pycom13g05990

Protein UXT homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0008665
Physical Location & Seq
Forward (+)
3932271 .. 3934315
2045 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 627 bp
ATGAAGACGTTTTGGGCTTGGGCCTACCCAAATCGGGGACGCCTTATACGACGTCGTTGGATCAAAGCCTATCATCCCTCCAGCTGCATCGTCGTTTACCTCCAGAGACCGACTTTCTGTGTGCAGAGAAGCAAGCGAGCTCTGCAAATCCAGTCCAGTCTAGCGCTCATGGACATCTCCCGCCAAAAAAAAATTCAGAAATTCGAGGAGTTCGTCGACCAACGCCTCAAACCAGACCTCGTCCGCGCCATTGCTCAACGGGACAAGGTGTTCGAGCAACAAAAAGTTTTCTCGGATTTGCGGAAGAACATTGAGAATTTGGAGAAAAATAGTGTGACCAGTCTTAGGACTTTGGTTAATCTTGGCTCTGAAGTTTATATGCAAGCTGACGTGCCAGATACACGACGCATATTTGTAGATATTGGACTAGGATTTCATGTGGAGTTCACCTGGTCTGAAGCTTTAAATTACATATCTCAAAGAGAAGAAAAGTTAGCCAGGCAAGTTGAAGAGTGTACTAACCTTATTGCATCAATTAAAGCTCAGATAAAGCTGGTCTGCGAAGGGATTCGAGAATTGCTCCAGCTTCCAGCAGAAGCAAAAACTGCCTCAGAGCGCATTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prefoldin

Protein Analysis

209

Amino Acids

24.41

Weight (kDa)

9.69

Isoelectric Point (pI)

