Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0005214

Physical Location & Seq

Genomic Coordinates Forward (+)

26271856 .. 26274385

Gene Structure 2530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGCCAACAAAGAAAGGAATGAAGCTTCACACCAATTTGGCTTTCAACGAAACCGAAAGACTACAAATTCTTCTCTTTCCTTCTTTCTTTCTTTCTCTCTTCTGGCCTTTCCGGGTCTCCTCCTCCATGCAACAACCCATGGCTTCAACGACGGTGTCGATCATGAAGGTGGTGGCGGCCACTCCGATAACCTCGTTCTCCAGCTTCGCACTGCTATTCCTGCTCTTGATTTCAACCAAAATCACAAACACCTTCGCTCTCAACAGTGCCTTTCTGAGCGTCAAGTACAAATACGCCGGCCGCGAACCTTCCTTGAGCGCCCTTAAAGCTCACGATATCCAGCGGACTCTTCGATTTCTTGCCGGCGTTGACCTCCCTTTAGGCGGCTCTGGCCGGCCTGATGTCGTCGGCTTATACTATGCTAAAATTGGCATTGGAACACCTACCAAGGACTACTATGTACAAGTTGATACAGGAAGTGACATTATGTGGGTCAACTGTATACAATGCAGAGATTGTCCACAGAGAAGCACACTTGGTATTGATCTTACTCTATATGATGTTAAGCAGTCCTCCACTGGTAAATTAGTTCCTTGTAATCAAGATTTTTGCTTGGAGGTAAATGACGGTCTGCTGTCTGGATGTACGGCTAATATGACATGTCCATACCTGCAAATATACGGAGATGGAACCTCAACTGCCGGTTACTTTGTCAAGGATATTGTGTTTTATGATGGAGTGTCTGGTGACCTCAAGACTAGTCTGCCAATGGGAGCGTCATTTTTGGGTGTGGTGCTACGCAATCTGGTGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

272

Amino Acids

29.68

Weight (kDa)

8.61

Isoelectric Point (pI)

