Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0002890

Physical Location & Seq

Genomic Coordinates Reverse (-)

4085597 .. 4088914

Gene Structure 3318 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGGAAGGGTAAAGCTAAAGATTAAGAGGTTGGAGAATACAAATGGGCGTCAAGCAACTTATGCGAAAAGGAAGAATGGCATCATGAAAAAGGCTAATGAATTATCTATACTATGCGACATTGACATTATCCTTCTCATGTTTTCGCCTACCGGAAAGCCTTCTTTGTGCTGTGGCAAACGCAGTATTGAAGACGTTATAGCAAAGTTTGCTCAACTTACTCCACAGGAAAGAGCTAAAAGGAAATTGGAAAGCCTCGAAGCACTGAAGAAAACGTTCAAGAAGTTGGATCATGACGTTAATATACAAGAATTTTTGGGTACAAGTTCTCAAACGATTGAGGATCTGAGTAACCAGTCTAGTTTATTGCAAACCCAGCTTTCCGAAATAAAAAAGAGACTAAGCTGTTGGACTAGCCCTGATAAGATCAACAGTGTAGAACAGTTGGGGCATATGGAAGATTCACTTAGAGAATCGCTTAACCAGATTCGAATACATAAGGAAAATTTACAAAAGCAGCAGCTTATGTCGATAAAATGCACTAGTCAGTTCCAAAATGGGTTGCATATACCCTTCAGCATGAATGCTGAGCAGCAGCTCCAGCCTTTGTCATGGATTCCGACTAATGAAAGCCGACATATAGTTTTACCTGAGGACACGACCTTGCTTCCCCATAGGGATCTGGAATGCTCAGCAAGTTCCTCCTTTGGTAGTTATTCTGGTTACCTTGGCACAGGAAAAAGTCCAGAGATTTCTACTTCTGGACAAGAAAATGGTATTCTAAATGACTTAACCAGAACCGCACCGCTGAATCTACAGCTGGGTGGGCACATTCCCTATCTTCCGTACAATCTCAATATGCTGACTGATACGAAATTCCAGCCACCGGCAGAAATGAGTCCTCAAGAAAACCCTGTTGAGTATCAAGTTAATGGAAGCTTTGAAGCTCCTAGACCTGAGTTTTACCCCACTCAGCATAATTGGGCTTCTACATCTGGTCCTTGTGCGGTTACCATGTTTGACGAGCATTTATATTCCCAGACAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

350

Amino Acids

39.35

Weight (kDa)

7.11

Isoelectric Point (pI)