52.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prefoldin PF02996 85 - 187 1e-20 Prefoldin subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 55
AccI GTMKAC 1 cut(s) 216
AccII CGCG 1 cut(s) 246
AciI CCGC 3 cut(s) 181, 244, 301
AclWI GGATC 1 cut(s) 68
AcsI RAATTY 3 cut(s) 192, 200, 316
AcuI CTGAAG 2 cut(s) 390, 477
AcyI GRCGYC 2 cut(s) 40, 52
AfaI GTAC 1 cut(s) 517
AfeI AGCGCT 1 cut(s) 165
AfiI CCNNNNNNNGG 3 cut(s) 34, 35, 345
AgsI TTSAA 1 cut(s) 509
AjiI CACGTC 1 cut(s) 391
AjnI CCWGG 2 cut(s) 449, 497
AjuI GAANNNNNNNTTGG 2 cut(s) 177, 209
AloI GAACNNNNNNTCC 2 cut(s) 254, 286
AluBI AGCT 7 cut(s) 84, 140, 386, 461, 542, 553, 586
AluI AGCT 7 cut(s) 84, 140, 386, 461, 542, 553, 586
Alw21I GWGCWC 1 cut(s) 142
Alw26I GTCTC 1 cut(s) 100
AlwI GGATC 1 cut(s) 68
Aor51HI AGCGCT 1 cut(s) 165
AoxI GGCC 1 cut(s) 21
ApeKI GCWGC 1 cut(s) 84
ApoI RAATTY 3 cut(s) 192, 200, 316
ArsI GACNNNNNNTTYG 2 cut(s) 254, 286
Asp700I GAANNNNTTC 1 cut(s) 567
AspLEI GCGC 3 cut(s) 166, 248, 618
AspS9I GGNCC 1 cut(s) 21
AsuHPI GGTGA 1 cut(s) 439
BanII GRGCYC 1 cut(s) 142
BbsI GAAGAC 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 142
BbvI GCAGC 1 cut(s) 71
BciT130I CCWGG 2 cut(s) 451, 499
BcoDI GTCTC 1 cut(s) 100
BfaI CTAG 2 cut(s) 161, 428
BfoI RGCGCY 1 cut(s) 167
BisI GCNGC 1 cut(s) 85
BlsI GCNGC 1 cut(s) 86
Bme1390I CCNGG 2 cut(s) 451, 499
BmgBI CACGTC 1 cut(s) 391
BmgT120I GGNCC 1 cut(s) 21
BmrFI CCNGG 2 cut(s) 451, 499
BmsI GCATC 2 cut(s) 96, 539
BpiI GAAGAC 1 cut(s) 11
BplI GAGNNNNNCTC 2 cut(s) 564, 596
BpmI CTGGAG 3 cut(s) 64, 86, 566
BsaHI GRCGYC 2 cut(s) 40, 52
BsaI GGTCTC 1 cut(s) 100
Bsc4I CCNNNNNNNGG 3 cut(s) 34, 35, 345
Bse1I ACTGG 3 cut(s) 151, 156, 339
Bse3DI GCAATG 1 cut(s) 249
BseBI CCWGG 2 cut(s) 451, 499
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 3 cut(s) 34, 35, 345
BseMI GCAATG 1 cut(s) 249
BseMII CTCAG 2 cut(s) 557, 624
BseNI ACTGG 3 cut(s) 151, 156, 339
BseRI GAGGAG 1 cut(s) 221
BseXI GCAGC 1 cut(s) 71
BsgI GTGCAG 1 cut(s) 143
Bsh1236I CGCG 1 cut(s) 246
BshFI GGCC 1 cut(s) 23
BsiHKAI GWGCWC 1 cut(s) 142
BslFI GGGAC 2 cut(s) 51, 275
BslI CCNNNNNNNGG 3 cut(s) 34, 35, 345
BsmAI GTCTC 1 cut(s) 100
BsmFI GGGAC 2 cut(s) 51, 275
BsnI GGCC 1 cut(s) 23
Bso31I GGTCTC 1 cut(s) 100
Bsp1286I GDGCHC 1 cut(s) 142
Bsp143I GATC 1 cut(s) 60
BspACI CCGC 3 cut(s) 181, 244, 301
BspANI GGCC 1 cut(s) 23
BspCNI CTCAG 2 cut(s) 556, 623
BspFNI CGCG 1 cut(s) 246
BspPI GGATC 1 cut(s) 68
BspTNI GGTCTC 1 cut(s) 100
BsrDI GCAATG 1 cut(s) 249
BsrI ACTGG 3 cut(s) 151, 156, 339
BssMI GATC 1 cut(s) 60
BssNI GRCGYC 2 cut(s) 40, 52
Bst2UI CCWGG 2 cut(s) 451, 499
Bst6I CTCTTC 1 cut(s) 504
BstACI GRCGYC 2 cut(s) 40, 52
BstAPI GCANNNNNTGC 1 cut(s) 605
BstC8I GCNNGC 3 cut(s) 134, 138, 384
BstDEI CTNAG 3 cut(s) 344, 543, 610
BstF5I GGATG 1 cut(s) 73
BstFNI CGCG 1 cut(s) 246
BstH2I RGCGCY 1 cut(s) 167
BstHHI GCGC 3 cut(s) 166, 248, 618
BstKTI GATC 1 cut(s) 63
BstMAI GTCTC 1 cut(s) 100
BstMBI GATC 1 cut(s) 60
BstMWI GCNNNNNNNGC 2 cut(s) 142, 605
BstNI CCWGG 2 cut(s) 451, 499
BstSCI CCNGG 2 cut(s) 449, 497
BstUI CGCG 1 cut(s) 246
BstV1I GCAGC 1 cut(s) 71
BstV2I GAAGAC 1 cut(s) 11
BsuRI GGCC 1 cut(s) 23
BtrI CACGTC 1 cut(s) 391
BtsCI GGATG 1 cut(s) 73
Cac8I GCNNGC 3 cut(s) 134, 138, 384
CfoI GCGC 3 cut(s) 166, 248, 618
Cfr13I GGNCC 1 cut(s) 21
CseI GACGC 2 cut(s) 48, 414
CsiI ACCWGGT 1 cut(s) 449
Csp6I GTAC 1 cut(s) 516
CviAII CATG 2 cut(s) 169, 437
CviQI GTAC 1 cut(s) 516
DdeI CTNAG 3 cut(s) 344, 543, 610
DpnI GATC 1 cut(s) 62
DpnII GATC 1 cut(s) 60
DraI TTTAAA 1 cut(s) 465
Eam1104I CTCTTC 1 cut(s) 504
EarI CTCTTC 1 cut(s) 504
Ecl136II GAGCTC 1 cut(s) 140
