pycom13g05370

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0010343
Physical Location & Seq
Reverse (-)
3588847 .. 3590699
1853 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 699 bp
ATGATTCGGAGGAGGAGCCTCGGCCTTGTACGGTGGCACAGTGCTCGGAGCTGCGTCGCCTCCTCTTCTTCTCCGTCGTTCAGAAGCCTCTCTTTCCCAACATCCCACCCCAAACTTCAAAAACCCTCTCTCCTCCTATGCCCAAAACCTCTTCCTCCTCATCTTTCTTCTTTGCCCTCTCTTTCTCTTAATCCAAATCCCAATATATTTCCTCCCGCTGCTCTTCGTTTCGTAAGCACCAAATCCTCCGAGGATGTTGAGGAGGACATCCCAGATGATCGTTTTCCTGGTGACGAAATTGAAGAGGGAGACACCACTGATGGCTGGGAGGAAGAGGATGCCGGCGAGCCTGAGATTGGCGATGGAGGCGATGGTGGTGGAGTGGTGTTTCAGGGTGTCCCTTGGGGTGAGCGGGCTCTATCCCTTGCTCGTGAGGTCTTAACGCAATTCGAAGATAATGTGAAGCTCTTCTCATTCAAGACTACTCCTCGAGGATATGTATATGTGAGACTGGACAAACTGTCAAACGAATACGGGTGTCCTGGCATGGAGGAACTTGAACGCTACAATCAAGAATACAAGAAAAGACTAGATGAAGCTGGAGAACTTGGAGAAATACCTGAAAATTTGGCTCTTGAGGTGTCATCTCCTGGTGCGGAGAGGTTGCTAAAGGTACCGGATCGATCTACAACGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF150

Protein Analysis

233

Amino Acids

25.66

Weight (kDa)

4.78

Isoelectric Point (pI)

