pycom13g17740

rRNA-processing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0008484
Physical Location & Seq
Forward (+)
13578159 .. 13582507
4349 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1383 bp
ATGGCTCACGGTGGCTACAGCAAGCGGCGGGTGAACCCCGCCGGACGTCGGTCCAAGTCGGCCTTGGGGCCGGAGAAGAAGCCCAAGTCGGTCACCCTCAAAAACCAGATACGCTCCATCGAGCGCATGCTCCGTAAGAATTTACCAGCTGAAGTTAGGGAGGCTCAGGAAAAGAAGTTGGAAGGGTTCAAGAAACAGCAGGAGATTCATTCCCGTCTCGCTGTGGAACGCAAAATATTTATGCGTGACAGGAAGATAAAGTTTTTTGAGAGAAGAAAGATAGAGAGAAGATTAAGACGTCTGGAGAAACTTCAACGTGCTTCTTCTGGTCAGGCACAAGATGCAGAGATTTTGTTGCAACTTTCCAAATTGAAAGAAGATCTTGAATATGTTAGGTTCTTTCCCAAGACCGAAAAATATGTCTCGTTGTTTACTGGAGGTGAAGATACAGATGTGATTGATAAGAGAAATAAGTTGCGTAAGCAGATTAAGGCCAATATAGTTGCTGCAGCAGCTAGCGGAAAGGATTTGGAAGAAACAGGGAGTGAGGACGACGGGCTTCTGGATATGAGCGAAGATGATTTCTTCCTAAATGGGAGTTCTAGTGATGAAGCAGATGCAGACGATGAATGGACAGATAAGAGTGCAAAGGAACAGGCTTCCAGTGCTTCTGGAAAAGCAACTTCTGGCATGTCCAGTGATGAGAGAAATCAGCGACAGATTTCTGCTAGAGCTTTGATGCCTCCACCCCGGCCATCCAGCAATTCTCGCTCAAGTTCAGTTCGTGCACAGTCAAGGTTTGGTCCTTCATCGAGCAAAAATTCCTCAAAAAAGCCTGCTGAAATGACCACATCGAGCAATACATCAAATAGCAGAAGTGGAACTTCCTTCAATACATCAAATAGCAATACATCAAGTAGCAGAAGTGAAACTTCCTTCAAAGATAGGGGATCCTCTAATTCAACTGCTGGTCAAAGTAGCAATTTGAGCTCCAACTCTGATGCTCATAAACCCCGTAGAAAGAGGAGGCCAAAGAAGAAAAAGCAGCAGGTTCGCGTTACTTGGATGAGGGGAAGTTGCTTGGTGCGGATGCGGACCTTTTCTTTTAAGGATTTGATGGCTTTGAGTTGTTATACGAAATTCTTACAGCTCAGTCTCGACAATGAAGTGTGTATTTTCTTTTTGTATCGGTCTTTGGTTGGAAACCGGTGCTTACTGCTCAATGTAACGATCAGTCATAACTCCATGCCTACTCACTCCGAGTTGGGCTCGATTTATCTTGAGAATGTTTCTGTTGCAACTGTACAAACTCCCGATCTAGTGAGAATCACAAAATCCTTGGATGGATATACTTTGTACTGGATTTGCTTGCGGAAGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Efg1

Protein Analysis

461

Amino Acids

51.88

Weight (kDa)

10.07

Isoelectric Point (pI)

