pycom13g14390

BEST Arabidopsis thaliana protein match is

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Reverse (-)
10381243 .. 10383891
2649 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1944 bp
ATGGGCTCCCTTCGGTCGATCTTTGACCTTTCACCTGCTAAGTTCCCAAACGTTCACACATGGCGCAAATTAGCTCGCACCAGCCCCTCCAAGTACAGTTTCCAGCTGAAATTCAAACCAAAGCAGCATTTCCTTTCCTTTCTTGAACCACCAATGGCGGGTGCGCACTGCGCCGCCTCCCTTGTCATCGCACACCCAATCCACTCCACCGCCAAACCAGTCAAACCAATCCTCTCAGCCTCCGTTTCCGTACCGTCAAAACCCACCCGACGGAGAAACCATTTACGCCCCAAAATCCTCAAAACCCTAACTCGACCCTACCCGCCACCCAAAACCCCTCTCCTTCCCGAACTGCCCCCGACGGAACCTGTAATTCCCACTGAGTCCCCGGTAACTCCTTCCGAGAACGACTCCAACACCGAACTTAGCTCTGACCGAAGCGACGTCGTTGCCGCAGAAGGCGATAAAGTTGAAGAACTGAGCGTGTCTGTGGCGACCCCGGAGCAAAATGGCATTGTTGGTAAATTTTCTGCCAAGTCCGTCCTTAAATTTGGAGCGTATTTGGTTGGGGCTTATTTGTTTCAGGCTTTTTTTACCGTTTGGTTGCTGGGAAATGATAATCCTGATCAGGAAACTGGGAAGTCGAAAACTTTAAGCAAATCGAAAGGGAAGGCTTTGTATTCGAATGTTGGGTCTGAATTGGGCAATGTGATTTATTTGGACGAGATACAATTGGACGAGAGGATAGAAGAAATTAGAGCAATGGCGAGGGAAGCACGAAAGTCGGAGAAAAGGGAGTTGAAGAAGGGAAGTATTGGTGATGAAGATGATGTTTCTGATGCAAGGAATAGAATAGGTATCGAAAAAGAGGTCGGAGAGCGGTTGGTTAGGTTGCAGAGGAGTTTGAATTCTAAAAGGGAGAAGTTGCAGGGTCCATATGTGAGTAATATGGAAAAGAATGAGAATGTAGAAGCTGGGAATTCTAAAGAGGAGGATGGGACATTGCTATTTAAGAAAAAGGTCAAGTTTAAGGCCGAGGCGAAAAGCAATCCCAAGGGGTTTGGGGGTTTGGATGAGCATGGTGAATCTAGGAGGATAAAGAGAGGTTCGGGCGGTGTAGATACAGTGGCGGGAGATGCAAGTGTTGGTAGTGATGGTAAAGAATTGTTGGATTCGGATAATGATGAAAACCGGCAAAAGAGTGATATTGGACAAGGTGTTTCCAAGACCGTAGAGGACGAACCCAAGTTGTTGCAAAATGACGGGAAACATTTGGAGAAAGGAACTCGGAGTATGGATAGCGGAAAGGACATAGGAGCTGGAACTATTGAGCCACAAAATGGTACCGTCCAGAAGACAAGACGAGGGAAGTCCTCTGAAGGGGTAAAGTCAAGAAAATCAAGGGCGTTGGGGAAGAAAAAGTCTCCCTCAAAGAAAGAAATTCAGGAAACTACCATAAAATCTGGTGATAATGCTGCATTGAGTGTAAATGGCAGTTCAAAAAACAAAGAAGCTGAAAAGGAACCAGTGGCTAACAAAGTCAGTGGCAATCGATCAAAGAATGATATTGATCCGTGGTGGTTGGATCTTCCTTATGTTCTGGTTATTATGATCCGTAGAGGTTCTGGTAGTGAGGGGCAAGGCGGACTCTATACCTTAAAGCTCAGTTCTCAGCGCCAAAGCCAGAGTGATTTTTCCTATACTGTCGCTTTCGAACACCGCACTGATGCCAATAACTTCTGTATACTGTTGGAAACTTTTTTCGAAGATCTGGGTGATTTCAGGGCTGATATTGTTCCTTTACCAAACAAAGAACTTCGCAAAGCCATAAAGTCAGATAACATGAAGCTGATTTTTGTGAAGAGAGGGCAGCTTCAGCTGTATGCCGGGCAACCTTTTGAAGAAGTTGAGACAGCGTTGCGCTCTCTGGTTGAACAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

