pycom13g10330

CTD small phosphatase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0004206
Physical Location & Seq
Forward (+)
6917000 .. 6920300
3301 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1398 bp
ATGCAAACGAAGAAAAGAAGTTCTGGAAGAACTGCTGTGAGAGAGCACGCTTGTCCCAAGGTTACAAGAGCTCAGAAGAAAGCATATGAAAGTGTGCAAGTTGTGGAAAAGAAAGTTGCTGACCTAATTACATCTTCAGCAAGGAAGCAGAGAATAGATGGCACTCATAAAAAGAATGGGGGGCCTGTTACTGCAACCAATTCAAATTTGAATTATGACTCAATGCGTGATGGGACTGCTGACACTTGTTTGGGGCATGATGCTATGCGTGATGATTGCATAGATATTAAGGATTGTAAAGAGGGAACTACTGATTGCGAAGCAGAAACTATATTTTCTCCTGCCTTTCACATATCTAAACATGCCGAAGGGGAATCTGATAATGGAGTTGATTTTGTTAAATTCTTTGGAAATGGAGACCACAGTTATCATCAAGATTGTGAAATAATGTACTCAAGGGTTGATGTGCTGAATGGTCATGTTGTTCAAGAGACTTCCGAATCCATGGTTAGAGATGAGAGGAGTTACTGTGAGAACACATTTTCTTCAGTAAATATAACATGTCCTGTTGTGGATCCAGCCACTATTTCTTCTGAAGTCTCAGCCATATATCTTGCCATGAAAAATTCCAAGTTGGAATGTGTGGATGAACATGGTCACGAGCCCATGTCAACTGATTTATACACAGATGATGACGAGTATGAGGAAGTTGATGACTTTGATCCTTACTTCTTTATCAAGAACTTACCTGACTTATCAGCAGTTGTTCCAACTTTTCGGCCGATGCTTTTACCTAAACAGACACGGCGTTGTCCTCCTACTAGTCTTGTTTTGGACTTGGATGAAACCTTGGTACACTCCACACTAGAACCTTGTGCTGATGCAGACTTCACTTTTGCCGTAAATTTTAACCTCCAAAAGCATACAGTATATGTCCGATGCCGTCCTCATCTCAGAGATTTTCTGGACAAAGTTTCCAATCTTTTTGAGATCATAATATTTACAGCTAGTCAAAGTATTTATGCAGAGCAACTTCTAAATGTGCTGGACCCAAAAAGGAAGATATTTCGCCATCGTGTTTTTCGGGATTCCTGTGTTTTTGTGGAGGGGAATTACCTCAAAGATTTGTCAGTTCTTGGTCGTGATTTGGCACACACTATCATAATCGACAACTCTCCACAGGCATTCGGGTTCCAAGTAGACAATGGAATTCCAATTGAGAGCTGGTTCGATGATCGTTCTGATAAAGAATTACTCTTCTTACTTCCTTTTTTGGAGAGCTTGGTTGGAGTAGAAGATGTTCGGCCACTAATTGCAAGCAAATTCAGCCTTAGGGAGAAAATAGCTGCAGCTGTTTATCCTCTTCACTCAAACAGAGGCGATCCTTTCGAAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NIF

Protein Analysis

466

Amino Acids

52.59

Weight (kDa)

5.17

Isoelectric Point (pI)

