Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0008929

Physical Location & Seq

Genomic Coordinates Reverse (-)

10648819 .. 10650950

Gene Structure 2132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGCTCTTCACAAGCCAGAATTTGAGTTTGATGCAGTTCGTCTGGAGTTGGAACTGTTTAGCCCTGAAATTGCTGAAAAGCCTTATGTAGTTGCATTTAACAAAATGGACCTTCCAGATGCTTATGAAAACTGGTCATCATTCAAAGAAAATTTAGAAGGTACTCATGAAGTAAGCTCTGCTGCTTATGAGCCTCTACGAGAAAATAAAGTGGCCGAGGAGGAGTTCCCAGGTCTATTTACTTTATTTTTTTCTGTATTAAAAAGGTTTCTGAATCTAAATGCATACATATATTATCTTGTGGATTTTGTTTTATACTCACATTATCACACAGACTATAGGGGAAACCAGTTGTTTTGTTATAAAAGGAGCTCACGTAGAAATAATTTGGGTGAGCCAATTTGTGAGATTCTCTTTATACATTTGTTATCTCAATCAGTTAATTATAAATTGAGAGTTATTTCTTTCATTTTATTTGTTCCGTTTGGTGCTCTAGCACAACAATTGGTATCAGAGCCACTAGGCTCATCCGTATCAAATTTTGTATTTGAAACTTGCTTGATGAAGATGGTTGTTCAACTGGAATCGGGAGGCACGCATCCTTGGCCGGAATCACACGCTTCGCATTTGGCAAAAACAACAGTTCAAAATGCAAAGTTTGAAGTTGAAAAGTTTGATGGAACAAATAACTTTGGTATGTGGCAATGTGAGGTTAAAGATGTGTTGGCTCAACAAGATTTGGACTTGACGTTAGAAGACAAGTTGGAGGATATGGAAGAAGCTAAGTGGAATAAGTTAAATCGAATGGCTTGCTCTACGATTCGCTTATGTCTTGCAAAACCTCAAAAGTATTTTGTCATGCGAGAAACATCAGCTAAGTCGCTATGGCAAAAATTGGAGGACAAGTACATGACAAAGAGCATCGAAAATCGCCTCCATTTGAAAAAGCAGTTGTACCGATTCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009528 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009657 GO:0009658 GO:0009668 GO:0009706 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010027 GO:0010154 GO:0010467 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019866 GO:0022414 GO:0022613 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0042170 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061024 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1967 GTP1_OBG MMR_HSR1

Protein Analysis

323

Amino Acids

37.69

Weight (kDa)

5.97

Isoelectric Point (pI)

45.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Retrotran_gag_2	PF14223	254 - 322	6.1e-08	gag-polypeptide of LTR copia-type

