Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0004722

Physical Location & Seq

Genomic Coordinates Forward (+)

8303725 .. 8304918

Gene Structure 1194 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGACCTACATAATATCAAAATAATCGAAGGGCAATTTGGATTGCTTTGGTTTCATCGTCTAAAAACAATACACAAACCAAATCCAGCGACATACATATATATATACACACACAATATATATGTATGTCAGTTAAATATATTCGCAGTCATGTTTGGTACAGATATGGCTTCACAGTCCCAATCTCAGCCATCAGCGCCGTCGTTATTGCCGCCATCGACGACGTCGACTCTGGATGCTCCACTAGGTGCGCTCGGGTTCGAGCTTGAAGAGATAACCCCCAACAAGGTCTCTGGTCGCCTCCATGTCACCGAAAACTGCGTCCAGCCATTCAAGGTGCTACATGGAGGGATATCAGCGCTCATCTCTGAGGCCCTGGCCAGCATGGGAGCTCGCCTGGCTTCTGGTTTCCAAAGGGTGGCCGGGATTCACCTCAGCATCAGCCATTTGAAGCCCGCCAAGCTCGACGACCATATCTTTGCTGAAGCCTGCCCGGTCAATGTCGGCAGGACCATTCAGGTTTGGGATGTGAAACTATGGAAGATTGATCGATCGAACTCAGACATCAAATCCATCGTATCATCATCAAGAGTTACTCTTTTAAGCAACATGCCTGTGCCGGAGCACGCGAAAGGCGCCGGTGAAACGCTCAAGAAGTATGCCAAATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006732 GO:0006766 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016043 GO:0022607 GO:0042180 GO:0042181 GO:0042372 GO:0042374 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0051188 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0065003 GO:0071704 GO:0071840 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT

Protein Analysis

224

Amino Acids

24.45

Weight (kDa)

8.96

Isoelectric Point (pI)

