pycom13g07700
MYB Family

bHLH-MYC and R2R3-MYB transcription factors N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0012163
Physical Location & Seq
Forward (+)
5090560 .. 5092162
1603 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 897 bp
ATGTATAGCAACTTAAGCGATCAATTTCAACAATACAATGGCCTGCAACCTGAGCTTTTCTTCAAGATGTCCCATGAGATCTACAACTATGGAGAAGGGTTGATCGGGAAAGTGGCGGCAGATCATGGTCATAAGTGGATACACAAAGAACCAAATGATCAAGAAATCAACTTCTTATCAGGATGGCATAACTCAGCAGACATGCAACCTAGAACATGGGAAGCCCAATTCCAGTCTGGCATAAAGACCATAGCCCTGATAGCAGTTAGAGAAGGTGTCGTTCAGTTAGGAGCTGTTCACAAGGTGATTGAAGACTTGAGCTATGTAGTTCTGCTAAGAAAGAAGTTCAGCTACATCGAAAGCATCCCCGGAGTGCTTCTCCCTCACCCATCATCTCCATCCTTCCCCTTCAAGCCTGATCGTCATCATGGCTATGCATACGGTCCCACCCCAGATTATCATAATCATCCTCAACATGCATGGCATTTCCAAGGTGGCACAAACCCTCTTGCACCACCTCCAACTCATGACTTCATGTATGATCATCCCCAATATCTCAACCCTAGTCAAGTAGTTCCACTGAAAAACATAACCCCCTCTATGAGCAGCCTTGAAGCCCTCCTCTCTAAGCTTCCCTCCGTCGTGCCGACGAATGACGATCATCATCATCATCATCCACAGCCGCACGATCAATCCCAGTTTGTGTTATCTCATGGACCTGTGGACTTCATGGCAATGACCAAGCAGAAAGCGGCCAAGCAGGAGACTACTGATCATGATGACAGTCATGACCGTAACGAAGAATATAGGCCGTCGGATTACCAAAACGTCGGTGAAACCAGCAATTCTATGTCCGCTTATTCCCGTCAACAGCAACAGCATTTCCATCACGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bHLH-MYC_N

Protein Analysis

299

Amino Acids

34.11

Weight (kDa)

6.1

Isoelectric Point (pI)

