaagtgggaatcaatcatctgaagcaagggagcagttatgtgctcaaggtgttaatgttactcctgttcaaaacaatattatcactgatcgtgaaaagctcaaggaaactgatgaatacaagcaagcaatggaagaagaaatggaatccaggcggcaagtcttacaaattcaggcagaagaggcacagagattgcgtaagaggaaaaaagctgaaagcatgcgcttattggacatgcagagaagacaaaagcaacgcgtggaagaagttagagaaactcaaaagaaggatgaagaaaatttgaacatgaaagagaaacttcgtgctgaagtaaggaaggaactcaacagattggaatcgtcatgcaatagcatggcttctttgcttcgctgcttgggaatacaagtggggtcaggtgtgcatcctttgccacaggaggtgcatgcagcttataaacgggcattattgaaatttcaccctgatcgagcatcaagaactgacatccgccagatggttgaagctgaggaaaaatttaagcttatatctcgcatgaaggagaaacttatatcaactacgtggttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

324

Amino Acids

37.01

Weight (kDa)

6.1

Isoelectric Point (pI)

48.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006214)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69060
fragaria_vesca	FvH4_4g29350 FvH4_4g29350 FvH4_4g29350
malus_domestica	MD13G1056900.v1.1 MD16G1056300.v1.1
prunus_persica	Prupe.1G292900_v2.0.a1 Prupe.1G292900_v2.0.a1 Prupe.1G292900_v2.0.a1 Prupe.1G292900_v2.0.a1 Prupe.1G292900_v2.0.a1
pyrus_communis	pycom13g05080 pycom16g04930
rosa_chinensis	RchiOBHm_Chr4g0437421
rosa_laevigata	RLG00000006438
rosa_multiflora	Rmu_co8026288.1_g000001 Rmu_co8466195.1_g000001 Rmu_sc0006744.1_g000002 Rmu_sc0008352.1_g000003
rosa_roxburghii	Rroxscaffold_5G00378660
rosa_rugosa	Rorug04G0301400 Rorug04G0301500
rosa_samantha	Rh4AG355500 Rh4BG365900 Rh4CG380000 Rh4DG359600
rosa_wichuraiana	Rw4G031210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	844
AccII	CGCG	1 cut(s)	649
AciI	CCGC	2 cut(s)	545, 896
AclWI	GGATC	1 cut(s)	173
AcsI	RAATTY	4 cut(s)	559, 689, 861, 921
AcuI	CTGAAG	3 cut(s)	262, 433, 739
AfiI	CCNNNNNNNGG	1 cut(s)	902
AflIII	ACRYGT	2 cut(s)	221, 647
AgsI	TTSAA	5 cut(s)	68, 462, 695, 860, 909
AjnI	CCWGG	2 cut(s)	197, 540
AjuI	GAANNNNNNNTTGG	2 cut(s)	235, 267
AluBI	AGCT	8 cut(s)	55, 77, 258, 491, 603, 840, 912, 929
AluI	AGCT	8 cut(s)	55, 77, 258, 491, 603, 840, 912, 929
Alw21I	GWGCWC	1 cut(s)	437
AlwI	GGATC	1 cut(s)	173
AlwNI	CAGNNNCTG	1 cut(s)	345
ApeKI	GCWGC	3 cut(s)	203, 781, 837