49.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
4HBT	PF03061	112 - 184	1.4e-14	Thioesterase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004722)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48320
fragaria_vesca	FvH4_4g21730 FvH4_4g21740
malus_domestica	MD13G1137700.v1.1 MD16G1133600.v1.1
prunus_persica	Prupe.5G045200_v2.0.a1 Prupe.5G045500_v2.0.a1
pyrus_communis	pycom13g11980 pycom13g11990
rosa_chinensis	RchiOBHm_Chr4g0427941 RchiOBHm_Chr4g0427971
rosa_laevigata	RLG00000007196 RLG00000007198
rosa_multiflora	Rmu_co8360041.1_g000001 Rmu_sc0000066.1_g000009 Rmu_sc0000066.1_g000011 Rmu_sc0009221.1_g000006 Rmu_sc0009221.1_g000008
rosa_roxburghii	Rroxscaffold_5G00369610 Rroxscaffold_5G00369630
rosa_rugosa	Rorug04G0220700
rosa_samantha	Rh4AG277900 Rh4AG278100 Rh4BG283500 Rh4BG283600 Rh4CG299100 Rh4CG299300 Rh4DG280700 Rh4DG280900
rosa_wichuraiana	Rw4G024140 Rw4G024170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	670
AatII	GACGTC	1 cut(s)	227
AccB1I	GGYRCC	1 cut(s)	635
AccB7I	CCANNNNNTGG	1 cut(s)	418
AccI	GTMKAC	1 cut(s)	227
AccII	CGCG	1 cut(s)	629
AciI	CCGC	2 cut(s)	212, 456
AcoI	YGGCCR	2 cut(s)	378, 420
AcuI	CTGAAG	1 cut(s)	504
AcyI	GRCGYC	2 cut(s)	224, 636
AdeI	CACNNNGTG	1 cut(s)	248
AfaI	GTAC	1 cut(s)	160
AfeI	AGCGCT	1 cut(s)	360
AfiI	CCNNNNNNNGG	2 cut(s)	286, 418
AgsI	TTSAA	3 cut(s)	269, 334, 451
AjnI	CCWGG	2 cut(s)	375, 396
AjuI	GAANNNNNNNTTGG	2 cut(s)	21, 53
AluBI	AGCT	3 cut(s)	265, 392, 463
AluI	AGCT	3 cut(s)	265, 392, 463
Alw21I	GWGCWC	2 cut(s)	394, 627
Alw26I	GTCTC	1 cut(s)	295
Ama87I	CYCGRG	1 cut(s)	254
Aor51HI	AGCGCT	1 cut(s)	360
AoxI	GGCC	3 cut(s)	372, 378, 420
ArsI	GACNNNNNNTTYG	4 cut(s)	306, 338, 461, 493
AspLEI	GCGC	4 cut(s)	199, 253, 361, 638
AspS9I	GGNCC	3 cut(s)	4, 373, 510
AsuC2I	CCSGG	2 cut(s)	424, 494
AsuHPI	GGTGA	3 cut(s)	301, 422, 653
AvaI	CYCGRG	1 cut(s)	254
AvaII	GGWCC	2 cut(s)	4, 510
BalI	TGGCCA	1 cut(s)	380
BanI	GGYRCC	1 cut(s)	635
BanII	GRGCYC	1 cut(s)	394
Bbv12I	GWGCWC	2 cut(s)	394, 627
BbvCI	CCTCAGC	1 cut(s)	434
BccI	CCATC	3 cut(s)	199, 223, 581
BceAI	ACGGC	1 cut(s)	184
BciT130I	CCWGG	2 cut(s)	377, 398
BcnI	CCSGG	2 cut(s)	424, 494
BcoDI	GTCTC	1 cut(s)	295
BfaI	CTAG	1 cut(s)	245
BfoI	RGCGCY	3 cut(s)	200, 362, 639
BisI	GCNGC	1 cut(s)	212
BlsI	GCNGC	1 cut(s)	213
Bme1390I	CCNGG	4 cut(s)	377, 398, 424, 494
Bme18I	GGWCC	2 cut(s)	4, 510
BmeT110I	CYCGRG	1 cut(s)	254
BmgT120I	GGNCC	3 cut(s)	4, 373, 510
