Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0004303

Physical Location & Seq

Genomic Coordinates Reverse (-)

7133242 .. 7135198

Gene Structure 1957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGAAGTCCCATAAAATCGTAGTAATCAGGCAATTATCGTCACTAAACAAACCCAACCGCCCCCTCTATTTCTTTCTCTCTCTGATGGAAAATTACCCAACATTCTTTTCTTCATCCACGGCGCCTGCTCCTTTTCCCCTGTCATTGAGCATGGGGAACCCAGCTCATCACGTTTACAATAGTAATGATCTTCACCAATTCCAAAATAGTAAATCATCGAATGGGTTCTTAGGACTGATGTCAGAGATGGAGGCTTCAAACAATATGATCAAGAACAATTCTAGTTCTCAGGAAAAAAGCTTTGGAGGATCTGAAAGTGGTGAGGCAACTGTGAGATTAGGGATGAAAAAAGGAGATCAGAAAAAAATAAGAAAGCCCAGATATGCTTTTCAAACAAGGAGCCAAGTTGATATACTTGATGATGGATATAGATGGAGGAAGTATGGTCAAAAAGCAGTGAAGAACAACAAATTTCCAAGAAGCTACTACAGGTGCACACATCAGGGGTGCAATGTGAAAAAGCAAGTTCAAAGGTTAACAAAAGATGAAGGAGTCGTTGTGACAACTTATGAAGGCATGCATTCTCATCCCATCGAGAAGTCTACTGATAACTTTGAGCATATTTTGAGCCAGATGAAAATCTACACTCCATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010015 GO:0010053 GO:0010055 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032101 GO:0032104 GO:0032107 GO:0032501 GO:0032502 GO:0033554 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043620 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048583 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0090627 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

219

Amino Acids

24.99

Weight (kDa)

9.78

Isoelectric Point (pI)