ApoI	RAATTY	4 cut(s)	559, 689, 861, 921
Asp700I	GAANNNNTTC	1 cut(s)	386
AspLEI	GCGC	1 cut(s)	616
AsuHPI	GGTGA	3 cut(s)	114, 197, 858
BbsI	GAAGAC	1 cut(s)	641
Bbv12I	GWGCWC	1 cut(s)	437
BbvCI	CCTCAGC	1 cut(s)	913
BbvI	GCAGC	3 cut(s)	215, 768, 849
BccI	CCATC	1 cut(s)	896
BceAI	ACGGC	1 cut(s)	137
BciT130I	CCWGG	2 cut(s)	199, 542
BfaI	CTAG	2 cut(s)	169, 265
BisI	GCNGC	4 cut(s)	204, 546, 782, 838
BlsI	GCNGC	4 cut(s)	205, 547, 783, 839
Bme1390I	CCNGG	2 cut(s)	199, 542
BmrFI	CCNGG	2 cut(s)	199, 542
BmsI	GCATC	2 cut(s)	821, 888
BpiI	GAAGAC	1 cut(s)	641
Bpu10I	CCTNAGC	1 cut(s)	913
BpuEI	CTTGAG	2 cut(s)	421, 477
BsaAI	YACGTR	1 cut(s)	967
BsaBI	GATNNNNATC	1 cut(s)	746
BsaJI	CCNNGG	4 cut(s)	30, 119, 198, 251
Bsc4I	CCNNNNNNNGG	1 cut(s)	902
Bse3DI	GCAATG	1 cut(s)	526
Bse8I	GATNNNNATC	1 cut(s)	746
BseBI	CCWGG	2 cut(s)	199, 542
BseDI	CCNNGG	4 cut(s)	30, 119, 198, 251
BseGI	GGATG	5 cut(s)	8, 372, 686, 812, 892
BseJI	GATNNNNATC	1 cut(s)	746
BseLI	CCNNNNNNNGG	1 cut(s)	902
BseMI	GCAATG	1 cut(s)	526
BseMII	CTCAG	2 cut(s)	337, 904
BseXI	GCAGC	3 cut(s)	215, 768, 849
Bsh1236I	CGCG	1 cut(s)	649
BsiHKAI	GWGCWC	1 cut(s)	437
BslI	CCNNNNNNNGG	1 cut(s)	902
Bsp1286I	GDGCHC	1 cut(s)	437
Bsp143I	GATC	4 cut(s)	44, 165, 479, 872
BspACI	CCGC	2 cut(s)	545, 896
BspCNI	CTCAG	2 cut(s)	338, 905
BspFNI	CGCG	1 cut(s)	649
BspPI	GGATC	1 cut(s)	173
BspQI	GCTCTTC	1 cut(s)	67
BsrDI	GCAATG	1 cut(s)	526
BssECI	CCNNGG	4 cut(s)	30, 119, 198, 251
BssMI	GATC	4 cut(s)	44, 165, 479, 872
BssT1I	CCWWGG	2 cut(s)	30, 251
Bst2UI	CCWGG	2 cut(s)	199, 542
Bst6I	CTCTTC	2 cut(s)	67, 565
BstAPI	GCANNNNNTGC	1 cut(s)	818
BstBAI	YACGTR	1 cut(s)	967
BstC8I	GCNNGC	3 cut(s)	517, 612, 835
BstDEI	CTNAG	2 cut(s)	346, 913
BstDSI	CCRYGG	1 cut(s)	119
BstF5I	GGATG	5 cut(s)	8, 372, 686, 812, 892
BstFNI	CGCG	1 cut(s)	649
BstHHI	GCGC	1 cut(s)	616
BstKTI	GATC	4 cut(s)	47, 168, 482, 875
BstMBI	GATC	4 cut(s)	44, 165, 479, 872
BstMWI	GCNNNNNNNGC	2 cut(s)	573, 818
BstNI	CCWGG	2 cut(s)	199, 542
BstNSI	RCATGY	4 cut(s)	225, 614, 629, 837
BstSCI	CCNGG	2 cut(s)	197, 540
BstUI	CGCG	1 cut(s)	649
BstV1I	GCAGC	3 cut(s)	215, 768, 849