30.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	139 - 245	1.6e-20	Xylanase inhibitor N-terminal
Asp	PF00026	139 - 216	2.4e-09	Eukaryotic aspartyl protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005214)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05840
fragaria_vesca	FvH4_4g12250 FvH4_4g12250 FvH4_4g12250
malus_domestica	MD04G1028200.v1.1
prunus_persica	Prupe.1G177600_v2.0.a1 Prupe.1G177600_v2.0.a1 Prupe.1G177600_v2.0.a1
pyrus_communis	pycom04g02480 pycom13g29440 pycom13g29450
rosa_chinensis	RchiOBHm_Chr4g0410011 RchiOBHm_Chr4g0410051
rosa_laevigata	RLG00000008506
rosa_multiflora	Rmu_sc0000023.1_g000006 Rmu_sc0019088.1_g000003 Rmu_sc0026249.1_g000001 Rmu_ssc0000186.1_g000008
rosa_roxburghii	Rroxscaffold_5G00354520 Rroxscaffold_5G00354580
rosa_rugosa	Rorug04G0100700 Rorug04G0100800
rosa_samantha	Rh4AG159000 Rh4BG158300 Rh4BG172300 Rh4CG170300 Rh4DG154100 Rh6BG295000
rosa_wichuraiana	Rw4G013170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	678
AccI	GTMKAC	1 cut(s)	502
AccII	CGCG	1 cut(s)	303
AciI	CCGC	4 cut(s)	176, 301, 343, 384
AcoI	YGGCCR	3 cut(s)	177, 298, 391
AcsI	RAATTY	1 cut(s)	66
AfaI	GTAC	3 cut(s)	287, 462, 646
AfiI	CCNNNNNNNGG	1 cut(s)	383
AflIII	ACRYGT	1 cut(s)	659
AgsI	TTSAA	3 cut(s)	46, 147, 234
AhlI	ACTAGT	1 cut(s)	758
AjuI	GAANNNNNNNTTGG	2 cut(s)	26, 58
AluBI	AGCT	3 cut(s)	25, 204, 329
AluI	AGCT	3 cut(s)	25, 204, 329
Alw26I	GTCTC	1 cut(s)	121
AoxI	GGCC	5 cut(s)	104, 177, 298, 391, 395
ApoI	RAATTY	1 cut(s)	66
AspLEI	GCGC	1 cut(s)	320
AsuC2I	CCSGG	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	758
BccI	CCATC	2 cut(s)	680, 728
BceAI	ACGGC	1 cut(s)	663
BcnI	CCSGG	1 cut(s)	113
BcoDI	GTCTC	1 cut(s)	121
BcuI	ACTAGT	1 cut(s)	758
BfaI	CTAG	2 cut(s)	759, 814
BfoI	RGCGCY	1 cut(s)	321
BfuAI	ACCTGC	1 cut(s)	678
BisI	GCNGC	3 cut(s)	177, 301, 385
BlsI	GCNGC	3 cut(s)	178, 302, 386
Bme1390I	CCNGG	1 cut(s)	113
BmiI	GGNNCC	1 cut(s)	691
BmrFI	CCNGG	1 cut(s)	113
BpmI	CTGGAG	1 cut(s)	184
BpuEI	CTTGAG	2 cut(s)	334, 737
BpuMI	CCSGG	1 cut(s)	113
BsaI	GGTCTC	1 cut(s)	121
BsaJI	CCNNGG	2 cut(s)	138, 447
Bsc4I	CCNNNNNNNGG	1 cut(s)	383
Bse118I	RCCGGY	4 cut(s)	296, 362, 393, 701
Bse1I	ACTGG	1 cut(s)	583
BseDI	CCNNGG	2 cut(s)	138, 447
BseGI	GGATG	1 cut(s)	647
BseLI	CCNNNNNNNGG	1 cut(s)	383
BseMII	CTCAG	1 cut(s)	266
BseNI	ACTGG	1 cut(s)	583
BseRI	GAGGAG	2 cut(s)	109, 112
BseX3I	CGGCCG	1 cut(s)	298
Bsh1236I	CGCG	1 cut(s)	303
Bsh1285I	CGRYCG	1 cut(s)	301
BshFI	GGCC	5 cut(s)	106, 179, 300, 393, 397
BsiEI	CGRYCG	1 cut(s)	301
BsiSI	CCGG	5 cut(s)	112, 297, 363, 394, 702
BslI	CCNNNNNNNGG	1 cut(s)	383
BsmAI	GTCTC	1 cut(s)	121
BsnI	GGCC	5 cut(s)	106, 179, 300, 393, 397
Bso31I	GGTCTC	1 cut(s)	121
Bsp1407I	TGTACA	1 cut(s)	460
Bsp143I	GATC	3 cut(s)	159, 544, 810
Bsp19I	CCATGG	1 cut(s)	138
BspACI	CCGC	4 cut(s)	176, 301, 343, 384