52.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 11 - 116 3.2e-19 bHLH-MYC and R2R3-MYB transcription factors N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G60060 AT1G60060
fragaria_vesca FvH4_4g34860
malus_domestica MD13G1088900.v1.1 MD16G1089000.v1.1
prunus_persica Prupe.1G256900_v2.0.a1
pyrus_communis pycom13g07700 pycom16g07620
rosa_chinensis RchiOBHm_Chr4g0444251
rosa_laevigata RLG00000005846
rosa_multiflora Rmu_sc0002841.1_g000017
rosa_roxburghii Rroxscaffold_5G00384820
rosa_rugosa Rorug04G0350900 Rorug04G0351000
rosa_samantha Rh4AG411900 Rh4BG423200 Rh4CG437400 Rh4DG418400
rosa_wichuraiana Rw4G035360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 116, 683, 752, 855
AcoI YGGCCR 1 cut(s) 753
AdeI CACNNNGTG 1 cut(s) 304
AflII CTTAAG 1 cut(s) 13
AgsI TTSAA 5 cut(s) 29, 64, 311, 412, 614
AluBI AGCT 5 cut(s) 55, 293, 321, 351, 631
AluI AGCT 5 cut(s) 55, 293, 321, 351, 631
Alw26I GTCTC 1 cut(s) 758
AoxI GGCC 3 cut(s) 40, 753, 809
ApeKI GCWGC 1 cut(s) 606
AspS9I GGNCC 2 cut(s) 443, 716
AsuC2I CCSGG 1 cut(s) 369
AsuHPI GGTGA 3 cut(s) 316, 377, 845
AvaII GGWCC 2 cut(s) 443, 716
BarI GAAGNNNNNNTAC 2 cut(s) 335, 367
BbsI GAAGAC 1 cut(s) 318
BbvI GCAGC 1 cut(s) 618
BccI CCATC 4 cut(s) 177, 397, 406, 894
BceAI ACGGC 1 cut(s) 796
BciVI GTATCC 1 cut(s) 132
BclI TGATCA 3 cut(s) 157, 541, 772
BcnI CCSGG 1 cut(s) 369
BcoDI GTCTC 1 cut(s) 758
BfaI CTAG 2 cut(s) 210, 564
BfrI CTTAAG 1 cut(s) 13
BfuI GTATCC 1 cut(s) 132
BglII AGATCT 1 cut(s) 78
BisI GCNGC 4 cut(s) 117, 607, 683, 753
BlsI GCNGC 4 cut(s) 118, 608, 684, 754
Bme1390I CCNGG 1 cut(s) 369
Bme18I GGWCC 2 cut(s) 443, 716
BmgT120I GGNCC 2 cut(s) 443, 716
BmiI GGNNCC 1 cut(s) 445
BmrFI CCNGG 1 cut(s) 369
BmrI ACTGGG 1 cut(s) 691
BmsI GCATC 1 cut(s) 372
BmuI ACTGGG 1 cut(s) 691
BpiI GAAGAC 1 cut(s) 318
BplI GAGNNNNNCTC 2 cut(s) 363, 395
Bpu10I CCTNAGC 1 cut(s) 51
BpuEI CTTGAG 1 cut(s) 337
BpuMI CCSGG 1 cut(s) 369
BsaBI GATNNNNATC 2 cut(s) 423, 663
BsaJI CCNNGG 2 cut(s) 367, 490
Bse1I ACTGG 2 cut(s) 232, 697
Bse3DI GCAATG 1 cut(s) 741
Bse8I GATNNNNATC 2 cut(s) 423, 663
BseDI CCNNGG 2 cut(s) 367, 490
BseGI GGATG 6 cut(s) 188, 363, 398, 466, 544, 673
BseJI GATNNNNATC 2 cut(s) 423, 663
BseMI GCAATG 1 cut(s) 741
BseMII CTCAG 2 cut(s) 42, 207
BseNI ACTGG 2 cut(s) 232, 697
BseRI GAGGAG 1 cut(s) 611
BseXI GCAGC 1 cut(s) 618
BshFI GGCC 3 cut(s) 42, 755, 811
BsiSI CCGG 1 cut(s) 369
BslFI GGGAC 2 cut(s) 55, 429
BsmAI GTCTC 1 cut(s) 758
BsmFI GGGAC 2 cut(s) 55, 429
BsnI GGCC 3 cut(s) 42, 755, 811
BspACI CCGC 4 cut(s) 116, 683, 752, 855
BspANI GGCC 3 cut(s) 42, 755, 811
BspCNI CTCAG 2 cut(s) 43, 206
BspHI TCATGA 3 cut(s) 526, 775, 787
BspLI GGNNCC 1 cut(s) 445
BspTI CTTAAG 1 cut(s) 13
BsrDI GCAATG 1 cut(s) 741
BsrI ACTGG 2 cut(s) 232, 697
BssECI CCNNGG 2 cut(s) 367, 490
BssT1I CCWWGG 1 cut(s) 490
Bst4CI ACNGT 3 cut(s) 443, 785, 794
BstAFI CTTAAG 1 cut(s) 13
BstC8I GCNNGC 1 cut(s) 44
BstDEI CTNAG 4 cut(s) 51, 193, 335, 627
BstF5I GGATG 6 cut(s) 188, 363, 398, 466, 544, 673
BstMAI GTCTC 1 cut(s) 758
BstMWI GCNNNNNNNGC 3 cut(s) 15, 52, 260
BstNSI RCATGY 2 cut(s) 205, 479
BstSCI CCNGG 1 cut(s) 367
BstV1I GCAGC 1 cut(s) 618
BstV2I GAAGAC 1 cut(s) 318
BstX2I RGATCY 1 cut(s) 78
BstYI RGATCY 1 cut(s) 78
BsuI GTATCC 1 cut(s) 132