63.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69210 AT1G69210
fragaria_vesca FvH4_4g29740 FvH4_4g29740 FvH4_4g29740
malus_domestica MD13G1060300.v1.1
prunus_persica Prupe.1G289100_v2.0.a1 Prupe.1G289100_v2.0.a1
pyrus_communis pycom13g05370
rosa_chinensis RchiOBHm_Chr4g0438001
rosa_laevigata RLG00000006395
rosa_multiflora Rmu_sc0007538.1_g000005
rosa_roxburghii Rroxscaffold_5G00379150
rosa_rugosa Rorug04G0306100 Rorug04G0306200
rosa_samantha Rh4AG357800 Rh4BG368700 Rh4CG382800 Rh4DG363600
rosa_wichuraiana Rw0G011490 Rw0G016180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 489
Acc65I GGTACC 1 cut(s) 673
AccB1I GGYRCC 1 cut(s) 673
AccBSI CCGCTC 1 cut(s) 412
AciI CCGC 3 cut(s) 216, 412, 656
AclWI GGATC 1 cut(s) 687
AcsI RAATTY 1 cut(s) 625
AfaI GTAC 2 cut(s) 30, 675
AfiI CCNNNNNNNGG 1 cut(s) 356
AgsI TTSAA 4 cut(s) 119, 302, 478, 560
AhdI GACNNNNNGTC 1 cut(s) 520
AjnI CCWGG 3 cut(s) 286, 541, 649
AluBI AGCT 3 cut(s) 51, 466, 599
AluI AGCT 3 cut(s) 51, 466, 599
Alw21I GWGCWC 1 cut(s) 46
Alw26I GTCTC 2 cut(s) 303, 502
AlwI GGATC 1 cut(s) 687
Ama87I CYCGRG 1 cut(s) 489
AoxI GGCC 1 cut(s) 22
ApeKI GCWGC 2 cut(s) 51, 218
ApoI RAATTY 1 cut(s) 625
Asp700I GAANNNNTTC 1 cut(s) 467
Asp718I GGTACC 1 cut(s) 673
AsuHPI GGTGA 2 cut(s) 302, 419
AsuII TTCGAA 1 cut(s) 450
AvaI CYCGRG 1 cut(s) 489
BanI GGYRCC 1 cut(s) 673
BanII GRGCYC 1 cut(s) 418
BauI CACGAG 1 cut(s) 429
Bbv12I GWGCWC 1 cut(s) 46
BbvI GCAGC 2 cut(s) 38, 205
BccI CCATC 3 cut(s) 314, 356, 365
BcgI CGANNNNNNTGC 2 cut(s) 26, 60
BciT130I CCWGG 3 cut(s) 288, 543, 651
BcoDI GTCTC 2 cut(s) 303, 502
BfaI CTAG 1 cut(s) 590
BisI GCNGC 2 cut(s) 52, 219
BlsI GCNGC 2 cut(s) 53, 220
Bme1390I CCNGG 3 cut(s) 288, 543, 651
BmeRI GACNNNNNGTC 1 cut(s) 520
BmeT110I CYCGRG 1 cut(s) 489
BmiI GGNNCC 2 cut(s) 17, 675
BmrFI CCNGG 3 cut(s) 288, 543, 651
BmsI GCATC 1 cut(s) 328
BpmI CTGGAG 1 cut(s) 621
Bpu14I TTCGAA 1 cut(s) 450
BpuEI CTTGAG 1 cut(s) 656
Bsa29I ATCGAT 1 cut(s) 682
BsaJI CCNNGG 3 cut(s) 19, 249, 401
BsaWI WCCGGW 1 cut(s) 676
BsaXI ACNNNNNCTCC 2 cut(s) 114, 144
Bsc4I CCNNNNNNNGG 1 cut(s) 356
Bse118I RCCGGY 1 cut(s) 341
Bse1I ACTGG 1 cut(s) 516
BseBI CCWGG 3 cut(s) 288, 543, 651
BseCI ATCGAT 1 cut(s) 682
BseDI CCNNGG 3 cut(s) 19, 249, 401
BseGI GGATG 4 cut(s) 101, 259, 267, 343
BseLI CCNNNNNNNGG 1 cut(s) 356
BseMII CTCAG 1 cut(s) 342
BseNI ACTGG 1 cut(s) 516
BseRI GAGGAG 7 cut(s) 25, 28, 52, 122, 147, 275, 477
BseXI GCAGC 2 cut(s) 38, 205
BseYI CCCAGC 1 cut(s) 324
BshFI GGCC 1 cut(s) 24
BshNI GGYRCC 1 cut(s) 673
BshVI ATCGAT 1 cut(s) 682
BsiHKAI GWGCWC 1 cut(s) 46
BsiHKCI CYCGRG 1 cut(s) 489
BsiSI CCGG 2 cut(s) 342, 677
BslFI GGGAC 1 cut(s) 383