648

Amino Acids

71.36

Weight (kDa)

9.25

Isoelectric Point (pI)

44.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013202)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 43
AatII GACGTC 1 cut(s) 447
Acc16I TGCGCA 1 cut(s) 165
Acc36I ACCTGC 1 cut(s) 43
Acc65I GGTACC 1 cut(s) 1343
AccB1I GGYRCC 1 cut(s) 1343
AccB7I CCANNNNNTGG 1 cut(s) 1340
AccBSI CCGCTC 1 cut(s) 880
AccI GTMKAC 1 cut(s) 1744
AclI AACGTT 1 cut(s) 51
AclWI GGATC 3 cut(s) 1565, 1593, 1606
AcsI RAATTY 6 cut(s) 110, 524, 548, 907, 979, 1440
AcuI CTGAAG 2 cut(s) 1398, 1859
AcyI GRCGYC 1 cut(s) 444
AfaI GTAC 3 cut(s) 95, 252, 1345
AfiI CCNNNNNNNGG 4 cut(s) 158, 270, 1340, 1380
AgsI TTSAA 8 cut(s) 115, 146, 473, 802, 907, 1500, 1901, 1934
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
Alw26I GTCTC 2 cut(s) 1428, 1904
AlwI GGATC 3 cut(s) 1565, 1593, 1606
AoxI GGCC 1 cut(s) 1032
ApeKI GCWGC 3 cut(s) 124, 1475, 1870
ApoI RAATTY 6 cut(s) 110, 524, 548, 907, 979, 1440
ArsI GACNNNNNNTTYG 4 cut(s) 677, 709, 855, 887
Asp718I GGTACC 1 cut(s) 1343
AspLEI GCGC 5 cut(s) 66, 166, 173, 1677, 1923
AspS9I GGNCC 1 cut(s) 932
AsuC2I CCSGG 3 cut(s) 389, 500, 1888
AsuHPI GGTGA 5 cut(s) 24, 830, 1094, 1478, 1787
AsuII TTCGAA 3 cut(s) 683, 1713, 1764
AvaII GGWCC 1 cut(s) 932
BanI GGYRCC 1 cut(s) 1343
BanII GRGCYC 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 1361
BbvI GCAGC 3 cut(s) 136, 1462, 1882
BccI CCATC 2 cut(s) 989, 1148
BcgI CGANNNNNNTGC 4 cut(s) 431, 465, 765, 799
BclI TGATCA 1 cut(s) 625
BcnI CCSGG 3 cut(s) 389, 500, 1888
BcoDI GTCTC 2 cut(s) 1428, 1904
BfaI CTAG 1 cut(s) 1089
BfoI RGCGCY 1 cut(s) 1678
BfuAI ACCTGC 1 cut(s) 43
BglII AGATCT 1 cut(s) 1768
BisI GCNGC 5 cut(s) 125, 174, 453, 1476, 1871
BlsI GCNGC 5 cut(s) 126, 175, 454, 1477, 1872
Bme1390I CCNGG 3 cut(s) 389, 500, 1888
Bme18I GGWCC 1 cut(s) 932
BmgT120I GGNCC 1 cut(s) 932
BmiI GGNNCC 5 cut(s) 7, 366, 933, 1345, 1524
BmrFI CCNGG 3 cut(s) 389, 500, 1888
BmrI ACTGGG 1 cut(s) 645
BmsI GCATC 3 cut(s) 829, 1126, 1717