57.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Efg1 PF10153 33 - 144 1.5e-30 rRNA-processing protein Efg1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 49, 301
Acc36I ACCTGC 1 cut(s) 1039
AccII CGCG 1 cut(s) 1056
AciI CCGC 7 cut(s) 25, 28, 39, 519, 1087, 1093, 1372
AclWI GGATC 2 cut(s) 945, 958
AcoI YGGCCR 1 cut(s) 752
AcsI RAATTY 3 cut(s) 139, 820, 1139
AcuI CTGAAG 1 cut(s) 171
AcyI GRCGYC 2 cut(s) 46, 298
AfaI GTAC 2 cut(s) 1305, 1358
AfiI CCNNNNNNNGG 1 cut(s) 48
AgeI ACCGGT 1 cut(s) 1206
AgsI TTSAA 7 cut(s) 190, 314, 373, 386, 892, 940, 963
AluBI AGCT 5 cut(s) 149, 515, 734, 990, 1150
AluI AGCT 5 cut(s) 149, 515, 734, 990, 1150
Alw21I GWGCWC 2 cut(s) 790, 992
Alw26I GTCTC 3 cut(s) 221, 427, 1160
Alw44I GTGCAC 1 cut(s) 786
AlwI GGATC 2 cut(s) 945, 958
AoxI GGCC 5 cut(s) 60, 68, 492, 752, 1028
ApaLI GTGCAC 1 cut(s) 786
ApeKI GCWGC 4 cut(s) 506, 509, 512, 1045
ApoI RAATTY 3 cut(s) 139, 820, 1139
ArsI GACNNNNNNTTYG 2 cut(s) 405, 437
AsiGI ACCGGT 1 cut(s) 1206
AspLEI GCGC 1 cut(s) 126
AspS9I GGNCC 4 cut(s) 51, 68, 803, 1095
AsuC2I CCSGG 1 cut(s) 751
AsuHPI GGTGA 3 cut(s) 43, 85, 452
AsuNHI GCTAGC 1 cut(s) 515
AvaII GGWCC 3 cut(s) 51, 803, 1095
BaeGI GKGCMC 1 cut(s) 790
BaeI ACNNNNGTAYC 2 cut(s) 438, 471
BamHI GGATCC 1 cut(s) 950
BanII GRGCYC 2 cut(s) 992, 1271
Bbv12I GWGCWC 2 cut(s) 790, 992
BbvI GCAGC 4 cut(s) 493, 521, 524, 1057
BccI CCATC 4 cut(s) 125, 763, 1111, 1337
BcgI CGANNNNNNTGC 2 cut(s) 1034, 1068
BcnI CCSGG 1 cut(s) 751
BcoDI GTCTC 3 cut(s) 221, 427, 1160
BfaI CTAG 4 cut(s) 516, 603, 729, 1319
BfmI CTRYAG 2 cut(s) 16, 507
BfuAI ACCTGC 1 cut(s) 1039
BglII AGATCT 1 cut(s) 379
BisI GCNGC 5 cut(s) 26, 507, 510, 513, 1046
BlsI GCNGC 5 cut(s) 27, 508, 511, 514, 1047
Bme1390I CCNGG 1 cut(s) 751
Bme18I GGWCC 3 cut(s) 51, 803, 1095
BmgT120I GGNCC 4 cut(s) 51, 68, 803, 1095
BmiI GGNNCC 2 cut(s) 69, 952
BmrFI CCNGG 1 cut(s) 751
BmsI GCATC 5 cut(s) 331, 607, 729, 991, 1080
BmtI GCTAGC 1 cut(s) 519
BoxI GACNNNNGTC 1 cut(s) 49
BplI GAGNNNNNCTC 2 cut(s) 1253, 1285
BpmI CTGGAG 2 cut(s) 323, 456
Bpu10I CCTNAGC 1 cut(s) 165
BpuEI CTTGAG 2 cut(s) 757, 1301
BpuMI CCSGG 1 cut(s) 751
BsaHI GRCGYC 2 cut(s) 46, 298
BsaJI CCNNGG 3 cut(s) 63, 749, 1338
BsaWI WCCGGW 1 cut(s) 1206
BsaXI ACNNNNNCTCC 2 cut(s) 589, 619
Bsc4I CCNNNNNNNGG 1 cut(s) 48
Bse118I RCCGGY 1 cut(s) 1206
Bse1I ACTGG 4 cut(s) 439, 663, 696, 1364
BseDI CCNNGG 3 cut(s) 63, 749, 1338