BsuRI GGCC 3 cut(s) 42, 755, 811
BtsCI GGATG 6 cut(s) 188, 363, 398, 466, 544, 673
BtsIMutI CAGTG 1 cut(s) 578
Cac8I GCNNGC 1 cut(s) 44
CciI TCATGA 3 cut(s) 526, 775, 787
Cfr13I GGNCC 2 cut(s) 443, 716
DdeI CTNAG 4 cut(s) 51, 193, 335, 627
DraIII CACNNNGTG 1 cut(s) 304
EaeI YGGCCR 1 cut(s) 753
Eco130I CCWWGG 1 cut(s) 490
Eco47I GGWCC 2 cut(s) 443, 716
EcoT14I CCWWGG 1 cut(s) 490
EcoT22I ATGCAT 2 cut(s) 439, 481
ErhI CCWWGG 1 cut(s) 490
FaqI GGGAC 2 cut(s) 55, 429
FbaI TGATCA 3 cut(s) 157, 541, 772
Fnu4HI GCNGC 4 cut(s) 117, 607, 683, 753
FokI GGATG 6 cut(s) 195, 350, 385, 453, 531, 660
Fsp4HI GCNGC 4 cut(s) 117, 607, 683, 753
FspBI CTAG 2 cut(s) 210, 564
GluI GCNGC 4 cut(s) 117, 607, 683, 753
HaeIII GGCC 3 cut(s) 42, 755, 811
HapII CCGG 1 cut(s) 369
HincII GTYRAC 1 cut(s) 869
HindII GTYRAC 1 cut(s) 869
HindIII AAGCTT 1 cut(s) 629
HpaII CCGG 1 cut(s) 369
HphI GGTGA 3 cut(s) 316, 377, 845
Hpy166II GTNNAC 3 cut(s) 298, 724, 869
Hpy188I TCNGA 1 cut(s) 817
Hpy188III TCNNGA 8 cut(s) 64, 106, 161, 180, 527, 776, 788, 890
Hpy8I GTNNAC 3 cut(s) 298, 724, 869
Hpy99I CGWCG 4 cut(s) 644, 652, 817, 833
HpyAV CCTTC 4 cut(s) 89, 266, 412, 418
HpyCH4III ACNGT 3 cut(s) 443, 785, 794
HpyCH4IV ACGT 1 cut(s) 828
HpyCH4V TGCA 5 cut(s) 46, 205, 437, 479, 512
HpyF10VI GCNNNNNNNGC 3 cut(s) 15, 52, 260
HpyF3I CTNAG 4 cut(s) 51, 193, 335, 627
HpySE526I ACGT 1 cut(s) 828
Ksp22I TGATCA 3 cut(s) 157, 541, 772
LmnI GCTCC 1 cut(s) 290
Lsp1109I GCAGC 1 cut(s) 618
LweI GCATC 1 cut(s) 372
MaeI CTAG 2 cut(s) 210, 564
MaeII ACGT 1 cut(s) 828
MaeIII GTNAC 1 cut(s) 794
MboII GAAGA 3 cut(s) 52, 323, 812
MflI RGATCY 1 cut(s) 78
MluCI AATT 3 cut(s) 23, 227, 844
MmeI TCCRAC 2 cut(s) 545, 795
MnlI CCTC 8 cut(s) 393, 480, 516, 528, 607, 629, 632, 646
Mph1103I ATGCAT 2 cut(s) 439, 481
MseI TTAA 1 cut(s) 14
MslI CAYNNNNRTG 2 cut(s) 432, 734
MspCI CTTAAG 1 cut(s) 13
MspI CCGG 1 cut(s) 369
MspR9I CCNGG 1 cut(s) 369
MwoI GCNNNNNNNGC 3 cut(s) 15, 52, 260
NciI CCSGG 1 cut(s) 369
NlaIV GGNNCC 1 cut(s) 445
NsiI ATGCAT 2 cut(s) 439, 481
NspI RCATGY 2 cut(s) 205, 479
PagI TCATGA 3 cut(s) 526, 775, 787
PkrI GCNGC 4 cut(s) 118, 608, 684, 754
PspN4I GGNNCC 1 cut(s) 445
PspPI GGNCC 2 cut(s) 443, 716
PsuI RGATCY 1 cut(s) 78
RseI CAYNNNNRTG 2 cut(s) 432, 734
SaqAI TTAA 1 cut(s) 14
SatI GCNGC 4 cut(s) 117, 607, 683, 753
Sau96I GGNCC 2 cut(s) 443, 716
ScrFI CCNGG 1 cut(s) 369
SfaNI GCATC 1 cut(s) 372
SinI GGWCC 2 cut(s) 443, 716
SmiMI CAYNNNNRTG 2 cut(s) 432, 734
SmlI CTYRAG 2 cut(s) 13, 316
SmoI CTYRAG 2 cut(s) 13, 316
Sse9I AATT 3 cut(s) 23, 227, 844
SsiI CCGC 4 cut(s) 116, 683, 752, 855
SspMI CTAG 2 cut(s) 210, 564
StyD4I CCNGG 1 cut(s) 367
StyI CCWWGG 1 cut(s) 490
TaaI ACNGT 3 cut(s) 443, 785, 794
TaiI ACGT 1 cut(s) 831
TaqI TCGA 1 cut(s) 357
TasI AATT 3 cut(s) 23, 227, 844
TauI GCSGC 3 cut(s) 119, 685, 755
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TscAI CASTG 1 cut(s) 585
TseI GCWGC 1 cut(s) 606
TspDTI ATGAA 2 cut(s) 523, 718
TspGWI ACGGA 1 cut(s) 628
TspRI CASTG 1 cut(s) 585
Vha464I CTTAAG 1 cut(s) 13
VpaK11BI GGWCC 2 cut(s) 443, 716
XceI RCATGY 2 cut(s) 205, 479
XcmI CCANNNNNNNNNTGG 1 cut(s) 233
XspI CTAG 2 cut(s) 210, 564
Zsp2I ATGCAT 2 cut(s) 439, 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.