BmuI ACTGGG 1 cut(s) 645
BpiI GAAGAC 1 cut(s) 1361
BplI GAGNNNNNCTC 2 cut(s) 395, 427
Bpu14I TTCGAA 3 cut(s) 683, 1713, 1764
BpuMI CCSGG 3 cut(s) 389, 500, 1888
Bsa29I ATCGAT 1 cut(s) 1552
BsaBI GATNNNNATC 1 cut(s) 1569
BsaHI GRCGYC 1 cut(s) 444
BsaJI CCNNGG 5 cut(s) 387, 498, 1035, 1053, 1574
Bsc4I CCNNNNNNNGG 4 cut(s) 158, 270, 1340, 1380
Bse118I RCCGGY 1 cut(s) 1191
Bse1I ACTGG 3 cut(s) 218, 640, 1526
Bse3DI GCAATG 3 cut(s) 712, 768, 1001
Bse8I GATNNNNATC 1 cut(s) 1569
BseCI ATCGAT 1 cut(s) 1552
BseDI CCNNGG 5 cut(s) 387, 498, 1035, 1053, 1574
BseGI GGATG 2 cut(s) 1000, 1078
BseJI GATNNNNATC 1 cut(s) 1569
BseLI CCNNNNNNNGG 4 cut(s) 158, 270, 1340, 1380
BseMI GCAATG 3 cut(s) 712, 768, 1001
BseMII CTCAG 5 cut(s) 249, 372, 470, 1678, 1685
BseNI ACTGG 3 cut(s) 218, 640, 1526
BseRI GAGGAG 2 cut(s) 913, 1004
BseXI GCAGC 3 cut(s) 136, 1462, 1882
BseYI CCCAGC 2 cut(s) 607, 974
Bsh1285I CGRYCG 1 cut(s) 17
BshFI GGCC 1 cut(s) 1034
BshNI GGYRCC 1 cut(s) 1343
BshVI ATCGAT 1 cut(s) 1552
BsiEI CGRYCG 1 cut(s) 17
BsiSI CCGG 4 cut(s) 389, 500, 1192, 1887
BslFI GGGAC 2 cut(s) 370, 1012
BslI CCNNNNNNNGG 4 cut(s) 158, 270, 1340, 1380
BsmAI GTCTC 2 cut(s) 1428, 1904
BsmFI GGGAC 2 cut(s) 370, 1012
BsnI GGCC 1 cut(s) 1034
Bsp119I TTCGAA 3 cut(s) 683, 1713, 1764
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 7 cut(s) 18, 625, 1553, 1570, 1585, 1611, 1768
BspANI GGCC 1 cut(s) 1034
BspCNI CTCAG 5 cut(s) 248, 373, 471, 1677, 1684
BspDI ATCGAT 1 cut(s) 1552
BspLI GGNNCC 5 cut(s) 7, 366, 933, 1345, 1524
BspMI ACCTGC 1 cut(s) 43
BspPI GGATC 3 cut(s) 1565, 1593, 1606
BspT104I TTCGAA 3 cut(s) 683, 1713, 1764
BspT107I GGYRCC 1 cut(s) 1343
BsrBI CCGCTC 1 cut(s) 880
BsrDI GCAATG 3 cut(s) 712, 768, 1001
BsrFI RCCGGY 1 cut(s) 1191
BsrI ACTGG 3 cut(s) 218, 640, 1526
BssAI RCCGGY 1 cut(s) 1191
BssECI CCNNGG 5 cut(s) 387, 498, 1035, 1053, 1574
BssMI GATC 7 cut(s) 18, 625, 1553, 1570, 1585, 1611, 1768
BssNAI GTATAC 1 cut(s) 1745
BssNI GRCGYC 1 cut(s) 444
BssT1I CCWWGG 1 cut(s) 1053
Bst1107I GTATAC 1 cut(s) 1745
Bst4CI ACNGT 8 cut(s) 98, 255, 598, 1126, 1231, 1348, 1705, 1749