BstV2I	GAAGAC	1 cut(s)	641
BstX2I	RGATCY	1 cut(s)	165
BstXI	CCANNNNNNTGG	1 cut(s)	99
BstYI	RGATCY	1 cut(s)	165
BtgI	CCRYGG	1 cut(s)	119
BtsCI	GGATG	5 cut(s)	8, 372, 686, 812, 892
BtsIMutI	CAGTG	1 cut(s)	475
Cac8I	GCNNGC	3 cut(s)	517, 612, 835
CaiI	CAGNNNCTG	1 cut(s)	345
CfoI	GCGC	1 cut(s)	616
CviAII	CATG	8 cut(s)	222, 611, 626, 698, 754, 764, 834, 941
DdeI	CTNAG	2 cut(s)	346, 913
DpnI	GATC	4 cut(s)	46, 167, 481, 874
DpnII	GATC	4 cut(s)	44, 165, 479, 872
Eam1104I	CTCTTC	2 cut(s)	67, 565
EarI	CTCTTC	2 cut(s)	67, 565
EciI	GGCGGA	1 cut(s)	885
Eco130I	CCWWGG	2 cut(s)	30, 251
Eco57I	CTGAAG	3 cut(s)	262, 433, 739
EcoRII	CCWGG	2 cut(s)	197, 540
EcoT14I	CCWWGG	2 cut(s)	30, 251
ErhI	CCWWGG	2 cut(s)	30, 251
FaeI	CATG	8 cut(s)	225, 614, 629, 701, 757, 767, 837, 944
FalI	AAGNNNNNCTT	4 cut(s)	235, 267, 694, 726
FatI	CATG	8 cut(s)	221, 610, 625, 697, 753, 763, 833, 940
Fnu4HI	GCNGC	4 cut(s)	204, 546, 782, 838
FokI	GGATG	5 cut(s)	15, 359, 693, 799, 879
Fsp4HI	GCNGC	4 cut(s)	204, 546, 782, 838
FspBI	CTAG	2 cut(s)	169, 265
GlaI	GCGC	1 cut(s)	615
GluI	GCNGC	4 cut(s)	204, 546, 782, 838
HhaI	GCGC	1 cut(s)	616
Hin1II	CATG	8 cut(s)	225, 614, 629, 701, 757, 767, 837, 944
Hin6I	GCGC	1 cut(s)	614
HinP1I	GCGC	1 cut(s)	614
HindIII	AAGCTT	1 cut(s)	927
HinfI	GANTC	5 cut(s)	21, 342, 401, 537, 747
HphI	GGTGA	3 cut(s)	114, 197, 858
Hpy188I	TCNGA	7 cut(s)	20, 160, 242, 296, 347, 413, 975
Hpy188III	TCNNGA	2 cut(s)	483, 883
HpyAV	CCTTC	4 cut(s)	379, 671, 722, 938
HpyCH4IV	ACGT	1 cut(s)	966
HpyCH4V	TGCA	8 cut(s)	85, 364, 393, 629, 757, 812, 833, 837
HpyF10VI	GCNNNNNNNGC	2 cut(s)	573, 818
HpyF3I	CTNAG	2 cut(s)	346, 913
HpySE526I	ACGT	1 cut(s)	966
Hsp92II	CATG	8 cut(s)	225, 614, 629, 701, 757, 767, 837, 944
HspAI	GCGC	1 cut(s)	614
Kzo9I	GATC	4 cut(s)	44, 165, 479, 872
LguI	GCTCTTC	1 cut(s)	67
LmnI	GCTCC	2 cut(s)	255, 422
Lsp1109I	GCAGC	3 cut(s)	215, 768, 849
LweI	GCATC	2 cut(s)	821, 888
MaeI	CTAG	2 cut(s)	169, 265
MaeII	ACGT	1 cut(s)	966
MaeIII	GTNAC	1 cut(s)	449
MalI	GATC	4 cut(s)	46, 167, 481, 874
MboI	GATC	4 cut(s)	44, 165, 479, 872
MboII	GAAGA	9 cut(s)	61, 84, 255, 537, 540, 582, 646, 666, 696