BspANI	GGCC	5 cut(s)	106, 179, 300, 393, 397
BspCNI	CTCAG	1 cut(s)	267
BspFNI	CGCG	1 cut(s)	303
BspHI	TCATGA	1 cut(s)	162
BspLI	GGNNCC	1 cut(s)	691
BspMI	ACCTGC	1 cut(s)	678
BspTNI	GGTCTC	1 cut(s)	121
BsrFI	RCCGGY	4 cut(s)	296, 362, 393, 701
BsrGI	TGTACA	1 cut(s)	460
BsrI	ACTGG	1 cut(s)	583
BssAI	RCCGGY	4 cut(s)	296, 362, 393, 701
BssECI	CCNNGG	2 cut(s)	138, 447
BssMI	GATC	3 cut(s)	159, 544, 810
BssNAI	GTATAC	1 cut(s)	503
BssT1I	CCWWGG	2 cut(s)	138, 447
Bst1107I	GTATAC	1 cut(s)	503
Bst4CI	ACNGT	4 cut(s)	154, 266, 500, 629
Bst6I	CTCTTC	2 cut(s)	104, 354
BstAUI	TGTACA	1 cut(s)	460
BstC8I	GCNNGC	3 cut(s)	298, 364, 395
BstDEI	CTNAG	1 cut(s)	275
BstDSI	CCRYGG	1 cut(s)	138
BstEII	GGTNACC	1 cut(s)	746
BstF5I	GGATG	1 cut(s)	647
BstFNI	CGCG	1 cut(s)	303
BstH2I	RGCGCY	1 cut(s)	321
BstHHI	GCGC	1 cut(s)	320
BstKTI	GATC	3 cut(s)	162, 547, 813
BstMAI	GTCTC	1 cut(s)	121
BstMBI	GATC	3 cut(s)	159, 544, 810
BstMCI	CGRYCG	1 cut(s)	301
BstMWI	GCNNNNNNNGC	3 cut(s)	220, 326, 390
BstNSI	RCATGY	1 cut(s)	663
BstPI	GGTNACC	1 cut(s)	746
BstSCI	CCNGG	1 cut(s)	111
BstUI	CGCG	1 cut(s)	303
BstZ17I	GTATAC	1 cut(s)	503
BstZI	CGGCCG	1 cut(s)	298
BsuRI	GGCC	5 cut(s)	106, 179, 300, 393, 397
BtgI	CCRYGG	1 cut(s)	138
BtsCI	GGATG	1 cut(s)	647
BtsI	GCAGTG	1 cut(s)	209
BtsIMutI	CAGTG	3 cut(s)	209, 271, 576
BveI	ACCTGC	1 cut(s)	678
Cac8I	GCNNGC	3 cut(s)	298, 364, 395
CciI	TCATGA	1 cut(s)	162
CfoI	GCGC	1 cut(s)	320
Cfr10I	RCCGGY	4 cut(s)	296, 362, 393, 701
CseI	GACGC	2 cut(s)	268, 765
Csp6I	GTAC	3 cut(s)	286, 461, 645
CviAII	CATG	4 cut(s)	127, 139, 163, 660
CviQI	GTAC	3 cut(s)	286, 461, 645
DdeI	CTNAG	1 cut(s)	275
DpnI	GATC	3 cut(s)	161, 546, 812
DpnII	GATC	3 cut(s)	159, 544, 810
EaeI	YGGCCR	3 cut(s)	177, 298, 391
EagI	CGGCCG	1 cut(s)	298
Eam1104I	CTCTTC	2 cut(s)	104, 354
EarI	CTCTTC	2 cut(s)	104, 354
EclXI	CGGCCG	1 cut(s)	298
Eco130I	CCWWGG	2 cut(s)	138, 447
Eco31I	GGTCTC	1 cut(s)	121
Eco32I	GATATC	1 cut(s)	337
Eco52I	CGGCCG	1 cut(s)	298
Eco91I	GGTNACC	1 cut(s)	746
EcoO65I	GGTNACC	1 cut(s)	746
EcoRV	GATATC	1 cut(s)	337
EcoT14I	CCWWGG	2 cut(s)	138, 447
ErhI	CCWWGG	2 cut(s)	138, 447
FaeI	CATG	4 cut(s)	130, 142, 166, 663
FatI	CATG	4 cut(s)	126, 138, 162, 659
FblI	GTMKAC	1 cut(s)	502
Fnu4HI	GCNGC	3 cut(s)	177, 301, 385
FokI	GGATG	1 cut(s)	654
FseI	GGCCGGCC	1 cut(s)	397
Fsp4HI	GCNGC	3 cut(s)	177, 301, 385
FspBI	CTAG	2 cut(s)	759, 814
GlaI	GCGC	1 cut(s)	319
GluI	GCNGC	3 cut(s)	177, 301, 385
GsuI	CTGGAG	1 cut(s)	184
HaeII	RGCGCY	1 cut(s)	321
HaeIII	GGCC	5 cut(s)	106, 179, 300, 393, 397
HapII	CCGG	5 cut(s)	112, 297, 363, 394, 702
HgaI	GACGC	2 cut(s)	268, 765
HhaI	GCGC	1 cut(s)	320
Hin1II	CATG	4 cut(s)	130, 142, 166, 663
Hin6I	GCGC	1 cut(s)	318
HinP1I	GCGC	1 cut(s)	318
HincII	GTYRAC	2 cut(s)	370, 496
HindII	GTYRAC	2 cut(s)	370, 496
HindIII	AAGCTT	1 cut(s)	23