59.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 54	3.8e-20	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18750 AT1G18750 AT1G18750 AT1G18750 AT1G18750 AT1G18750 AT2G03060 AT2G03060 AT2G03060 AT2G03060 AT2G03060 AT2G03060 AT2G03060
fragaria_vesca	FvH4_4g31160 FvH4_4g31160
malus_domestica	MD13G1070300.v1.1 MD16G1070700.v1.1
prunus_persica	Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1 Prupe.1G276600_v2.0.a1
pyrus_communis	pycom13g06310 pycom16g06150
rosa_chinensis	RchiOBHm_Chr4g0439551
rosa_laevigata	RLG00000006259
rosa_multiflora	Rmu_sc0007276.1_g000014
rosa_roxburghii	Rroxscaffold_5G00380470
rosa_rugosa	Rorug04G0319500 Rorug04G0319600 Rorug04G0319700 Rorug04G0319800.1
rosa_samantha	Rh4AG370700 Rh4BG382500 Rh4CG397100 Rh4DG377300
rosa_wichuraiana	Rw4G031600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	801, 806, 1007
AclI	AACGTT	1 cut(s)	275
AclWI	GGATC	3 cut(s)	297, 351, 687
AcsI	RAATTY	3 cut(s)	311, 505, 875
AcuI	CTGAAG	2 cut(s)	287, 559
AcyI	GRCGYC	1 cut(s)	49
AfaI	GTAC	2 cut(s)	322, 848
AfiI	CCNNNNNNNGG	1 cut(s)	886
AgsI	TTSAA	3 cut(s)	191, 280, 944
AhlI	ACTAGT	1 cut(s)	542
AluBI	AGCT	9 cut(s)	16, 236, 379, 405, 523, 598, 820, 939, 947
AluI	AGCT	9 cut(s)	16, 236, 379, 405, 523, 598, 820, 939, 947
Alw26I	GTCTC	1 cut(s)	391
AlwI	GGATC	3 cut(s)	297, 351, 687
ApeKI	GCWGC	4 cut(s)	517, 520, 592, 595
ApoI	RAATTY	3 cut(s)	311, 505, 875
Asp700I	GAANNNNTTC	2 cut(s)	160, 275
AspS9I	GGNCC	1 cut(s)	998
AsuII	TTCGAA	1 cut(s)	490
AvaII	GGWCC	1 cut(s)	998
AxyI	CCTNAGG	1 cut(s)	651
BaeGI	GKGCMC	1 cut(s)	831
BbsI	GAAGAC	1 cut(s)	198
BbvI	GCAGC	4 cut(s)	529, 532, 604, 607
BcoDI	GTCTC	1 cut(s)	391
BcuI	ACTAGT	1 cut(s)	542
BfaI	CTAG	4 cut(s)	360, 414, 543, 951
BfmI	CTRYAG	1 cut(s)	815
BisI	GCNGC	4 cut(s)	518, 521, 593, 596
BlpI	GCTNAGC	2 cut(s)	588, 691
BlsI	GCNGC	4 cut(s)	519, 522, 594, 597
Bme18I	GGWCC	1 cut(s)	998
BmgT120I	GGNCC	1 cut(s)	998
BmsI	GCATC	1 cut(s)	90
BpiI	GAAGAC	1 cut(s)	198
BpmI	CTGGAG	1 cut(s)	584
Bpu1102I	GCTNAGC	2 cut(s)	588, 691
Bpu14I	TTCGAA	1 cut(s)	490
BpuEI	CTTGAG	1 cut(s)	888
BsaHI	GRCGYC	1 cut(s)	49
BsaJI	CCNNGG	1 cut(s)	727
BsaWI	WCCGGW	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	1 cut(s)	886
Bse118I	RCCGGY	1 cut(s)	886
Bse1I	ACTGG	1 cut(s)	355
Bse21I	CCTNAGG	1 cut(s)	651
BseDI	CCNNGG	1 cut(s)	727
BseLI	CCNNNNNNNGG	1 cut(s)	886
BseMII	CTCAG	6 cut(s)	338, 579, 642, 705, 948, 986
BseNI	ACTGG	1 cut(s)	355
BseSI	GKGCMC	1 cut(s)	831
BseXI	GCAGC	4 cut(s)	529, 532, 604, 607
BseYI	CCCAGC	2 cut(s)	375, 820
BsiSI	CCGG	2 cut(s)	153, 887
BslI	CCNNNNNNNGG	1 cut(s)	886
BsmAI	GTCTC	1 cut(s)	391
BsmI	GAATGC	2 cut(s)	589, 692
Bsp119I	TTCGAA	1 cut(s)	490
Bsp1286I	GDGCHC	1 cut(s)	831