BslI CCNNNNNNNGG 1 cut(s) 356
BsmAI GTCTC 2 cut(s) 303, 502
BsmFI GGGAC 1 cut(s) 383
BsnI GGCC 1 cut(s) 24
BsoBI CYCGRG 1 cut(s) 489
Bsp119I TTCGAA 1 cut(s) 450
Bsp1286I GDGCHC 2 cut(s) 46, 418
Bsp143I GATC 3 cut(s) 277, 679, 683
BspACI CCGC 3 cut(s) 216, 412, 656
BspANI GGCC 1 cut(s) 24
BspCNI CTCAG 1 cut(s) 343
BspDI ATCGAT 1 cut(s) 682
BspLI GGNNCC 2 cut(s) 17, 675
BspPI GGATC 1 cut(s) 687
BspQI GCTCTTC 2 cut(s) 228, 473
BspT104I TTCGAA 1 cut(s) 450
BspT107I GGYRCC 1 cut(s) 673
BsrBI CCGCTC 1 cut(s) 412
BsrFI RCCGGY 1 cut(s) 341
BsrI ACTGG 1 cut(s) 516
BssAI RCCGGY 1 cut(s) 341
BssECI CCNNGG 3 cut(s) 19, 249, 401
BssMI GATC 3 cut(s) 277, 679, 683
BssSI CACGAG 1 cut(s) 429
BssT1I CCWWGG 1 cut(s) 401
Bst2BI CACGAG 1 cut(s) 429
Bst2UI CCWGG 3 cut(s) 288, 543, 651
Bst4CI ACNGT 4 cut(s) 33, 41, 522, 694
Bst6I CTCTTC 6 cut(s) 70, 156, 228, 297, 327, 473
BstBI TTCGAA 1 cut(s) 450
BstC8I GCNNGC 3 cut(s) 343, 347, 414
BstDEI CTNAG 1 cut(s) 351
BstF5I GGATG 4 cut(s) 101, 259, 267, 343
BstKTI GATC 3 cut(s) 280, 682, 686
BstMAI GTCTC 2 cut(s) 303, 502
BstMBI GATC 3 cut(s) 277, 679, 683
BstMWI GCNNNNNNNGC 1 cut(s) 366
BstNI CCWGG 3 cut(s) 288, 543, 651
BstSCI CCNGG 3 cut(s) 286, 541, 649
BstV1I GCAGC 2 cut(s) 38, 205
Bsu15I ATCGAT 1 cut(s) 682
BsuRI GGCC 1 cut(s) 24
BsuTUI ATCGAT 1 cut(s) 682
BtgZI GCGATG 2 cut(s) 375, 384
BtsCI GGATG 4 cut(s) 101, 259, 267, 343
BtsIMutI CAGTG 2 cut(s) 46, 315
Cac8I GCNNGC 3 cut(s) 343, 347, 414
Cfr10I RCCGGY 1 cut(s) 341
ClaI ATCGAT 1 cut(s) 682
CseI GACGC 1 cut(s) 43
Csp6I GTAC 2 cut(s) 29, 674
CviAII CATG 1 cut(s) 547
CviQI GTAC 2 cut(s) 29, 674
DdeI CTNAG 1 cut(s) 351
DpnI GATC 3 cut(s) 279, 681, 685
DpnII GATC 3 cut(s) 277, 679, 683
DriI GACNNNNNGTC 1 cut(s) 520
Eam1104I CTCTTC 6 cut(s) 70, 156, 228, 297, 327, 473
Eam1105I GACNNNNNGTC 1 cut(s) 520
EarI CTCTTC 6 cut(s) 70, 156, 228, 297, 327, 473
Eco130I CCWWGG 1 cut(s) 401
Eco24I GRGCYC 1 cut(s) 418
Eco88I CYCGRG 1 cut(s) 489
EcoRII CCWGG 3 cut(s) 286, 541, 649
EcoT14I CCWWGG 1 cut(s) 401
EcoT38I GRGCYC 1 cut(s) 418
ErhI CCWWGG 1 cut(s) 401
FaeI CATG 1 cut(s) 550
FaiI YATR 6 cut(s) 139, 206, 498, 502, 504, 548
FalI AAGNNNNNCTT 2 cut(s) 76, 108
FaqI GGGAC 1 cut(s) 383
FatI CATG 1 cut(s) 546
FauI CCCGC 2 cut(s) 223, 405
Fnu4HI GCNGC 2 cut(s) 52, 219
FokI GGATG 4 cut(s) 88, 254, 266, 350
FriOI GRGCYC 1 cut(s) 418
Fsp4HI GCNGC 2 cut(s) 52, 219
FspBI CTAG 1 cut(s) 590
GluI GCNGC 2 cut(s) 52, 219
GsaI CCCAGC 1 cut(s) 328
GsuI CTGGAG 1 cut(s) 621
HaeIII GGCC 1 cut(s) 24
HapII CCGG 2 cut(s) 342, 677
HgaI GACGC 1 cut(s) 43
Hin1II CATG 1 cut(s) 550
HinfI GANTC 1 cut(s) 4
HpaII CCGG 2 cut(s) 342, 677
HphI GGTGA 2 cut(s) 302, 419
Hpy188I TCNGA 4 cut(s) 9, 48, 83, 250