BseGI GGATG 4 cut(s) 755, 1071, 1095, 1348
BseLI CCNNNNNNNGG 1 cut(s) 48
BseMII CTCAG 2 cut(s) 179, 1165
BseNI ACTGG 4 cut(s) 439, 663, 696, 1364
BseRI GAGGAG 1 cut(s) 1039
BseSI GKGCMC 1 cut(s) 790
BseXI GCAGC 4 cut(s) 493, 521, 524, 1057
Bsh1236I CGCG 1 cut(s) 1056
BshFI GGCC 5 cut(s) 62, 70, 494, 754, 1030
BshTI ACCGGT 1 cut(s) 1206
BsiHKAI GWGCWC 2 cut(s) 790, 992
BsiSI CCGG 4 cut(s) 42, 71, 751, 1207
BslI CCNNNNNNNGG 1 cut(s) 48
BsmAI GTCTC 3 cut(s) 221, 427, 1160
BsmBI CGTCTC 1 cut(s) 221
BsnI GGCC 5 cut(s) 62, 70, 494, 754, 1030
Bsp1286I GDGCHC 3 cut(s) 790, 992, 1271
Bsp1407I TGTACA 1 cut(s) 1303
Bsp143I GATC 4 cut(s) 379, 950, 1230, 1315
BspACI CCGC 7 cut(s) 25, 28, 39, 519, 1087, 1093, 1372
BspANI GGCC 5 cut(s) 62, 70, 494, 754, 1030
BspCNI CTCAG 2 cut(s) 178, 1164
BspFNI CGCG 1 cut(s) 1056
BspLI GGNNCC 2 cut(s) 69, 952
BspMAI CTGCAG 1 cut(s) 511
BspMI ACCTGC 1 cut(s) 1039
BspOI GCTAGC 1 cut(s) 519
BspPI GGATC 2 cut(s) 945, 958
BsrFI RCCGGY 1 cut(s) 1206
BsrGI TGTACA 1 cut(s) 1303
BsrI ACTGG 4 cut(s) 439, 663, 696, 1364
BssAI RCCGGY 1 cut(s) 1206
BssECI CCNNGG 3 cut(s) 63, 749, 1338
BssMI GATC 4 cut(s) 379, 950, 1230, 1315
BssNI GRCGYC 2 cut(s) 46, 298
BssT1I CCWWGG 2 cut(s) 63, 1338
Bst4CI ACNGT 3 cut(s) 11, 792, 1303
BstACI GRCGYC 2 cut(s) 46, 298
BstAPI GCANNNNNTGC 1 cut(s) 341
BstAUI TGTACA 1 cut(s) 1303
BstC8I GCNNGC 5 cut(s) 23, 128, 517, 837, 1370
BstDEI CTNAG 2 cut(s) 165, 1151
BstEII GGTNACC 1 cut(s) 91
BstF5I GGATG 4 cut(s) 755, 1071, 1095, 1348
BstFNI CGCG 1 cut(s) 1056
BstHHI GCGC 1 cut(s) 126
BstKTI GATC 4 cut(s) 382, 953, 1233, 1318
BstMAI GTCTC 3 cut(s) 221, 427, 1160
BstMBI GATC 4 cut(s) 379, 950, 1230, 1315
BstMWI GCNNNNNNNGC 5 cut(s) 341, 512, 665, 768, 987
BstNSI RCATGY 2 cut(s) 130, 694
BstPAI GACNNNNGTC 1 cut(s) 49
BstPI GGTNACC 1 cut(s) 91
BstSCI CCNGG 1 cut(s) 749
BstSFI CTRYAG 2 cut(s) 16, 507
BstSLI GKGCMC 1 cut(s) 790
BstUI CGCG 1 cut(s) 1056
BstV1I GCAGC 4 cut(s) 493, 521, 524, 1057
BstX2I RGATCY 2 cut(s) 379, 950
BstYI RGATCY 2 cut(s) 379, 950
BsuRI GGCC 5 cut(s) 62, 70, 494, 754, 1030
BtsCI GGATG 4 cut(s) 755, 1071, 1095, 1348
BtsIMutI CAGTG 2 cut(s) 670, 703
BveI ACCTGC 1 cut(s) 1039
Cac8I GCNNGC 5 cut(s) 23, 128, 517, 837, 1370
CfoI GCGC 1 cut(s) 126
Cfr10I RCCGGY 1 cut(s) 1206
Cfr13I GGNCC 4 cut(s) 51, 68, 803, 1095
Csp6I GTAC 2 cut(s) 1304, 1357
CspAI ACCGGT 1 cut(s) 1206
CviAII CATG 3 cut(s) 127, 691, 1246
CviQI GTAC 2 cut(s) 1304, 1357