MflI	RGATCY	1 cut(s)	165
MhlI	GDGCHC	1 cut(s)	437
MluCI	AATT	6 cut(s)	189, 227, 559, 689, 861, 921
MluI	ACGCGT	1 cut(s)	647
MnlI	CCTC	7 cut(s)	132, 170, 341, 566, 586, 821, 908
MroXI	GAANNNNTTC	1 cut(s)	386
MseI	TTAA	3 cut(s)	37, 445, 925
MslI	CAYNNNNRTG	1 cut(s)	100
MspR9I	CCNGG	2 cut(s)	199, 542
MvaI	CCWGG	2 cut(s)	199, 542
MvnI	CGCG	1 cut(s)	649
MwoI	GCNNNNNNNGC	2 cut(s)	573, 818
NdeII	GATC	4 cut(s)	44, 165, 479, 872
NlaIII	CATG	8 cut(s)	225, 614, 629, 701, 757, 767, 837, 944
NspI	RCATGY	4 cut(s)	225, 614, 629, 837
PaeI	GCATGC	2 cut(s)	614, 837
PciI	ACATGT	1 cut(s)	221
PciSI	GCTCTTC	1 cut(s)	67
PdmI	GAANNNNTTC	1 cut(s)	386
PfeI	GAWTC	5 cut(s)	21, 342, 401, 537, 747
PkrI	GCNGC	4 cut(s)	205, 547, 783, 839
Ppu21I	YACGTR	1 cut(s)	967
PscI	ACATGT	1 cut(s)	221
PsiI	TTATAA	1 cut(s)	844
Psp6I	CCWGG	2 cut(s)	197, 540
PspGI	CCWGG	2 cut(s)	197, 540
PstNI	CAGNNNCTG	1 cut(s)	345
PsuI	RGATCY	1 cut(s)	165
RseI	CAYNNNNRTG	1 cut(s)	100
SapI	GCTCTTC	1 cut(s)	67
SaqAI	TTAA	3 cut(s)	37, 445, 925
SatI	GCNGC	4 cut(s)	204, 546, 782, 838
Sau3AI	GATC	4 cut(s)	44, 165, 479, 872
ScrFI	CCNGG	2 cut(s)	199, 542
SduI	GDGCHC	1 cut(s)	437
SfaNI	GCATC	2 cut(s)	821, 888
SmiMI	CAYNNNNRTG	1 cut(s)	100
SmlI	CTYRAG	2 cut(s)	436, 492
SmoI	CTYRAG	2 cut(s)	436, 492
SphI	GCATGC	2 cut(s)	614, 837
Sse9I	AATT	6 cut(s)	189, 227, 559, 689, 861, 921
SsiI	CCGC	2 cut(s)	545, 896
SspI	AATATT	1 cut(s)	470
SspMI	CTAG	2 cut(s)	169, 265
StyD4I	CCNGG	2 cut(s)	197, 540
StyI	CCWWGG	2 cut(s)	30, 251
TaiI	ACGT	1 cut(s)	969
TaqI	TCGA	2 cut(s)	47, 875
TasI	AATT	6 cut(s)	189, 227, 559, 689, 861, 921
TauI	GCSGC	1 cut(s)	548
TfiI	GAWTC	5 cut(s)	21, 342, 401, 537, 747
Tru1I	TTAA	3 cut(s)	37, 445, 925
Tru9I	TTAA	3 cut(s)	37, 445, 925
TscAI	CASTG	1 cut(s)	482
TseI	GCWGC	3 cut(s)	203, 781, 837
TspDTI	ATGAA	9 cut(s)	19, 85, 229, 322, 361, 520, 697, 714, 957
TspRI	CASTG	1 cut(s)	482
XapI	RAATTY	4 cut(s)	559, 689, 861, 921
XceI	RCATGY	4 cut(s)	225, 614, 629, 837
XmnI	GAANNNNTTC	1 cut(s)	386
XspI	CTAG	2 cut(s)	169, 265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.