BmiI	GGNNCC	1 cut(s)	637
BmrFI	CCNGG	4 cut(s)	377, 398, 424, 494
BmsI	GCATC	2 cut(s)	226, 447
Bpu10I	CCTNAGC	1 cut(s)	434
BpuEI	CTTGAG	1 cut(s)	635
BpuMI	CCSGG	2 cut(s)	424, 494
Bsa29I	ATCGAT	1 cut(s)	550
BsaHI	GRCGYC	2 cut(s)	224, 636
BsaI	GGTCTC	1 cut(s)	295
BsaJI	CCNNGG	1 cut(s)	375
Bsc4I	CCNNNNNNNGG	2 cut(s)	286, 418
Bse118I	RCCGGY	1 cut(s)	638
BseBI	CCWGG	2 cut(s)	377, 398
BseCI	ATCGAT	1 cut(s)	550
BseDI	CCNNGG	1 cut(s)	375
BseGI	GGATG	2 cut(s)	241, 532
BseLI	CCNNNNNNNGG	2 cut(s)	286, 418
BseMII	CTCAG	4 cut(s)	200, 360, 448, 573
Bsh1236I	CGCG	1 cut(s)	629
Bsh1285I	CGRYCG	1 cut(s)	554
BshFI	GGCC	3 cut(s)	374, 380, 422
BshNI	GGYRCC	1 cut(s)	635
BshVI	ATCGAT	1 cut(s)	550
BsiEI	CGRYCG	1 cut(s)	554
BsiHKAI	GWGCWC	2 cut(s)	394, 627
BsiHKCI	CYCGRG	1 cut(s)	254
BsiSI	CCGG	4 cut(s)	423, 494, 620, 639
BslFI	GGGAC	1 cut(s)	163
BslI	CCNNNNNNNGG	2 cut(s)	286, 418
BsmAI	GTCTC	1 cut(s)	295
BsmFI	GGGAC	1 cut(s)	163
BsnI	GGCC	3 cut(s)	374, 380, 422
Bso31I	GGTCTC	1 cut(s)	295
BsoBI	CYCGRG	1 cut(s)	254
Bsp1286I	GDGCHC	2 cut(s)	394, 627
Bsp143I	GATC	2 cut(s)	547, 551
BspACI	CCGC	2 cut(s)	212, 456
BspANI	GGCC	3 cut(s)	374, 380, 422
BspCNI	CTCAG	4 cut(s)	199, 361, 447, 572
BspDI	ATCGAT	1 cut(s)	550
BspFNI	CGCG	1 cut(s)	629
BspLI	GGNNCC	1 cut(s)	637
BspT107I	GGYRCC	1 cut(s)	635
BspTNI	GGTCTC	1 cut(s)	295
BsrFI	RCCGGY	1 cut(s)	638
BssAI	RCCGGY	1 cut(s)	638
BssECI	CCNNGG	1 cut(s)	375
BssMI	GATC	2 cut(s)	547, 551
BssNI	GRCGYC	2 cut(s)	224, 636
Bst2UI	CCWGG	2 cut(s)	377, 398
Bst4CI	ACNGT	1 cut(s)	177
Bst6I	CTCTTC	1 cut(s)	264
BstACI	GRCGYC	2 cut(s)	224, 636
BstC8I	GCNNGC	5 cut(s)	382, 394, 456, 490, 627
BstDEI	CTNAG	4 cut(s)	186, 369, 434, 559
BstF5I	GGATG	2 cut(s)	241, 532
BstFNI	CGCG	1 cut(s)	629
BstH2I	RGCGCY	3 cut(s)	200, 362, 639
BstHHI	GCGC	4 cut(s)	199, 253, 361, 638
BstKTI	GATC	2 cut(s)	550, 554
BstMAI	GTCTC	1 cut(s)	295
BstMBI	GATC	2 cut(s)	547, 551
BstMCI	CGRYCG	1 cut(s)	554
BstMWI	GCNNNNNNNGC	4 cut(s)	196, 398, 460, 635
BstNI	CCWGG	2 cut(s)	377, 398
BstNSI	RCATGY	1 cut(s)	613
BstSCI	CCNGG	4 cut(s)	375, 396, 422, 492
BstUI	CGCG	1 cut(s)	629
Bsu15I	ATCGAT	1 cut(s)	550
BsuRI	GGCC	3 cut(s)	374, 380, 422
BsuTUI	ATCGAT	1 cut(s)	550
BtsCI	GGATG	2 cut(s)	241, 532
Cac8I	GCNNGC	5 cut(s)	382, 394, 456, 490, 627
CfoI	GCGC	4 cut(s)	199, 253, 361, 638
Cfr10I	RCCGGY	1 cut(s)	638
Cfr13I	GGNCC	3 cut(s)	4, 373, 510
ClaI	ATCGAT	1 cut(s)	550
CseI	GACGC	1 cut(s)	310
Csp6I	GTAC	1 cut(s)	159