DdeI CTNAG 2 cut(s) 165, 1151
DpnI GATC 4 cut(s) 381, 952, 1232, 1317
DpnII GATC 4 cut(s) 379, 950, 1230, 1315
EaeI YGGCCR 1 cut(s) 752
Ecl136II GAGCTC 1 cut(s) 990
Eco130I CCWWGG 2 cut(s) 63, 1338
Eco24I GRGCYC 2 cut(s) 992, 1271
Eco47I GGWCC 3 cut(s) 51, 803, 1095
Eco53kI GAGCTC 1 cut(s) 990
Eco57I CTGAAG 1 cut(s) 171
Eco91I GGTNACC 1 cut(s) 91
EcoICRI GAGCTC 1 cut(s) 990
EcoO65I GGTNACC 1 cut(s) 91
EcoT14I CCWWGG 2 cut(s) 63, 1338
EcoT38I GRGCYC 2 cut(s) 992, 1271
ErhI CCWWGG 2 cut(s) 63, 1338
Esp3I CGTCTC 1 cut(s) 221
FaeI CATG 3 cut(s) 130, 694, 1249
FalI AAGNNNNNCTT 8 cut(s) 47, 79, 366, 398, 868, 900, 916, 948
FatI CATG 3 cut(s) 126, 690, 1245
FauI CCCGC 2 cut(s) 21, 46
Fnu4HI GCNGC 5 cut(s) 26, 507, 510, 513, 1046
FokI GGATG 4 cut(s) 742, 1078, 1102, 1355
FriOI GRGCYC 2 cut(s) 992, 1271
Fsp4HI GCNGC 5 cut(s) 26, 507, 510, 513, 1046
FspBI CTAG 4 cut(s) 516, 603, 729, 1319
GlaI GCGC 1 cut(s) 125
GluI GCNGC 5 cut(s) 26, 507, 510, 513, 1046
GsuI CTGGAG 2 cut(s) 323, 456
HaeIII GGCC 5 cut(s) 62, 70, 494, 754, 1030
HapII CCGG 4 cut(s) 42, 71, 751, 1207
HhaI GCGC 1 cut(s) 126
Hin1I GRCGYC 2 cut(s) 46, 298
Hin1II CATG 3 cut(s) 130, 694, 1249
Hin6I GCGC 1 cut(s) 124
HinP1I GCGC 1 cut(s) 124
HinfI GANTC 2 cut(s) 205, 1326
HpaII CCGG 4 cut(s) 42, 71, 751, 1207
HphI GGTGA 3 cut(s) 43, 85, 452
Hpy166II GTNNAC 3 cut(s) 34, 432, 788
Hpy188I TCNGA 2 cut(s) 1000, 1261
Hpy188III TCNNGA 9 cut(s) 167, 190, 302, 383, 563, 672, 1157, 1280, 1313
Hpy8I GTNNAC 3 cut(s) 34, 432, 788
Hpy99I CGWCG 2 cut(s) 51, 557
HpyAV CCTTC 4 cut(s) 176, 816, 898, 946
HpyCH4III ACNGT 3 cut(s) 11, 792, 1303
HpyCH4IV ACGT 3 cut(s) 46, 298, 316
HpyCH4V TGCA 7 cut(s) 344, 358, 509, 620, 647, 788, 1298
HpyF10VI GCNNNNNNNGC 5 cut(s) 341, 512, 665, 768, 987
HpyF3I CTNAG 2 cut(s) 165, 1151
HpySE526I ACGT 3 cut(s) 46, 298, 316
Hsp92I GRCGYC 2 cut(s) 46, 298
Hsp92II CATG 3 cut(s) 130, 694, 1249
HspAI GCGC 1 cut(s) 124
Kzo9I GATC 4 cut(s) 379, 950, 1230, 1315
LmnI GCTCC 3 cut(s) 119, 135, 995
Lsp1109I GCAGC 4 cut(s) 493, 521, 524, 1057
LweI GCATC 5 cut(s) 331, 607, 729, 991, 1080
MaeI CTAG 4 cut(s) 516, 603, 729, 1319
MaeII ACGT 3 cut(s) 46, 298, 316
MaeIII GTNAC 4 cut(s) 91, 245, 1057, 1225
MalI GATC 4 cut(s) 381, 952, 1232, 1317
MboI GATC 4 cut(s) 379, 950, 1230, 1315
MflI RGATCY 2 cut(s) 379, 950
MhlI GDGCHC 3 cut(s) 790, 992, 1271
MluCI AATT 7 cut(s) 139, 368, 763, 820, 958, 982, 1139
MmeI TCCRAC 3 cut(s) 159, 1017, 1180