Bsp143I	GATC	4 cut(s)	289, 343, 426, 679
Bsp1720I	GCTNAGC	2 cut(s)	588, 691
BspACI	CCGC	3 cut(s)	801, 806, 1007
BspCNI	CTCAG	6 cut(s)	339, 580, 643, 704, 949, 985
BspHI	TCATGA	2 cut(s)	84, 292
BspPI	GGATC	3 cut(s)	297, 351, 687
BspT104I	TTCGAA	1 cut(s)	490
BsrFI	RCCGGY	1 cut(s)	886
BsrI	ACTGG	1 cut(s)	355
BssAI	RCCGGY	1 cut(s)	886
BssECI	CCNNGG	1 cut(s)	727
BssMI	GATC	4 cut(s)	289, 343, 426, 679
BssNI	GRCGYC	1 cut(s)	49
BssT1I	CCWWGG	1 cut(s)	727
Bst4CI	ACNGT	2 cut(s)	434, 444
BstACI	GRCGYC	1 cut(s)	49
BstAPI	GCANNNNNTGC	2 cut(s)	62, 209
BstBI	TTCGAA	1 cut(s)	490
BstDEI	CTNAG	8 cut(s)	347, 401, 467, 588, 651, 691, 957, 972
BstEII	GGTNACC	2 cut(s)	722, 1009
BstKTI	GATC	4 cut(s)	292, 346, 429, 682
BstMAI	GTCTC	1 cut(s)	391
BstMBI	GATC	4 cut(s)	289, 343, 426, 679
BstMWI	GCNNNNNNNGC	5 cut(s)	62, 209, 376, 601, 826
BstPI	GGTNACC	2 cut(s)	722, 1009
BstSFI	CTRYAG	1 cut(s)	815
BstSLI	GKGCMC	1 cut(s)	831
BstV1I	GCAGC	4 cut(s)	529, 532, 604, 607
BstV2I	GAAGAC	1 cut(s)	198
BstX2I	RGATCY	2 cut(s)	343, 679
BstYI	RGATCY	2 cut(s)	343, 679
Bsu36I	CCTNAGG	1 cut(s)	651
BtsIMutI	CAGTG	2 cut(s)	263, 439
CciI	TCATGA	2 cut(s)	84, 292
Cfr10I	RCCGGY	1 cut(s)	886
Cfr13I	GGNCC	1 cut(s)	998
CseI	GACGC	1 cut(s)	38
Csp6I	GTAC	2 cut(s)	321, 847
CviAII	CATG	6 cut(s)	85, 139, 293, 580, 612, 1015
CviQI	GTAC	2 cut(s)	321, 847
DdeI	CTNAG	8 cut(s)	347, 401, 467, 588, 651, 691, 957, 972
DpnI	GATC	4 cut(s)	291, 345, 428, 681
DpnII	GATC	4 cut(s)	289, 343, 426, 679
Eco130I	CCWWGG	1 cut(s)	727
Eco47I	GGWCC	1 cut(s)	998
Eco57I	CTGAAG	2 cut(s)	287, 559
Eco81I	CCTNAGG	1 cut(s)	651
Eco91I	GGTNACC	2 cut(s)	722, 1009
EcoO65I	GGTNACC	2 cut(s)	722, 1009
EcoT14I	CCWWGG	1 cut(s)	727
ErhI	CCWWGG	1 cut(s)	727
FaeI	CATG	6 cut(s)	88, 142, 296, 583, 615, 1018
FalI	AAGNNNNNCTT	2 cut(s)	450, 482
FatI	CATG	6 cut(s)	84, 138, 292, 579, 611, 1014
FauNDI	CATATG	1 cut(s)	453
Fnu4HI	GCNGC	4 cut(s)	518, 521, 593, 596
Fsp4HI	GCNGC	4 cut(s)	518, 521, 593, 596
FspBI	CTAG	4 cut(s)	360, 414, 543, 951
GluI	GCNGC	4 cut(s)	518, 521, 593, 596
GsaI	CCCAGC	2 cut(s)	379, 824
GsuI	CTGGAG	1 cut(s)	584
HapII	CCGG	2 cut(s)	153, 887
HgaI	GACGC	1 cut(s)	38
Hin1I	GRCGYC	1 cut(s)	49
Hin1II	CATG	6 cut(s)	88, 142, 296, 583, 615, 1018
HindIII	AAGCTT	1 cut(s)	937
HinfI	GANTC	6 cut(s)	461, 473, 487, 616, 811, 898
HpaII	CCGG	2 cut(s)	153, 887
Hpy188I	TCNGA	3 cut(s)	348, 385, 621
Hpy188III	TCNNGA	7 cut(s)	85, 280, 293, 683, 746, 762, 905
HpyAV	CCTTC	3 cut(s)	143, 171, 583
HpyCH4III	ACNGT	2 cut(s)	434, 444
HpyCH4IV	ACGT	3 cut(s)	195, 275, 297
HpyCH4V	TGCA	3 cut(s)	370, 540, 565
HpyF10VI	GCNNNNNNNGC	5 cut(s)	62, 209, 376, 601, 826
HpyF3I	CTNAG	8 cut(s)	347, 401, 467, 588, 651, 691, 957, 972