Bst6I CTCTTC 1 cut(s) 1856
BstACI GRCGYC 1 cut(s) 444
BstBI TTCGAA 3 cut(s) 683, 1713, 1764
BstC8I GCNNGC 1 cut(s) 76
BstDEI CTNAG 7 cut(s) 39, 235, 381, 425, 479, 1664, 1671
BstDSI CCRYGG 1 cut(s) 1574
BstF5I GGATG 2 cut(s) 1000, 1078
BstH2I RGCGCY 1 cut(s) 1678
BstHHI GCGC 5 cut(s) 66, 166, 173, 1677, 1923
BstKTI GATC 7 cut(s) 21, 628, 1556, 1573, 1588, 1614, 1771
BstMAI GTCTC 2 cut(s) 1428, 1904
BstMBI GATC 7 cut(s) 18, 625, 1553, 1570, 1585, 1611, 1768
BstMCI CGRYCG 1 cut(s) 17
BstMWI GCNNNNNNNGC 4 cut(s) 170, 773, 1136, 1876
BstSCI CCNGG 3 cut(s) 387, 498, 1886
BstV1I GCAGC 3 cut(s) 136, 1462, 1882
BstV2I GAAGAC 1 cut(s) 1361
BstX2I RGATCY 2 cut(s) 1585, 1768
BstYI RGATCY 2 cut(s) 1585, 1768
BstZ17I GTATAC 1 cut(s) 1745
Bsu15I ATCGAT 1 cut(s) 1552
BsuRI GGCC 1 cut(s) 1034
BsuTUI ATCGAT 1 cut(s) 1552
BtgI CCRYGG 1 cut(s) 1574
BtgZI GCGATG 1 cut(s) 172
BtsCI GGATG 2 cut(s) 1000, 1078
BtsI GCAGTG 1 cut(s) 166
BtsIMutI CAGTG 6 cut(s) 166, 378, 1131, 1533, 1549, 1722
BveI ACCTGC 1 cut(s) 43
Cac8I GCNNGC 1 cut(s) 76
CfoI GCGC 5 cut(s) 66, 166, 173, 1677, 1923
Cfr10I RCCGGY 1 cut(s) 1191
Cfr13I GGNCC 1 cut(s) 932
ClaI ATCGAT 1 cut(s) 1552
Csp6I GTAC 3 cut(s) 94, 251, 1344
CspCI CAANNNNNGTGG 2 cut(s) 1525, 1560
CviAII CATG 3 cut(s) 60, 1079, 1843
CviQI GTAC 3 cut(s) 94, 251, 1344
DdeI CTNAG 7 cut(s) 39, 235, 381, 425, 479, 1664, 1671
DpnI GATC 7 cut(s) 20, 627, 1555, 1572, 1587, 1613, 1770
DpnII GATC 7 cut(s) 18, 625, 1553, 1570, 1585, 1611, 1768
Eam1104I CTCTTC 1 cut(s) 1856
EarI CTCTTC 1 cut(s) 1856
EciI GGCGGA 1 cut(s) 1659
Eco130I CCWWGG 1 cut(s) 1053
Eco24I GRGCYC 1 cut(s) 8
Eco47I GGWCC 1 cut(s) 932
Eco57I CTGAAG 2 cut(s) 1398, 1859
EcoRI GAATTC 2 cut(s) 907, 979
EcoT14I CCWWGG 1 cut(s) 1053
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 1053
FaeI CATG 3 cut(s) 63, 1082, 1846
FaqI GGGAC 2 cut(s) 370, 1012
FatI CATG 3 cut(s) 59, 1078, 1842
FauI CCCGC 3 cut(s) 151, 330, 1123
FauNDI CATATG 1 cut(s) 937
FbaI TGATCA 1 cut(s) 625
FblI GTMKAC 1 cut(s) 1744
Fnu4HI GCNGC 5 cut(s) 125, 174, 453, 1476, 1871
FokI GGATG 2 cut(s) 1007, 1085