35.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NIF PF03031 276 - 435 8.8e-59 NLI interacting factor-like phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1200
AclWI GGATC 4 cut(s) 569, 582, 716, 1376
AcoI YGGCCR 2 cut(s) 779, 1304
AcsI RAATTY 6 cut(s) 205, 401, 625, 904, 1209, 1322
AcuI CTGAAG 3 cut(s) 120, 531, 615
AfaI GTAC 2 cut(s) 452, 855
AflIII ACRYGT 1 cut(s) 560
AgsI TTSAA 3 cut(s) 204, 211, 488
AhlI ACTAGT 1 cut(s) 821
AluBI AGCT 6 cut(s) 71, 1007, 1224, 1281, 1346, 1352
AluI AGCT 6 cut(s) 71, 1007, 1224, 1281, 1346, 1352
Alw21I GWGCWC 2 cut(s) 48, 73
Alw26I GTCTC 3 cut(s) 411, 485, 604
AlwI GGATC 4 cut(s) 569, 582, 716, 1376
AoxI GGCC 3 cut(s) 182, 779, 1304
ApeKI GCWGC 2 cut(s) 1346, 1349
ApoI RAATTY 6 cut(s) 205, 401, 625, 904, 1209, 1322
ArsI GACNNNNNNTTYG 2 cut(s) 878, 910
Asp700I GAANNNNTTC 1 cut(s) 1299
AspS9I GGNCC 2 cut(s) 182, 1048
AsuII TTCGAA 1 cut(s) 1389
AvaII GGWCC 1 cut(s) 1048
AxyI CCTNAGG 1 cut(s) 1331
BamHI GGATCC 1 cut(s) 574
BanII GRGCYC 2 cut(s) 73, 666
BauI CACGAG 1 cut(s) 659
Bbv12I GWGCWC 2 cut(s) 48, 73
BbvI GCAGC 2 cut(s) 1333, 1361
BccI CCATC 3 cut(s) 152, 224, 1080
BceAI ACGGC 3 cut(s) 821, 884, 927
BcoDI GTCTC 3 cut(s) 411, 485, 604
BcuI ACTAGT 1 cut(s) 821
BfaI CTAG 3 cut(s) 822, 866, 1008
BfmI CTRYAG 1 cut(s) 1347
BisI GCNGC 2 cut(s) 1347, 1350
BlsI GCNGC 2 cut(s) 1348, 1351
Bme18I GGWCC 1 cut(s) 1048
BmgT120I GGNCC 2 cut(s) 182, 1048
BmiI GGNNCC 4 cut(s) 183, 576, 1050, 1193
BmsI GCATC 4 cut(s) 250, 774, 871, 929
Bpu14I TTCGAA 1 cut(s) 1389
BpuEI CTTGAG 1 cut(s) 439
BsaI GGTCTC 1 cut(s) 411
BsaJI CCNNGG 3 cut(s) 57, 504, 849
BsaXI ACNNNNNCTCC 2 cut(s) 514, 544
Bse21I CCTNAGG 1 cut(s) 1331
BseDI CCNNGG 3 cut(s) 57, 504, 849
BseGI GGATG 2 cut(s) 652, 847
BseMII CTCAG 3 cut(s) 86, 615, 967
BseRI GAGGAG 1 cut(s) 535
BseX3I CGGCCG 1 cut(s) 779
BseXI GCAGC 2 cut(s) 1333, 1361
Bsh1285I CGRYCG 1 cut(s) 782
BshFI GGCC 3 cut(s) 184, 781, 1306
BsiEI CGRYCG 1 cut(s) 782
BsiHKAI GWGCWC 2 cut(s) 48, 73
BslFI GGGAC 2 cut(s) 39, 247
BsmAI GTCTC 3 cut(s) 411, 485, 604
BsmFI GGGAC 2 cut(s) 39, 247
BsmI GAATGC 1 cut(s) 1184
BsnI GGCC 3 cut(s) 184, 781, 1306
Bso31I GGTCTC 1 cut(s) 411
Bsp119I TTCGAA 1 cut(s) 1389
Bsp1286I GDGCHC 3 cut(s) 48, 73, 666
Bsp143I GATC 5 cut(s) 574, 721, 990, 1234, 1381
Bsp19I CCATGG 1 cut(s) 504
BspANI GGCC 3 cut(s) 184, 781, 1306
BspCNI CTCAG 3 cut(s) 85, 614, 966
BspLI GGNNCC 4 cut(s) 183, 576, 1050, 1193
BspMAI CTGCAG 1 cut(s) 1351
BspPI GGATC 4 cut(s) 569, 582, 716, 1376
BspT104I TTCGAA 1 cut(s) 1389
BspTNI GGTCTC 1 cut(s) 411
BssECI CCNNGG 3 cut(s) 57, 504, 849
BssMI GATC 5 cut(s) 574, 721, 990, 1234, 1381
BssSI CACGAG 1 cut(s) 659