Eco24I GRGCYC 1 cut(s) 142
Eco31I GGTCTC 1 cut(s) 100
Eco47III AGCGCT 1 cut(s) 165
Eco53kI GAGCTC 1 cut(s) 140
Eco57I CTGAAG 2 cut(s) 390, 477
EcoICRI GAGCTC 1 cut(s) 140
EcoRII CCWGG 2 cut(s) 449, 497
EcoT38I GRGCYC 1 cut(s) 142
FaeI CATG 2 cut(s) 172, 440
FaiI YATR 7 cut(s) 47, 170, 378, 380, 410, 438, 473
FaqI GGGAC 2 cut(s) 51, 275
FatI CATG 2 cut(s) 168, 436
FauI CCCGC 1 cut(s) 188
FblI GTMKAC 1 cut(s) 216
Fnu4HI GCNGC 1 cut(s) 85
FokI GGATG 1 cut(s) 60
FriOI GRGCYC 1 cut(s) 142
Fsp4HI GCNGC 1 cut(s) 85
FspBI CTAG 2 cut(s) 161, 428
GlaI GCGC 3 cut(s) 165, 247, 617
GluI GCNGC 1 cut(s) 85
GsuI CTGGAG 3 cut(s) 64, 86, 566
HaeII RGCGCY 1 cut(s) 167
HaeIII GGCC 1 cut(s) 23
HgaI GACGC 2 cut(s) 48, 414
HhaI GCGC 3 cut(s) 166, 248, 618
Hin1I GRCGYC 2 cut(s) 40, 52
Hin1II CATG 2 cut(s) 172, 440
Hin6I GCGC 3 cut(s) 164, 246, 616
HinP1I GCGC 3 cut(s) 164, 246, 616
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HindIII AAGCTT 1 cut(s) 459
HinfI GANTC 1 cut(s) 568
HphI GGTGA 1 cut(s) 439
Hpy166II GTNNAC 4 cut(s) 97, 217, 447, 516
Hpy188I TCNGA 6 cut(s) 198, 295, 370, 457, 546, 613
Hpy188III TCNNGA 2 cut(s) 103, 572
Hpy8I GTNNAC 4 cut(s) 97, 217, 447, 516
Hpy99I CGWCG 5 cut(s) 54, 57, 95, 218, 408
HpyAV CCTTC 1 cut(s) 557
HpyCH4IV ACGT 3 cut(s) 8, 52, 390
HpyCH4V TGCA 5 cut(s) 87, 124, 145, 382, 530
HpyF10VI GCNNNNNNNGC 2 cut(s) 142, 605
HpyF3I CTNAG 3 cut(s) 344, 543, 610
HpySE526I ACGT 3 cut(s) 8, 52, 390
Hsp92I GRCGYC 2 cut(s) 40, 52
Hsp92II CATG 2 cut(s) 172, 440
HspAI GCGC 3 cut(s) 164, 246, 616
Kzo9I GATC 1 cut(s) 60
LmnI GCTCC 1 cut(s) 585
Lsp1109I GCAGC 1 cut(s) 71
LweI GCATC 2 cut(s) 96, 539
MabI ACCWGGT 1 cut(s) 449
MaeI CTAG 2 cut(s) 161, 428
MaeII ACGT 3 cut(s) 8, 52, 390
MaeIII GTNAC 1 cut(s) 334
MalI GATC 1 cut(s) 62
MboI GATC 1 cut(s) 60
MboII GAAGA 4 cut(s) 16, 316, 497, 521
MhlI GDGCHC 1 cut(s) 142
MluCI AATT 6 cut(s) 192, 200, 316, 466, 534, 575
MmeI TCCRAC 1 cut(s) 38
MnlI CCTC 6 cut(s) 88, 110, 199, 236, 248, 619
MroXI GAANNNNTTC 1 cut(s) 567
MseI TTAA 3 cut(s) 357, 464, 537
MspA1I CMGCKG 1 cut(s) 84
MspR9I CCNGG 2 cut(s) 451, 499
MvaI CCWGG 2 cut(s) 451, 499
MvnI CGCG 1 cut(s) 246
MwoI GCNNNNNNNGC 2 cut(s) 142, 605
NdeII GATC 1 cut(s) 60
NlaIII CATG 2 cut(s) 172, 440
NmuCI GTSAC 1 cut(s) 334
PcsI WCGNNNNNNNCGW 2 cut(s) 46, 210
PdmI GAANNNNTTC 1 cut(s) 567
PfeI GAWTC 1 cut(s) 568
PflFI GACNNNGTC 1 cut(s) 239
PkrI GCNGC 1 cut(s) 86
Psp124BI GAGCTC 1 cut(s) 142
Psp6I CCWGG 2 cut(s) 449, 497
PspGI CCWGG 2 cut(s) 449, 497
PspPI GGNCC 1 cut(s) 21
PsyI GACNNNGTC 1 cut(s) 239
PvuII CAGCTG 1 cut(s) 84
RsaI GTAC 1 cut(s) 517
RsaNI GTAC 1 cut(s) 516
SacI GAGCTC 1 cut(s) 142
SalI GTCGAC 1 cut(s) 215
SaqAI TTAA 3 cut(s) 357, 464, 537
SatI GCNGC 1 cut(s) 85
Sau3AI GATC 1 cut(s) 60
Sau96I GGNCC 1 cut(s) 21
ScrFI CCNGG 2 cut(s) 451, 499
SduI GDGCHC 1 cut(s) 142
SexAI ACCWGGT 1 cut(s) 449
SfaNI GCATC 2 cut(s) 96, 539
Sse9I AATT 6 cut(s) 192, 200, 316, 466, 534, 575
SsiI CCGC 3 cut(s) 181, 244, 301
SspMI CTAG 2 cut(s) 161, 428
SstI GAGCTC 1 cut(s) 142
StyD4I CCNGG 2 cut(s) 449, 497
TaiI ACGT 3 cut(s) 11, 55, 393
TaqI TCGA 4 cut(s) 204, 216, 273, 571
TaqII GACCGA 1 cut(s) 124
TasI AATT 6 cut(s) 192, 200, 316, 466, 534, 575
TatI WGTACW 1 cut(s) 515
TfiI GAWTC 1 cut(s) 568
Tru1I TTAA 3 cut(s) 357, 464, 537
Tru9I TTAA 3 cut(s) 357, 464, 537
TseFI GTSAC 1 cut(s) 334
TseI GCWGC 1 cut(s) 84
Tsp45I GTSAC 1 cut(s) 334
TspDTI ATGAA 2 cut(s) 17, 425
Tth111I GACNNNGTC 1 cut(s) 239
XapI RAATTY 3 cut(s) 192, 200, 316
XmiI GTMKAC 1 cut(s) 216
XmnI GAANNNNTTC 1 cut(s) 567
XspI CTAG 2 cut(s) 161, 428
ZraI GACGTC 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.