CviAII	CATG	5 cut(s)	151, 305, 344, 385, 610
CviQI	GTAC	1 cut(s)	159
DdeI	CTNAG	4 cut(s)	186, 369, 434, 559
DinI	GGCGCC	1 cut(s)	637
DpnI	GATC	2 cut(s)	549, 553
DpnII	GATC	2 cut(s)	547, 551
DraIII	CACNNNGTG	1 cut(s)	248
EaeI	YGGCCR	2 cut(s)	378, 420
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Ecl136II	GAGCTC	1 cut(s)	392
Eco24I	GRGCYC	1 cut(s)	394
Eco31I	GGTCTC	1 cut(s)	295
Eco32I	GATATC	1 cut(s)	354
Eco47I	GGWCC	2 cut(s)	4, 510
Eco47III	AGCGCT	1 cut(s)	360
Eco53kI	GAGCTC	1 cut(s)	392
Eco57I	CTGAAG	1 cut(s)	504
Eco88I	CYCGRG	1 cut(s)	254
EcoICRI	GAGCTC	1 cut(s)	392
EcoO109I	RGGNCCY	1 cut(s)	373
EcoRII	CCWGG	2 cut(s)	375, 396
EcoRV	GATATC	1 cut(s)	354
EcoT38I	GRGCYC	1 cut(s)	394
EgeI	GGCGCC	1 cut(s)	637
EheI	GGCGCC	1 cut(s)	637
FaeI	CATG	5 cut(s)	154, 308, 347, 388, 613
FaqI	GGGAC	1 cut(s)	163
FatI	CATG	5 cut(s)	150, 304, 343, 384, 609
FauI	CCCGC	1 cut(s)	463
FblI	GTMKAC	1 cut(s)	227
Fnu4HI	GCNGC	1 cut(s)	212
FokI	GGATG	2 cut(s)	248, 539
FriOI	GRGCYC	1 cut(s)	394
Fsp4HI	GCNGC	1 cut(s)	212
FspBI	CTAG	1 cut(s)	245
GlaI	GCGC	4 cut(s)	198, 252, 360, 637
GluI	GCNGC	1 cut(s)	212
HaeII	RGCGCY	3 cut(s)	200, 362, 639
HaeIII	GGCC	3 cut(s)	374, 380, 422
HapII	CCGG	4 cut(s)	423, 494, 620, 639
HgaI	GACGC	1 cut(s)	310
HhaI	GCGC	4 cut(s)	199, 253, 361, 638
Hin1I	GRCGYC	2 cut(s)	224, 636
Hin1II	CATG	5 cut(s)	154, 308, 347, 388, 613
Hin6I	GCGC	4 cut(s)	197, 251, 359, 636
HinP1I	GCGC	4 cut(s)	197, 251, 359, 636
HincII	GTYRAC	1 cut(s)	228
HindII	GTYRAC	1 cut(s)	228
HinfI	GANTC	2 cut(s)	229, 427
HpaII	CCGG	4 cut(s)	423, 494, 620, 639
HphI	GGTGA	3 cut(s)	301, 422, 653
Hpy166II	GTNNAC	1 cut(s)	228
Hpy188I	TCNGA	2 cut(s)	370, 562
Hpy188III	TCNNGA	3 cut(s)	233, 588, 652
Hpy8I	GTNNAC	1 cut(s)	228
Hpy99I	CGWCG	5 cut(s)	205, 223, 226, 229, 470
HpyAV	CCTTC	1 cut(s)	23
HpyCH4III	ACNGT	1 cut(s)	177
HpyCH4IV	ACGT	1 cut(s)	224
HpyF10VI	GCNNNNNNNGC	4 cut(s)	196, 398, 460, 635
HpyF3I	CTNAG	4 cut(s)	186, 369, 434, 559
HpySE526I	ACGT	1 cut(s)	224
Hsp92I	GRCGYC	2 cut(s)	224, 636
Hsp92II	CATG	5 cut(s)	154, 308, 347, 388, 613
HspAI	GCGC	4 cut(s)	197, 251, 359, 636
KasI	GGCGCC	1 cut(s)	635
Kzo9I	GATC	2 cut(s)	547, 551
LmnI	GCTCC	3 cut(s)	244, 389, 622
LweI	GCATC	2 cut(s)	226, 447
MaeI	CTAG	1 cut(s)	245
MaeII	ACGT	1 cut(s)	224
MaeIII	GTNAC	2 cut(s)	307, 592
MalI	GATC	2 cut(s)	549, 553
MboI	GATC	2 cut(s)	547, 551
MboII	GAAGA	2 cut(s)	281, 553
MhlI	GDGCHC	2 cut(s)	394, 627
MlsI	TGGCCA	1 cut(s)	380