MseI TTAA 3 cut(s) 293, 489, 1107
MspA1I CMGCKG 1 cut(s) 149
MspI CCGG 4 cut(s) 42, 71, 751, 1207
MspR9I CCNGG 1 cut(s) 751
MvnI CGCG 1 cut(s) 1056
MwoI GCNNNNNNNGC 5 cut(s) 341, 512, 665, 768, 987
NciI CCSGG 1 cut(s) 751
NdeII GATC 4 cut(s) 379, 950, 1230, 1315
NheI GCTAGC 1 cut(s) 515
NlaIII CATG 3 cut(s) 130, 694, 1249
NlaIV GGNNCC 2 cut(s) 69, 952
NmuCI GTSAC 2 cut(s) 91, 245
NspI RCATGY 2 cut(s) 130, 694
PaeI GCATGC 1 cut(s) 130
PfeI GAWTC 2 cut(s) 205, 1326
PinAI ACCGGT 1 cut(s) 1206
PkrI GCNGC 5 cut(s) 27, 508, 511, 514, 1047
PshAI GACNNNNGTC 1 cut(s) 49
Psp124BI GAGCTC 1 cut(s) 992
PspEI GGTNACC 1 cut(s) 91
PspN4I GGNNCC 2 cut(s) 69, 952
PspPI GGNCC 4 cut(s) 51, 68, 803, 1095
PstI CTGCAG 1 cut(s) 511
PsuI RGATCY 2 cut(s) 379, 950
PvuII CAGCTG 1 cut(s) 149
RsaI GTAC 2 cut(s) 1305, 1358
RsaNI GTAC 2 cut(s) 1304, 1357
SacI GAGCTC 1 cut(s) 992
SaqAI TTAA 3 cut(s) 293, 489, 1107
SatI GCNGC 5 cut(s) 26, 507, 510, 513, 1046
Sau3AI GATC 4 cut(s) 379, 950, 1230, 1315
Sau96I GGNCC 4 cut(s) 51, 68, 803, 1095
ScrFI CCNGG 1 cut(s) 751
SduI GDGCHC 3 cut(s) 790, 992, 1271
SfaNI GCATC 5 cut(s) 331, 607, 729, 991, 1080
SfcI CTRYAG 2 cut(s) 16, 507
SinI GGWCC 3 cut(s) 51, 803, 1095
SmlI CTYRAG 2 cut(s) 772, 1280
SmoI CTYRAG 2 cut(s) 772, 1280
SphI GCATGC 1 cut(s) 130
Sse9I AATT 7 cut(s) 139, 368, 763, 820, 958, 982, 1139
SsiI CCGC 7 cut(s) 25, 28, 39, 519, 1087, 1093, 1372
SspI AATATT 1 cut(s) 237
SspMI CTAG 4 cut(s) 516, 603, 729, 1319
SstI GAGCTC 1 cut(s) 992
StyD4I CCNGG 1 cut(s) 749
StyI CCWWGG 2 cut(s) 63, 1338
TaaI ACNGT 3 cut(s) 11, 792, 1303
TaiI ACGT 3 cut(s) 49, 301, 319
TaqI TCGA 5 cut(s) 120, 812, 854, 1158, 1271
TaqII GACCGA 4 cut(s) 39, 79, 425, 1179
TasI AATT 7 cut(s) 139, 368, 763, 820, 958, 982, 1139
TatI WGTACW 2 cut(s) 1303, 1356
TauI GCSGC 1 cut(s) 28
TfiI GAWTC 2 cut(s) 205, 1326
Tru1I TTAA 3 cut(s) 293, 489, 1107
Tru9I TTAA 3 cut(s) 293, 489, 1107
TscAI CASTG 2 cut(s) 670, 703
TseFI GTSAC 2 cut(s) 91, 245
TseI GCWGC 4 cut(s) 506, 509, 512, 1045
Tsp45I GTSAC 2 cut(s) 91, 245
TspDTI ATGAA 5 cut(s) 197, 624, 642, 798, 1179
TspGWI ACGGA 1 cut(s) 122
TspRI CASTG 2 cut(s) 670, 703
VneI GTGCAC 1 cut(s) 786
VpaK11BI GGWCC 3 cut(s) 51, 803, 1095
XapI RAATTY 3 cut(s) 139, 820, 1139
XceI RCATGY 2 cut(s) 130, 694
XcmI CCANNNNNNNNNTGG 1 cut(s) 61
XspI CTAG 4 cut(s) 516, 603, 729, 1319
ZraI GACGTC 2 cut(s) 47, 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.