BssT1I CCWWGG 3 cut(s) 57, 504, 849
Bst2BI CACGAG 1 cut(s) 659
Bst4CI ACNGT 3 cut(s) 425, 530, 928
Bst6I CTCTTC 2 cut(s) 1262, 1368
BstBI TTCGAA 1 cut(s) 1389
BstC8I GCNNGC 2 cut(s) 48, 1318
BstDEI CTNAG 4 cut(s) 72, 601, 953, 1331
BstDSI CCRYGG 1 cut(s) 504
BstF5I GGATG 2 cut(s) 652, 847
BstKTI GATC 5 cut(s) 577, 724, 993, 1237, 1384
BstMAI GTCTC 3 cut(s) 411, 485, 604
BstMBI GATC 5 cut(s) 574, 721, 990, 1234, 1381
BstMCI CGRYCG 1 cut(s) 782
BstMWI GCNNNNNNNGC 1 cut(s) 1326
BstNSI RCATGY 2 cut(s) 365, 564
BstSFI CTRYAG 1 cut(s) 1347
BstV1I GCAGC 2 cut(s) 1333, 1361
BstX2I RGATCY 1 cut(s) 574
BstYI RGATCY 1 cut(s) 574
BstZI CGGCCG 1 cut(s) 779
Bsu36I CCTNAGG 1 cut(s) 1331
BsuRI GGCC 3 cut(s) 184, 781, 1306
BtgI CCRYGG 1 cut(s) 504
BtsCI GGATG 2 cut(s) 652, 847
Cac8I GCNNGC 2 cut(s) 48, 1318
Cfr13I GGNCC 2 cut(s) 182, 1048
Csp6I GTAC 2 cut(s) 451, 854
CviAII CATG 8 cut(s) 257, 362, 479, 505, 561, 619, 653, 667
CviQI GTAC 2 cut(s) 451, 854
DdeI CTNAG 4 cut(s) 72, 601, 953, 1331
DpnI GATC 5 cut(s) 576, 723, 992, 1236, 1383
DpnII GATC 5 cut(s) 574, 721, 990, 1234, 1381
EaeI YGGCCR 2 cut(s) 779, 1304
EagI CGGCCG 1 cut(s) 779
Eam1104I CTCTTC 2 cut(s) 1262, 1368
EarI CTCTTC 2 cut(s) 1262, 1368
Ecl136II GAGCTC 1 cut(s) 71
EclXI CGGCCG 1 cut(s) 779
Eco130I CCWWGG 3 cut(s) 57, 504, 849
Eco24I GRGCYC 2 cut(s) 73, 666
Eco31I GGTCTC 1 cut(s) 411
Eco47I GGWCC 1 cut(s) 1048
Eco52I CGGCCG 1 cut(s) 779
Eco53kI GAGCTC 1 cut(s) 71
Eco57I CTGAAG 3 cut(s) 120, 531, 615
Eco81I CCTNAGG 1 cut(s) 1331
EcoICRI GAGCTC 1 cut(s) 71
EcoO109I RGGNCCY 1 cut(s) 182
EcoRI GAATTC 1 cut(s) 1209
EcoT14I CCWWGG 3 cut(s) 57, 504, 849
EcoT38I GRGCYC 2 cut(s) 73, 666
ErhI CCWWGG 3 cut(s) 57, 504, 849
FaeI CATG 8 cut(s) 260, 365, 482, 508, 564, 622, 656, 670
FaqI GGGAC 2 cut(s) 39, 247
FatI CATG 8 cut(s) 256, 361, 478, 504, 560, 618, 652, 666
FauNDI CATATG 1 cut(s) 85
FblI GTMKAC 1 cut(s) 1200
Fnu4HI GCNGC 2 cut(s) 1347, 1350
FokI GGATG 2 cut(s) 659, 854
FriOI GRGCYC 2 cut(s) 73, 666
Fsp4HI GCNGC 2 cut(s) 1347, 1350
FspBI CTAG 3 cut(s) 822, 866, 1008
GluI GCNGC 2 cut(s) 1347, 1350
HaeIII GGCC 3 cut(s) 184, 781, 1306
Hin1II CATG 8 cut(s) 260, 365, 482, 508, 564, 622, 656, 670
HincII GTYRAC 1 cut(s) 672
HindII GTYRAC 1 cut(s) 672
HinfI GANTC 4 cut(s) 218, 374, 500, 1088
Hpy166II GTNNAC 3 cut(s) 672, 856, 1201
Hpy188I TCNGA 7 cut(s) 75, 379, 499, 595, 938, 956, 1243
Hpy188III TCNNGA 8 cut(s) 24, 434, 488, 659, 739, 965, 1085, 1142
Hpy8I GTNNAC 3 cut(s) 672, 856, 1201
HpyAV CCTTC 1 cut(s) 362
HpyCH4III ACNGT 3 cut(s) 425, 530, 928
HpyCH4V TGCA 8 cut(s) 4, 97, 194, 279, 884, 1025, 1316, 1349
HpyF10VI GCNNNNNNNGC 1 cut(s) 1326