Hpy188III TCNNGA 4 cut(s) 431, 478, 572, 635
Hpy99I CGWCG 2 cut(s) 59, 79
HpyCH4III ACNGT 4 cut(s) 33, 41, 522, 694
HpyF10VI GCNNNNNNNGC 1 cut(s) 366
HpyF3I CTNAG 1 cut(s) 351
Hsp92II CATG 1 cut(s) 550
KpnI GGTACC 1 cut(s) 677
KroI GCCGGC 1 cut(s) 341
KroNI GCCGGC 1 cut(s) 343
Kzo9I GATC 3 cut(s) 277, 679, 683
LguI GCTCTTC 2 cut(s) 228, 473
LmnI GCTCC 2 cut(s) 15, 48
Lsp1109I GCAGC 2 cut(s) 38, 205
LweI GCATC 1 cut(s) 328
MaeI CTAG 1 cut(s) 590
MaeIII GTNAC 1 cut(s) 290
MalI GATC 3 cut(s) 279, 681, 685
MbiI CCGCTC 1 cut(s) 412
MboI GATC 3 cut(s) 277, 679, 683
MboII GAAGA 9 cut(s) 57, 60, 143, 159, 215, 314, 344, 460, 464
MhlI GDGCHC 2 cut(s) 46, 418
MluCI AATT 3 cut(s) 297, 446, 625
MroNI GCCGGC 1 cut(s) 341
MroXI GAANNNNTTC 1 cut(s) 467
MseI TTAA 2 cut(s) 189, 440
MspA1I CMGCKG 1 cut(s) 218
MspI CCGG 2 cut(s) 342, 677
MspR9I CCNGG 3 cut(s) 288, 543, 651
MvaI CCWGG 3 cut(s) 288, 543, 651
MwoI GCNNNNNNNGC 1 cut(s) 366
NaeI GCCGGC 1 cut(s) 343
NdeII GATC 3 cut(s) 277, 679, 683
NgoMIV GCCGGC 1 cut(s) 341
NlaIII CATG 1 cut(s) 550
NlaIV GGNNCC 2 cut(s) 17, 675
NmuCI GTSAC 1 cut(s) 290
NspV TTCGAA 1 cut(s) 450
PaeR7I CTCGAG 1 cut(s) 489
PciSI GCTCTTC 2 cut(s) 228, 473
PdiI GCCGGC 1 cut(s) 343
PdmI GAANNNNTTC 1 cut(s) 467
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 2 cut(s) 53, 220
Psp6I CCWGG 3 cut(s) 286, 541, 649
PspFI CCCAGC 1 cut(s) 324
PspGI CCWGG 3 cut(s) 286, 541, 649
PspN4I GGNNCC 2 cut(s) 17, 675
PspXI VCTCGAGB 1 cut(s) 489
RsaI GTAC 2 cut(s) 30, 675
RsaNI GTAC 2 cut(s) 29, 674
SapI GCTCTTC 2 cut(s) 228, 473
SaqAI TTAA 2 cut(s) 189, 440
SatI GCNGC 2 cut(s) 52, 219
Sau3AI GATC 3 cut(s) 277, 679, 683
ScrFI CCNGG 3 cut(s) 288, 543, 651
SduI GDGCHC 2 cut(s) 46, 418
SetI ASST 9 cut(s) 53, 151, 438, 468, 601, 622, 642, 665, 675
SfaNI GCATC 1 cut(s) 328
Sfr274I CTCGAG 1 cut(s) 489
SfuI TTCGAA 1 cut(s) 450
SlaI CTCGAG 1 cut(s) 489
SmlI CTYRAG 2 cut(s) 489, 635
SmoI CTYRAG 2 cut(s) 489, 635
Sse9I AATT 3 cut(s) 297, 446, 625
SsiI CCGC 3 cut(s) 216, 412, 656
SspMI CTAG 1 cut(s) 590
StyD4I CCNGG 3 cut(s) 286, 541, 649
StyI CCWWGG 1 cut(s) 401
TaaI ACNGT 4 cut(s) 33, 41, 522, 694
TaqI TCGA 3 cut(s) 450, 490, 682
TasI AATT 3 cut(s) 297, 446, 625
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 2 cut(s) 189, 440
Tru9I TTAA 2 cut(s) 189, 440
TscAI CASTG 2 cut(s) 46, 322
TseFI GTSAC 1 cut(s) 290
TseI GCWGC 2 cut(s) 51, 218
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 1 cut(s) 609
TspGWI ACGGA 1 cut(s) 63
TspRI CASTG 2 cut(s) 46, 322
XapI RAATTY 1 cut(s) 625
XhoI CTCGAG 1 cut(s) 489
XmnI GAANNNNTTC 1 cut(s) 467
XspI CTAG 1 cut(s) 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.