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00300
fragaria_vesca	FvH4_1g10045 FvH4_1g25743 FvH4_2g16991 FvH4_2g31701 FvH4_4g08662 FvH4_6g44103 FvH4_6g48812
malus_domestica	MD04G1222900.v1.1 MD05G1232300.v1.1 MD05G1288100.v1.1 MD12G1229000.v1.1
prunus_persica	Prupe.1G257900_v2.0.a1
pyrus_communis	pycom13g14690
rosa_chinensis	RchiOBHm_Chr2g0123731 RchiOBHm_Chr2g0123741 RchiOBHm_Chr2g0157311 RchiOBHm_Chr7g0200891
rosa_roxburghii	Rroxscaffold_7G00215990
rosa_wichuraiana	Rw1G024090 Rw2G038200 Rw6G012570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	363, 447
AcoI	YGGCCR	2 cut(s)	213, 605
AcsI	RAATTY	3 cut(s)	20, 151, 538
AfaI	GTAC	3 cut(s)	163, 908, 956
AgsI	TTSAA	7 cut(s)	145, 551, 578, 647, 662, 668, 943
AjnI	CCWGG	1 cut(s)	229
AluBI	AGCT	4 cut(s)	177, 372, 782, 875
AluI	AGCT	4 cut(s)	177, 372, 782, 875
Alw21I	GWGCWC	2 cut(s)	374, 493
AoxI	GGCC	2 cut(s)	213, 605
ApeKI	GCWGC	1 cut(s)	182
ApoI	RAATTY	3 cut(s)	20, 151, 538
AspS9I	GGNCC	1 cut(s)	109
AsuHPI	GGTGA	1 cut(s)	404
AvaII	GGWCC	1 cut(s)	109
BanII	GRGCYC	1 cut(s)	374
BbsI	GAAGAC	1 cut(s)	762
Bbv12I	GWGCWC	2 cut(s)	374, 493
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	2 cut(s)	562, 671
BcgI	CGANNNNNNTGC	2 cut(s)	792, 826
BciT130I	CCWGG	1 cut(s)	231
BfaI	CTAG	2 cut(s)	494, 521
BfmI	CTRYAG	1 cut(s)	337
BisI	GCNGC	1 cut(s)	183
BlsI	GCNGC	1 cut(s)	184
Bme1390I	CCNGG	1 cut(s)	231
Bme18I	GGWCC	1 cut(s)	109
BmgT120I	GGNCC	1 cut(s)	109
BmrFI	CCNGG	1 cut(s)	231
BmsI	GCATC	4 cut(s)	22, 109, 607, 930
BpiI	GAAGAC	1 cut(s)	762
BpmI	CTGGAG	1 cut(s)	65
BsaAI	YACGTR	1 cut(s)	377
BsaJI	CCNNGG	3 cut(s)	216, 229, 602
BsaXI	ACNNNNNCTCC	4 cut(s)	361, 391, 890, 920
Bse1I	ACTGG	3 cut(s)	137, 349, 585
Bse3DI	GCAATG	1 cut(s)	710
BseBI	CCWGG	1 cut(s)	231
BseDI	CCNNGG	3 cut(s)	216, 229, 602
BseGI	GGATG	2 cut(s)	527, 598
BseMI	GCAATG	1 cut(s)	710
BseNI	ACTGG	3 cut(s)	137, 349, 585
BseRI	GAGGAG	2 cut(s)	233, 236
BseXI	GCAGC	1 cut(s)	169
BshFI	GGCC	2 cut(s)	215, 607
BsiHKAI	GWGCWC	2 cut(s)	374, 493
BsiSI	CCGG	1 cut(s)	608
BsnI	GGCC	2 cut(s)	215, 607
Bsp1286I	GDGCHC	2 cut(s)	374, 493
BspANI	GGCC	2 cut(s)	215, 607
BspHI	TCATGA	1 cut(s)	166
BspQI	GCTCTTC	1 cut(s)	12
BsrDI	GCAATG	1 cut(s)	710
BsrI	ACTGG	3 cut(s)	137, 349, 585
BssECI	CCNNGG	3 cut(s)	216, 229, 602
BssT1I	CCWWGG	1 cut(s)	602
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	2 cut(s)	57, 643
Bst6I	CTCTTC	1 cut(s)	12
BstBAI	YACGTR	1 cut(s)	377
BstC8I	GCNNGC	2 cut(s)	596, 811
BstDEI	CTNAG	2 cut(s)	783, 876
BstF5I	GGATG	2 cut(s)	527, 598
BstMWI	GCNNNNNNNGC	1 cut(s)	604
BstNI	CCWGG	1 cut(s)	231
BstSCI	CCNGG	1 cut(s)	229
BstSFI	CTRYAG	1 cut(s)	337
BstV1I	GCAGC	1 cut(s)	169
BstV2I	GAAGAC	1 cut(s)	762
BsuRI	GGCC	2 cut(s)	215, 607
BtsCI	GGATG	2 cut(s)	527, 598
Cac8I	GCNNGC	2 cut(s)	596, 811
CciI	TCATGA	1 cut(s)	166
Cfr13I	GGNCC	1 cut(s)	109
Csp6I	GTAC	3 cut(s)	162, 907, 955
CviAII	CATG	3 cut(s)	167, 859, 910
CviQI	GTAC	3 cut(s)	162, 907, 955
DdeI	CTNAG	2 cut(s)	783, 876
EaeI	YGGCCR	2 cut(s)	213, 605
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
Ecl136II	GAGCTC	1 cut(s)	372