43.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	140 - 197	4.5e-27	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13080
fragaria_vesca	FvH4_4g23480 FvH4_5g08610
malus_domestica	MD06G1138500.v1.1 MD13G1122100.v1.1 MD14G1154500.v1.1 MD16G1122400.v1.1
prunus_persica	Prupe.1G223200_v2.0.a1 Prupe.5G148700_v2.0.a1 Prupe.5G148700_v2.0.a1
pyrus_communis	pycom06g12970 pycom13g10630 pycom14g12860 pycom16g10490
rosa_chinensis	RchiOBHm_Chr4g0429851 RchiOBHm_Chr7g0189781
rosa_laevigata	RLG00000004591 RLG00000007038
rosa_multiflora	Rmu_sc0002225.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265170 Rroxscaffold_5G00371610
rosa_rugosa	Rorug04G0238600 Rorug06G0499800
rosa_samantha	Rh4AG295000 Rh4BG301400 Rh4CG316600 Rh4DG298300 Rh7AG104900 Rh7CG109500 Rh7DG107900
rosa_wichuraiana	Rw4G025530 Rw7G009080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	121
AccI	GTMKAC	1 cut(s)	602
AciI	CCGC	1 cut(s)	58
AclWI	GGATC	1 cut(s)	316
AcsI	RAATTY	1 cut(s)	470
AcyI	GRCGYC	1 cut(s)	122
AgsI	TTSAA	3 cut(s)	258, 392, 530
AjuI	GAANNNNNNNTTGG	4 cut(s)	91, 123, 285, 317
AluBI	AGCT	3 cut(s)	164, 300, 483
AluI	AGCT	3 cut(s)	164, 300, 483
Alw21I	GWGCWC	1 cut(s)	497
Alw44I	GTGCAC	1 cut(s)	493
AlwI	GGATC	1 cut(s)	316
ApaLI	GTGCAC	1 cut(s)	493
ApoI	RAATTY	1 cut(s)	470
Asp700I	GAANNNNTTC	1 cut(s)	224
AspLEI	GCGC	1 cut(s)	124
AsuHPI	GGTGA	2 cut(s)	185, 332
BaeGI	GKGCMC	1 cut(s)	497
BanI	GGYRCC	1 cut(s)	121
Bbv12I	GWGCWC	1 cut(s)	497
BccI	CCATC	5 cut(s)	79, 241, 416, 426, 599
BceAI	ACGGC	1 cut(s)	135
BclI	TGATCA	1 cut(s)	267
BfaI	CTAG	1 cut(s)	282
BfmI	CTRYAG	1 cut(s)	487
BfoI	RGCGCY	1 cut(s)	125
BmiI	GGNNCC	3 cut(s)	123, 158, 401
BoxI	GACNNNNGTC	1 cut(s)	238
BsaBI	GATNNNNATC	1 cut(s)	638
BsaHI	GRCGYC	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	117
BsaXI	ACNNNNNCTCC	2 cut(s)	543, 573
Bse3DI	GCAATG	1 cut(s)	517
Bse8I	GATNNNNATC	1 cut(s)	638
BseDI	CCNNGG	1 cut(s)	117
BseGI	GGATG	3 cut(s)	113, 348, 586
BseJI	GATNNNNATC	1 cut(s)	638
BseMI	GCAATG	1 cut(s)	517
BseMII	CTCAG	1 cut(s)	302
BseSI	GKGCMC	1 cut(s)	497
BseYI	CCCAGC	1 cut(s)	160
BshNI	GGYRCC	1 cut(s)	121
BsiHKAI	GWGCWC	1 cut(s)	497
BsmI	GAATGC	1 cut(s)	580
Bsp1286I	GDGCHC	1 cut(s)	497
Bsp143I	GATC	4 cut(s)	187, 267, 308, 355
BspACI	CCGC	1 cut(s)	58
BspCNI	CTCAG	1 cut(s)	301
BspLI	GGNNCC	3 cut(s)	123, 158, 401
BspPI	GGATC	1 cut(s)	316
BspT107I	GGYRCC	1 cut(s)	121
BsrDI	GCAATG	1 cut(s)	517
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	4 cut(s)	187, 267, 308, 355
BssNI	GRCGYC	1 cut(s)	122
Bst4CI	ACNGT	1 cut(s)	331
BstACI	GRCGYC	1 cut(s)	122
BstC8I	GCNNGC	2 cut(s)	126, 578
BstDEI	CTNAG	2 cut(s)	229, 288
BstDSI	CCRYGG	1 cut(s)	117
BstF5I	GGATG	3 cut(s)	113, 348, 586
BstH2I	RGCGCY	1 cut(s)	125
BstHHI	GCGC	1 cut(s)	124
BstKTI	GATC	4 cut(s)	190, 270, 311, 358
BstMBI	GATC	4 cut(s)	187, 267, 308, 355
BstNSI	RCATGY	1 cut(s)	580
BstPAI	GACNNNNGTC	1 cut(s)	238
BstSFI	CTRYAG	1 cut(s)	487
BstSLI	GKGCMC	1 cut(s)	497
BstX2I	RGATCY	1 cut(s)	308
BstYI	RGATCY	1 cut(s)	308
BtgI	CCRYGG	1 cut(s)	117
BtsCI	GGATG	3 cut(s)	113, 348, 586
BtsI	GCAGTG	1 cut(s)	462
BtsIMutI	CAGTG	1 cut(s)	462
Cac8I	GCNNGC	2 cut(s)	126, 578
CfoI	GCGC	1 cut(s)	124
CviAII	CATG	2 cut(s)	151, 577
CviJI	RGCY	7 cut(s)	164, 254, 300, 376, 402, 483, 630
CviKI_1	RGCY	7 cut(s)	164, 254, 300, 376, 402, 483, 630
DdeI	CTNAG	2 cut(s)	229, 288