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 5 cut(s) 125, 174, 453, 1476, 1871
FspAI RTGCGCAY 1 cut(s) 165
FspBI CTAG 1 cut(s) 1089
FspI TGCGCA 1 cut(s) 165
GlaI GCGC 5 cut(s) 65, 165, 172, 1676, 1922
GluI GCNGC 5 cut(s) 125, 174, 453, 1476, 1871
GsaI CCCAGC 2 cut(s) 611, 978
HaeII RGCGCY 1 cut(s) 1678
HaeIII GGCC 1 cut(s) 1034
HapII CCGG 4 cut(s) 389, 500, 1192, 1887
HhaI GCGC 5 cut(s) 66, 166, 173, 1677, 1923
Hin1I GRCGYC 1 cut(s) 444
Hin1II CATG 3 cut(s) 63, 1082, 1846
Hin6I GCGC 5 cut(s) 64, 164, 171, 1675, 1921
HinP1I GCGC 5 cut(s) 64, 164, 171, 1675, 1921
HinfI GANTC 5 cut(s) 383, 410, 1085, 1172, 1647
HpaII CCGG 4 cut(s) 389, 500, 1192, 1887
HphI GGTGA 5 cut(s) 24, 830, 1094, 1478, 1787
Hpy166II GTNNAC 2 cut(s) 55, 1745
Hpy188III TCNNGA 7 cut(s) 143, 347, 623, 629, 1351, 1392, 1445
Hpy8I GTNNAC 2 cut(s) 55, 1745
Hpy99I CGWCG 4 cut(s) 273, 364, 446, 449
HpyAV CCTTC 7 cut(s) 20, 353, 408, 452, 664, 799, 1373
HpyCH4III ACNGT 8 cut(s) 98, 255, 598, 1126, 1231, 1348, 1705, 1749
HpyCH4IV ACGT 2 cut(s) 51, 444
HpyCH4V TGCA 6 cut(s) 842, 895, 928, 1139, 1255, 1478
HpyF10VI GCNNNNNNNGC 4 cut(s) 170, 773, 1136, 1876
HpyF3I CTNAG 7 cut(s) 39, 235, 381, 425, 479, 1664, 1671
HpySE526I ACGT 2 cut(s) 51, 444
Hsp92I GRCGYC 1 cut(s) 444
Hsp92II CATG 3 cut(s) 63, 1082, 1846
HspAI GCGC 5 cut(s) 64, 164, 171, 1675, 1921
KpnI GGTACC 1 cut(s) 1347
Ksp22I TGATCA 1 cut(s) 625
Kzo9I GATC 7 cut(s) 18, 625, 1553, 1570, 1585, 1611, 1768
LmnI GCTCC 4 cut(s) 11, 502, 554, 1316
Lsp1109I GCAGC 3 cut(s) 136, 1462, 1882
LweI GCATC 3 cut(s) 829, 1126, 1717
MaeI CTAG 1 cut(s) 1089
MaeII ACGT 2 cut(s) 51, 444
MaeIII GTNAC 1 cut(s) 391
MalI GATC 7 cut(s) 20, 627, 1555, 1572, 1587, 1613, 1770
MbiI CCGCTC 1 cut(s) 880
MboI GATC 7 cut(s) 18, 625, 1553, 1570, 1585, 1611, 1768
MfeI CAATTG 1 cut(s) 731
MflI RGATCY 2 cut(s) 1585, 1768
MhlI GDGCHC 1 cut(s) 8
MlyI GAGTC 3 cut(s) 392, 404, 1641
MmeI TCCRAC 6 cut(s) 438, 765, 853, 1149, 1563, 1731
MseI TTAA 5 cut(s) 546, 653, 1011, 1029, 1658
MspA1I CMGCKG 2 cut(s) 106, 1879
MspI CCGG 4 cut(s) 389, 500, 1192, 1887
MspR9I CCNGG 3 cut(s) 389, 500, 1888
MunI CAATTG 1 cut(s) 731