HpyF3I CTNAG 4 cut(s) 72, 601, 953, 1331
Hsp92II CATG 8 cut(s) 260, 365, 482, 508, 564, 622, 656, 670
Kzo9I GATC 5 cut(s) 574, 721, 990, 1234, 1381
Lsp1109I GCAGC 2 cut(s) 1333, 1361
LweI GCATC 4 cut(s) 250, 774, 871, 929
MaeI CTAG 3 cut(s) 822, 866, 1008
MaeIII GTNAC 4 cut(s) 61, 187, 524, 656
MalI GATC 5 cut(s) 576, 723, 992, 1236, 1383
MboI GATC 5 cut(s) 574, 721, 990, 1234, 1381
MfeI CAATTG 1 cut(s) 1215
MflI RGATCY 1 cut(s) 574
MhlI GDGCHC 3 cut(s) 48, 73, 666
MlyI GAGTC 1 cut(s) 212
MmeI TCCRAC 3 cut(s) 615, 794, 1267
MroXI GAANNNNTTC 1 cut(s) 1299
MseI TTAA 3 cut(s) 288, 399, 909
MspA1I CMGCKG 1 cut(s) 1352
MunI CAATTG 1 cut(s) 1215
Mva1269I GAATGC 1 cut(s) 1184
MwoI GCNNNNNNNGC 1 cut(s) 1326
NcoI CCATGG 1 cut(s) 504
NdeI CATATG 1 cut(s) 85
NdeII GATC 5 cut(s) 574, 721, 990, 1234, 1381
NlaIII CATG 8 cut(s) 260, 365, 482, 508, 564, 622, 656, 670
NlaIV GGNNCC 4 cut(s) 183, 576, 1050, 1193
NmuCI GTSAC 1 cut(s) 656
NspI RCATGY 2 cut(s) 365, 564
NspV TTCGAA 1 cut(s) 1389
PciI ACATGT 1 cut(s) 560
PctI GAATGC 1 cut(s) 1184
PdmI GAANNNNTTC 1 cut(s) 1299
PfeI GAWTC 3 cut(s) 374, 500, 1088
PkrI GCNGC 2 cut(s) 1348, 1351
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
PscI ACATGT 1 cut(s) 560
Psp124BI GAGCTC 1 cut(s) 73
PspN4I GGNNCC 4 cut(s) 183, 576, 1050, 1193
PspPI GGNCC 2 cut(s) 182, 1048
PsrI GAACNNNNNNTAC 2 cut(s) 1284, 1316
PstI CTGCAG 1 cut(s) 1351
PsuI RGATCY 1 cut(s) 574
PvuII CAGCTG 1 cut(s) 1352
RsaI GTAC 2 cut(s) 452, 855
RsaNI GTAC 2 cut(s) 451, 854
SacI GAGCTC 1 cut(s) 73
SaqAI TTAA 3 cut(s) 288, 399, 909
SatI GCNGC 2 cut(s) 1347, 1350
Sau3AI GATC 5 cut(s) 574, 721, 990, 1234, 1381
Sau96I GGNCC 2 cut(s) 182, 1048
SchI GAGTC 1 cut(s) 212
SduI GDGCHC 3 cut(s) 48, 73, 666
SfaNI GCATC 4 cut(s) 250, 774, 871, 929
SfcI CTRYAG 1 cut(s) 1347
SfuI TTCGAA 1 cut(s) 1389
SinI GGWCC 1 cut(s) 1048
SmlI CTYRAG 1 cut(s) 454
SmoI CTYRAG 1 cut(s) 454
SpeI ACTAGT 1 cut(s) 821
SspI AATATT 1 cut(s) 999
SspMI CTAG 3 cut(s) 822, 866, 1008
SstI GAGCTC 1 cut(s) 73
StyI CCWWGG 3 cut(s) 57, 504, 849
TaaI ACNGT 3 cut(s) 425, 530, 928
TaqI TCGA 3 cut(s) 1167, 1230, 1389
TatI WGTACW 1 cut(s) 450
TfiI GAWTC 3 cut(s) 374, 500, 1088
Tru1I TTAA 3 cut(s) 288, 399, 909
Tru9I TTAA 3 cut(s) 288, 399, 909
TseFI GTSAC 1 cut(s) 656
TseI GCWGC 2 cut(s) 1346, 1349
Tsp45I GTSAC 1 cut(s) 656
TspDTI ATGAA 4 cut(s) 102, 635, 663, 858
VpaK11BI GGWCC 1 cut(s) 1048
XapI RAATTY 6 cut(s) 205, 401, 625, 904, 1209, 1322
XceI RCATGY 2 cut(s) 365, 564
XcmI CCANNNNNNNNNTGG 2 cut(s) 1202, 1221
XmiI GTMKAC 1 cut(s) 1200
XmnI GAANNNNTTC 1 cut(s) 1299
XspI CTAG 3 cut(s) 822, 866, 1008
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.