Eco130I	CCWWGG	1 cut(s)	602
Eco24I	GRGCYC	1 cut(s)	374
Eco47I	GGWCC	1 cut(s)	109
Eco53kI	GAGCTC	1 cut(s)	372
EcoICRI	GAGCTC	1 cut(s)	372
EcoRII	CCWGG	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	602
EcoT22I	ATGCAT	1 cut(s)	286
EcoT38I	GRGCYC	1 cut(s)	374
ErhI	CCWWGG	1 cut(s)	602
FaeI	CATG	3 cut(s)	170, 862, 913
FatI	CATG	3 cut(s)	166, 858, 909
Fnu4HI	GCNGC	1 cut(s)	183
FokI	GGATG	2 cut(s)	514, 585
FriOI	GRGCYC	1 cut(s)	374
Fsp4HI	GCNGC	1 cut(s)	183
FspBI	CTAG	2 cut(s)	494, 521
GluI	GCNGC	1 cut(s)	183
GsuI	CTGGAG	1 cut(s)	65
HaeIII	GGCC	2 cut(s)	215, 607
HapII	CCGG	1 cut(s)	608
Hin1II	CATG	3 cut(s)	170, 862, 913
HinfI	GANTC	6 cut(s)	274, 409, 584, 611, 820, 960
HpaII	CCGG	1 cut(s)	608
HphI	GGTGA	1 cut(s)	404
Hpy188I	TCNGA	2 cut(s)	273, 514
Hpy188III	TCNNGA	4 cut(s)	44, 116, 167, 588
HpyAV	CCTTC	2 cut(s)	122, 152
HpyCH4III	ACNGT	2 cut(s)	57, 643
HpyCH4IV	ACGT	2 cut(s)	376, 749
HpyCH4V	TGCA	5 cut(s)	35, 95, 284, 653, 836
HpyF10VI	GCNNNNNNNGC	1 cut(s)	604
HpyF3I	CTNAG	2 cut(s)	783, 876
HpySE526I	ACGT	2 cut(s)	376, 749
Hsp92II	CATG	3 cut(s)	170, 862, 913
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	1 cut(s)	369
Lsp1109I	GCAGC	1 cut(s)	169
LweI	GCATC	4 cut(s)	22, 109, 607, 930
MaeI	CTAG	2 cut(s)	494, 521
MaeII	ACGT	2 cut(s)	376, 749
MboII	GAAGA	3 cut(s)	577, 767, 788
MfeI	CAATTG	1 cut(s)	503
MhlI	GDGCHC	2 cut(s)	374, 493
MmeI	TCCRAC	2 cut(s)	30, 744
MnlI	CCTC	9 cut(s)	204, 211, 214, 584, 703, 760, 852, 892, 944
Mph1103I	ATGCAT	1 cut(s)	286
MseI	TTAA	6 cut(s)	99, 260, 441, 714, 797, 967
MspI	CCGG	1 cut(s)	608
MspR9I	CCNGG	1 cut(s)	231
MunI	CAATTG	1 cut(s)	503
MvaI	CCWGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	1 cut(s)	604
NlaIII	CATG	3 cut(s)	170, 862, 913
NmeAIII	GCCGAG	1 cut(s)	241
NsiI	ATGCAT	1 cut(s)	286
PagI	TCATGA	1 cut(s)	166
PciSI	GCTCTTC	1 cut(s)	12
PfeI	GAWTC	6 cut(s)	274, 409, 584, 611, 820, 960
PkrI	GCNGC	1 cut(s)	184
Ppu21I	YACGTR	1 cut(s)	377
PsiI	TTATAA	2 cut(s)	363, 447
Psp124BI	GAGCTC	1 cut(s)	374
Psp6I	CCWGG	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	229
PspPI	GGNCC	1 cut(s)	109
RsaI	GTAC	3 cut(s)	163, 908, 956
RsaNI	GTAC	3 cut(s)	162, 907, 955
SacI	GAGCTC	1 cut(s)	374
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	6 cut(s)	99, 260, 441, 714, 797, 967
SatI	GCNGC	1 cut(s)	183
Sau96I	GGNCC	1 cut(s)	109
ScrFI	CCNGG	1 cut(s)	231
SduI	GDGCHC	2 cut(s)	374, 493
SfaNI	GCATC	4 cut(s)	22, 109, 607, 930
SfcI	CTRYAG	1 cut(s)	337
SinI	GGWCC	1 cut(s)	109
SspMI	CTAG	2 cut(s)	494, 521
SstI	GAGCTC	1 cut(s)	374
StyD4I	CCNGG	1 cut(s)	229
StyI	CCWWGG	1 cut(s)	602
TaaI	ACNGT	2 cut(s)	57, 643
TaiI	ACGT	2 cut(s)	379, 752
TaqI	TCGA	2 cut(s)	802, 924
TatI	WGTACW	1 cut(s)	906
TfiI	GAWTC	6 cut(s)	274, 409, 584, 611, 820, 960
Tru1I	TTAA	6 cut(s)	99, 260, 441, 714, 797, 967
Tru9I	TTAA	6 cut(s)	99, 260, 441, 714, 797, 967
TseI	GCWGC	1 cut(s)	182
TspDTI	ATGAA	4 cut(s)	141, 183, 457, 578
TspGWI	ACGGA	2 cut(s)	471, 520
VpaK11BI	GGWCC	1 cut(s)	109
XapI	RAATTY	3 cut(s)	20, 151, 538
XspI	CTAG	2 cut(s)	494, 521
Zsp2I	ATGCAT	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.