HpySE526I	ACGT	3 cut(s)	195, 275, 297
Hsp92I	GRCGYC	1 cut(s)	49
Hsp92II	CATG	6 cut(s)	88, 142, 296, 583, 615, 1018
Kzo9I	GATC	4 cut(s)	289, 343, 426, 679
LmnI	GCTCC	2 cut(s)	603, 952
Lsp1109I	GCAGC	4 cut(s)	529, 532, 604, 607
LweI	GCATC	1 cut(s)	90
MaeI	CTAG	4 cut(s)	360, 414, 543, 951
MaeII	ACGT	3 cut(s)	195, 275, 297
MaeIII	GTNAC	3 cut(s)	350, 722, 1009
MalI	GATC	4 cut(s)	291, 345, 428, 681
MboI	GATC	4 cut(s)	289, 343, 426, 679
MboII	GAAGA	5 cut(s)	85, 203, 280, 470, 833
MflI	RGATCY	2 cut(s)	343, 679
MhlI	GDGCHC	1 cut(s)	831
MluCI	AATT	6 cut(s)	101, 245, 311, 505, 875, 979
MlyI	GAGTC	1 cut(s)	907
MmeI	TCCRAC	4 cut(s)	12, 267, 389, 644
MnlI	CCTC	6 cut(s)	21, 266, 334, 646, 712, 912
MroXI	GAANNNNTTC	2 cut(s)	160, 275
MseI	TTAA	5 cut(s)	24, 300, 480, 791, 930
MspA1I	CMGCKG	2 cut(s)	808, 820
MspI	CCGG	2 cut(s)	153, 887
Mva1269I	GAATGC	2 cut(s)	589, 692
MwoI	GCNNNNNNNGC	5 cut(s)	62, 209, 376, 601, 826
NdeI	CATATG	1 cut(s)	453
NdeII	GATC	4 cut(s)	289, 343, 426, 679
NlaIII	CATG	6 cut(s)	88, 142, 296, 583, 615, 1018
NspV	TTCGAA	1 cut(s)	490
PagI	TCATGA	2 cut(s)	84, 292
PctI	GAATGC	2 cut(s)	589, 692
PdmI	GAANNNNTTC	2 cut(s)	160, 275
PfeI	GAWTC	5 cut(s)	461, 473, 487, 616, 811
PkrI	GCNGC	4 cut(s)	519, 522, 594, 597
PleI	GAGTC	1 cut(s)	906
PpsI	GAGTC	1 cut(s)	906
Psp1406I	AACGTT	1 cut(s)	275
PspEI	GGTNACC	2 cut(s)	722, 1009
PspFI	CCCAGC	2 cut(s)	375, 820
PspPI	GGNCC	1 cut(s)	998
PsuI	RGATCY	2 cut(s)	343, 679
PvuII	CAGCTG	1 cut(s)	820
RsaI	GTAC	2 cut(s)	322, 848
RsaNI	GTAC	2 cut(s)	321, 847
SaqAI	TTAA	5 cut(s)	24, 300, 480, 791, 930
SatI	GCNGC	4 cut(s)	518, 521, 593, 596
Sau3AI	GATC	4 cut(s)	289, 343, 426, 679
Sau96I	GGNCC	1 cut(s)	998
SchI	GAGTC	1 cut(s)	907
SduI	GDGCHC	1 cut(s)	831
SfaNI	GCATC	1 cut(s)	90
SfcI	CTRYAG	1 cut(s)	815
SfuI	TTCGAA	1 cut(s)	490
SinI	GGWCC	1 cut(s)	998
SmlI	CTYRAG	1 cut(s)	903
SmoI	CTYRAG	1 cut(s)	903
SpeI	ACTAGT	1 cut(s)	542
Sse9I	AATT	6 cut(s)	101, 245, 311, 505, 875, 979
SsiI	CCGC	3 cut(s)	801, 806, 1007
SspMI	CTAG	4 cut(s)	360, 414, 543, 951
StyI	CCWWGG	1 cut(s)	727
TaaI	ACNGT	2 cut(s)	434, 444
TaiI	ACGT	3 cut(s)	198, 278, 300
TaqI	TCGA	3 cut(s)	258, 490, 530
TasI	AATT	6 cut(s)	101, 245, 311, 505, 875, 979
TfiI	GAWTC	5 cut(s)	461, 473, 487, 616, 811
Tru1I	TTAA	5 cut(s)	24, 300, 480, 791, 930
Tru9I	TTAA	5 cut(s)	24, 300, 480, 791, 930
TscAI	CASTG	2 cut(s)	270, 439
TseI	GCWGC	4 cut(s)	517, 520, 592, 595
TspDTI	ATGAA	4 cut(s)	101, 114, 596, 642
TspGWI	ACGGA	1 cut(s)	834
TspRI	CASTG	2 cut(s)	270, 439
VpaK11BI	GGWCC	1 cut(s)	998
XapI	RAATTY	3 cut(s)	311, 505, 875
XmnI	GAANNNNTTC	2 cut(s)	160, 275
XspI	CTAG	4 cut(s)	360, 414, 543, 951

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.