MluCI	AATT	2 cut(s)	35, 665
MluNI	TGGCCA	1 cut(s)	380
Mly113I	GGCGCC	1 cut(s)	636
MlyI	GAGTC	1 cut(s)	223
MnlI	CCTC	4 cut(s)	311, 341, 364, 443
Mox20I	TGGCCA	1 cut(s)	380
MscI	TGGCCA	1 cut(s)	380
MseI	TTAA	2 cut(s)	134, 602
MslI	CAYNNNNRTG	1 cut(s)	614
Msp20I	TGGCCA	1 cut(s)	380
MspI	CCGG	4 cut(s)	423, 494, 620, 639
MspR9I	CCNGG	4 cut(s)	377, 398, 424, 494
MvaI	CCWGG	2 cut(s)	377, 398
MvnI	CGCG	1 cut(s)	629
MwoI	GCNNNNNNNGC	4 cut(s)	196, 398, 460, 635
NarI	GGCGCC	1 cut(s)	636
NciI	CCSGG	2 cut(s)	424, 494
NdeII	GATC	2 cut(s)	547, 551
NlaIII	CATG	5 cut(s)	154, 308, 347, 388, 613
NlaIV	GGNNCC	1 cut(s)	637
NmuCI	GTSAC	1 cut(s)	307
NspI	RCATGY	1 cut(s)	613
PcsI	WCGNNNNNNNCGW	1 cut(s)	224
PfeI	GAWTC	1 cut(s)	427
PflFI	GACNNNGTC	1 cut(s)	223
PflMI	CCANNNNNTGG	1 cut(s)	418
PkrI	GCNGC	1 cut(s)	213
Ple19I	CGATCG	1 cut(s)	554
PleI	GAGTC	1 cut(s)	223
PluTI	GGCGCC	1 cut(s)	639
PpsI	GAGTC	1 cut(s)	223
PsiI	TTATAA	1 cut(s)	670
Psp124BI	GAGCTC	1 cut(s)	394
Psp6I	CCWGG	2 cut(s)	375, 396
PspGI	CCWGG	2 cut(s)	375, 396
PspN4I	GGNNCC	1 cut(s)	637
PspPI	GGNCC	3 cut(s)	4, 373, 510
PsyI	GACNNNGTC	1 cut(s)	223
PvuI	CGATCG	1 cut(s)	554
RsaI	GTAC	1 cut(s)	160
RsaNI	GTAC	1 cut(s)	159
RseI	CAYNNNNRTG	1 cut(s)	614
SacI	GAGCTC	1 cut(s)	394
SalI	GTCGAC	1 cut(s)	226
SaqAI	TTAA	2 cut(s)	134, 602
SatI	GCNGC	1 cut(s)	212
Sau3AI	GATC	2 cut(s)	547, 551
Sau96I	GGNCC	3 cut(s)	4, 373, 510
SchI	GAGTC	1 cut(s)	223
ScrFI	CCNGG	4 cut(s)	377, 398, 424, 494
SduI	GDGCHC	2 cut(s)	394, 627
SfaNI	GCATC	2 cut(s)	226, 447
SfoI	GGCGCC	1 cut(s)	637
SgrAI	CRCCGGYG	1 cut(s)	638
SinI	GGWCC	2 cut(s)	4, 510
SmiMI	CAYNNNNRTG	1 cut(s)	614
SmlI	CTYRAG	1 cut(s)	650
SmoI	CTYRAG	1 cut(s)	650
Sse9I	AATT	2 cut(s)	35, 665
SsiI	CCGC	2 cut(s)	212, 456
SspDI	GGCGCC	1 cut(s)	635
SspMI	CTAG	1 cut(s)	245
SstI	GAGCTC	1 cut(s)	394
StyD4I	CCNGG	4 cut(s)	375, 396, 422, 492
TaaI	ACNGT	1 cut(s)	177
TaiI	ACGT	1 cut(s)	227
TaqI	TCGA	7 cut(s)	27, 218, 227, 261, 465, 550, 554
TasI	AATT	2 cut(s)	35, 665
TauI	GCSGC	1 cut(s)	214
TfiI	GAWTC	1 cut(s)	427
Tru1I	TTAA	2 cut(s)	134, 602
Tru9I	TTAA	2 cut(s)	134, 602
TseFI	GTSAC	1 cut(s)	307
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	1 cut(s)	44
Tth111I	GACNNNGTC	1 cut(s)	223
Van91I	CCANNNNNTGG	1 cut(s)	418
VpaK11BI	GGWCC	2 cut(s)	4, 510
XceI	RCATGY	1 cut(s)	613
XmiI	GTMKAC	1 cut(s)	227
XspI	CTAG	1 cut(s)	245
ZraI	GACGTC	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.