DinI	GGCGCC	1 cut(s)	123
DpnI	GATC	4 cut(s)	189, 269, 310, 357
DpnII	GATC	4 cut(s)	187, 267, 308, 355
EcoT22I	ATGCAT	1 cut(s)	582
EgeI	GGCGCC	1 cut(s)	123
EheI	GGCGCC	1 cut(s)	123
FaeI	CATG	2 cut(s)	154, 580
FatI	CATG	2 cut(s)	150, 576
FbaI	TGATCA	1 cut(s)	267
FblI	GTMKAC	1 cut(s)	602
FokI	GGATG	3 cut(s)	100, 355, 573
FspBI	CTAG	1 cut(s)	282
GlaI	GCGC	1 cut(s)	123
GsaI	CCCAGC	1 cut(s)	164
HaeII	RGCGCY	1 cut(s)	125
HhaI	GCGC	1 cut(s)	124
Hin1I	GRCGYC	1 cut(s)	122
Hin1II	CATG	2 cut(s)	154, 580
Hin6I	GCGC	1 cut(s)	122
HinP1I	GCGC	1 cut(s)	122
HincII	GTYRAC	1 cut(s)	537
HindII	GTYRAC	1 cut(s)	537
HindIII	AAGCTT	1 cut(s)	298
HinfI	GANTC	1 cut(s)	552
HpaI	GTTAAC	1 cut(s)	537
HphI	GGTGA	2 cut(s)	185, 332
Hpy166II	GTNNAC	4 cut(s)	175, 495, 537, 603
Hpy188I	TCNGA	4 cut(s)	84, 244, 313, 360
Hpy188III	TCNNGA	3 cut(s)	271, 290, 595
Hpy8I	GTNNAC	4 cut(s)	175, 495, 537, 603
HpyAV	CCTTC	2 cut(s)	542, 566
HpyCH4III	ACNGT	1 cut(s)	331
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	3 cut(s)	495, 510, 580
HpyF3I	CTNAG	2 cut(s)	229, 288
HpySE526I	ACGT	1 cut(s)	171
Hsp92I	GRCGYC	1 cut(s)	122
Hsp92II	CATG	2 cut(s)	154, 580
HspAI	GCGC	1 cut(s)	122
KasI	GGCGCC	1 cut(s)	121
Ksp22I	TGATCA	1 cut(s)	267
KspAI	GTTAAC	1 cut(s)	537
Kzo9I	GATC	4 cut(s)	187, 267, 308, 355
LmnI	GCTCC	2 cut(s)	133, 399
LpnPI	CCDG	9 cut(s)	13, 138, 152, 174, 275, 391, 475, 488, 644
MaeI	CTAG	1 cut(s)	282
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	2 cut(s)	39, 559
MalI	GATC	4 cut(s)	189, 269, 310, 357
MboI	GATC	4 cut(s)	187, 267, 308, 355
MboII	GAAGA	3 cut(s)	102, 182, 472
MflI	RGATCY	1 cut(s)	308
MhlI	GDGCHC	1 cut(s)	497
MluCI	AATT	5 cut(s)	32, 91, 197, 277, 470
Mly113I	GGCGCC	1 cut(s)	122
MlyI	GAGTC	1 cut(s)	561
MnlI	CCTC	5 cut(s)	74, 244, 299, 316, 429
Mph1103I	ATGCAT	1 cut(s)	582
MroXI	GAANNNNTTC	1 cut(s)	224
MseI	TTAA	2 cut(s)	536, 655
Mva1269I	GAATGC	1 cut(s)	580
NarI	GGCGCC	1 cut(s)	122
NdeII	GATC	4 cut(s)	187, 267, 308, 355
NlaIII	CATG	2 cut(s)	154, 580
NlaIV	GGNNCC	3 cut(s)	123, 158, 401
NmuCI	GTSAC	2 cut(s)	39, 559
NsiI	ATGCAT	1 cut(s)	582
NspI	RCATGY	1 cut(s)	580
PaeI	GCATGC	1 cut(s)	580
PctI	GAATGC	1 cut(s)	580
PdmI	GAANNNNTTC	1 cut(s)	224
PleI	GAGTC	1 cut(s)	560
PluTI	GGCGCC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	560
PshAI	GACNNNNGTC	1 cut(s)	238
PspFI	CCCAGC	1 cut(s)	160
PspN4I	GGNNCC	3 cut(s)	123, 158, 401
PsuI	RGATCY	1 cut(s)	308
SaqAI	TTAA	2 cut(s)	536, 655
Sau3AI	GATC	4 cut(s)	187, 267, 308, 355
SchI	GAGTC	1 cut(s)	561
SduI	GDGCHC	1 cut(s)	497
SetI	ASST	6 cut(s)	166, 174, 302, 485, 494, 536
SfcI	CTRYAG	1 cut(s)	487
SfoI	GGCGCC	1 cut(s)	123
SphI	GCATGC	1 cut(s)	580
Sse9I	AATT	5 cut(s)	32, 91, 197, 277, 470
SsiI	CCGC	1 cut(s)	58
SspDI	GGCGCC	1 cut(s)	121
SspMI	CTAG	1 cut(s)	282
TaaI	ACNGT	1 cut(s)	331
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	2 cut(s)	218, 594
TasI	AATT	5 cut(s)	32, 91, 197, 277, 470
Tru1I	TTAA	2 cut(s)	536, 655
Tru9I	TTAA	2 cut(s)	536, 655
TscAI	CASTG	1 cut(s)	462
TseFI	GTSAC	2 cut(s)	39, 559
Tsp45I	GTSAC	2 cut(s)	39, 559
TspDTI	ATGAA	6 cut(s)	17, 102, 359, 561, 585, 650
TspRI	CASTG	1 cut(s)	462
VneI	GTGCAC	1 cut(s)	493
XapI	RAATTY	1 cut(s)	470
XceI	RCATGY	1 cut(s)	580
XmiI	GTMKAC	1 cut(s)	602
XmnI	GAANNNNTTC	1 cut(s)	224
XspI	CTAG	1 cut(s)	282
Zsp2I	ATGCAT	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.