MwoI GCNNNNNNNGC 4 cut(s) 170, 773, 1136, 1876
NciI CCSGG 3 cut(s) 389, 500, 1888
NdeI CATATG 1 cut(s) 937
NdeII GATC 7 cut(s) 18, 625, 1553, 1570, 1585, 1611, 1768
NlaIII CATG 3 cut(s) 63, 1082, 1846
NlaIV GGNNCC 5 cut(s) 7, 366, 933, 1345, 1524
NmeAIII GCCGAG 1 cut(s) 1060
NsbI TGCGCA 1 cut(s) 165
NspV TTCGAA 3 cut(s) 683, 1713, 1764
PaqCI CACCTGC 1 cut(s) 43
PfeI GAWTC 2 cut(s) 1085, 1172
PflMI CCANNNNNTGG 1 cut(s) 1340
PkrI GCNGC 5 cut(s) 126, 175, 454, 1477, 1872
PleI GAGTC 3 cut(s) 391, 404, 1641
PpsI GAGTC 3 cut(s) 391, 404, 1641
Psp1406I AACGTT 1 cut(s) 51
PspFI CCCAGC 2 cut(s) 607, 974
PspN4I GGNNCC 5 cut(s) 7, 366, 933, 1345, 1524
PspPI GGNCC 1 cut(s) 932
PsuI RGATCY 2 cut(s) 1585, 1768
PvuII CAGCTG 2 cut(s) 106, 1879
RsaI GTAC 3 cut(s) 95, 252, 1345
RsaNI GTAC 3 cut(s) 94, 251, 1344
SaqAI TTAA 5 cut(s) 546, 653, 1011, 1029, 1658
SatI GCNGC 5 cut(s) 125, 174, 453, 1476, 1871
Sau3AI GATC 7 cut(s) 18, 625, 1553, 1570, 1585, 1611, 1768
Sau96I GGNCC 1 cut(s) 932
SchI GAGTC 3 cut(s) 392, 404, 1641
ScrFI CCNGG 3 cut(s) 389, 500, 1888
SduI GDGCHC 1 cut(s) 8
SfaNI GCATC 3 cut(s) 829, 1126, 1717
SfuI TTCGAA 3 cut(s) 683, 1713, 1764
SinI GGWCC 1 cut(s) 932
SspMI CTAG 1 cut(s) 1089
StyD4I CCNGG 3 cut(s) 387, 498, 1886
StyI CCWWGG 1 cut(s) 1053
TaaI ACNGT 8 cut(s) 98, 255, 598, 1126, 1231, 1348, 1705, 1749
TaiI ACGT 2 cut(s) 54, 447
TaqI TCGA 9 cut(s) 17, 313, 644, 662, 683, 861, 1552, 1713, 1764
TaqII GACCGA 1 cut(s) 450
TatI WGTACW 1 cut(s) 93
TauI GCSGC 2 cut(s) 176, 455
TfiI GAWTC 2 cut(s) 1085, 1172
Tru1I TTAA 5 cut(s) 546, 653, 1011, 1029, 1658
Tru9I TTAA 5 cut(s) 546, 653, 1011, 1029, 1658
TscAI CASTG 6 cut(s) 173, 385, 1131, 1533, 1549, 1729
TseI GCWGC 3 cut(s) 124, 1475, 1870
TspDTI ATGAA 3 cut(s) 837, 1200, 1859
TspGWI ACGGA 7 cut(s) 232, 238, 286, 377, 529, 1563, 1604
TspRI CASTG 6 cut(s) 173, 385, 1131, 1533, 1549, 1729
Van91I CCANNNNNTGG 1 cut(s) 1340
VpaK11BI GGWCC 1 cut(s) 932
XapI RAATTY 6 cut(s) 110, 524, 548, 907, 979, 1440
XmiI GTMKAC 1 cut(s) 1744
XspI CTAG 1 cut(s) 1089
ZraI GACGTC 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.