HinfI	GANTC	1 cut(s)	346
HpaII	CCGG	5 cut(s)	112, 297, 363, 394, 702
HphI	GGTGA	1 cut(s)	758
Hpy166II	GTNNAC	4 cut(s)	370, 496, 503, 521
Hpy188I	TCNGA	2 cut(s)	186, 276
Hpy188III	TCNNGA	6 cut(s)	163, 226, 332, 602, 639, 754
Hpy8I	GTNNAC	4 cut(s)	370, 496, 503, 521
Hpy99I	CGWCG	2 cut(s)	154, 410
HpyAV	CCTTC	4 cut(s)	90, 160, 262, 318
HpyCH4III	ACNGT	4 cut(s)	154, 266, 500, 629
HpyCH4V	TGCA	3 cut(s)	130, 510, 673
HpyF10VI	GCNNNNNNNGC	3 cut(s)	220, 326, 390
HpyF3I	CTNAG	1 cut(s)	275
Hsp92II	CATG	4 cut(s)	130, 142, 166, 663
HspAI	GCGC	1 cut(s)	318
KroI	GCCGGC	3 cut(s)	296, 362, 393
KroNI	GCCGGC	3 cut(s)	298, 364, 395
Kzo9I	GATC	3 cut(s)	159, 544, 810
LmnI	GCTCC	1 cut(s)	773
MaeI	CTAG	2 cut(s)	759, 814
MaeIII	GTNAC	3 cut(s)	479, 704, 746
MalI	GATC	3 cut(s)	161, 546, 812
MboI	GATC	3 cut(s)	159, 544, 810
MboII	GAAGA	3 cut(s)	62, 91, 341
MluCI	AATT	4 cut(s)	34, 66, 426, 584
MlyI	GAGTC	1 cut(s)	340
MnlI	CCTC	8 cut(s)	130, 133, 202, 383, 583, 610, 703, 761
MroNI	GCCGGC	3 cut(s)	296, 362, 393
MseI	TTAA	2 cut(s)	324, 564
MslI	CAYNNNNRTG	1 cut(s)	167
MspA1I	CMGCKG	1 cut(s)	343
MspI	CCGG	5 cut(s)	112, 297, 363, 394, 702
MspR9I	CCNGG	1 cut(s)	113
MvnI	CGCG	1 cut(s)	303
MwoI	GCNNNNNNNGC	3 cut(s)	220, 326, 390
NaeI	GCCGGC	3 cut(s)	298, 364, 395
NciI	CCSGG	1 cut(s)	113
NcoI	CCATGG	1 cut(s)	138
NdeII	GATC	3 cut(s)	159, 544, 810
NgoMIV	GCCGGC	3 cut(s)	296, 362, 393
NlaIII	CATG	4 cut(s)	130, 142, 166, 663
NlaIV	GGNNCC	1 cut(s)	691
NmuCI	GTSAC	2 cut(s)	479, 746
NspI	RCATGY	1 cut(s)	663
PagI	TCATGA	1 cut(s)	162
PciI	ACATGT	1 cut(s)	659
PcsI	WCGNNNNNNNCGW	2 cut(s)	155, 300
PdiI	GCCGGC	3 cut(s)	298, 364, 395
PflFI	GACNNNGTC	1 cut(s)	154
PkrI	GCNGC	3 cut(s)	178, 302, 386
PleI	GAGTC	1 cut(s)	340
PpsI	GAGTC	1 cut(s)	340
PscI	ACATGT	1 cut(s)	659
PspEI	GGTNACC	1 cut(s)	746
PspN4I	GGNNCC	1 cut(s)	691
PsyI	GACNNNGTC	1 cut(s)	154
RigI	GGCCGGCC	1 cut(s)	397
RsaI	GTAC	3 cut(s)	287, 462, 646
RsaNI	GTAC	3 cut(s)	286, 461, 645
RseI	CAYNNNNRTG	1 cut(s)	167
SaqAI	TTAA	2 cut(s)	324, 564
SatI	GCNGC	3 cut(s)	177, 301, 385
Sau3AI	GATC	3 cut(s)	159, 544, 810
SchI	GAGTC	1 cut(s)	340
ScrFI	CCNGG	1 cut(s)	113
SmiMI	CAYNNNNRTG	1 cut(s)	167
SmlI	CTYRAG	2 cut(s)	313, 752
SmoI	CTYRAG	2 cut(s)	313, 752
SpeI	ACTAGT	1 cut(s)	758
Sse9I	AATT	4 cut(s)	34, 66, 426, 584
SsiI	CCGC	4 cut(s)	176, 301, 343, 384
SspMI	CTAG	2 cut(s)	759, 814
StyD4I	CCNGG	1 cut(s)	111
StyI	CCWWGG	2 cut(s)	138, 447
TaaI	ACNGT	4 cut(s)	154, 266, 500, 629
TaqI	TCGA	2 cut(s)	158, 352
TasI	AATT	4 cut(s)	34, 66, 426, 584
TatI	WGTACW	2 cut(s)	285, 460
TauI	GCSGC	3 cut(s)	179, 303, 387
Tru1I	TTAA	2 cut(s)	324, 564
Tru9I	TTAA	2 cut(s)	324, 564
TscAI	CASTG	3 cut(s)	216, 271, 583
TseFI	GTSAC	2 cut(s)	479, 746
Tsp45I	GTSAC	2 cut(s)	479, 746
TspDTI	ATGAA	2 cut(s)	35, 179
TspGWI	ACGGA	1 cut(s)	696
TspRI	CASTG	3 cut(s)	216, 271, 583
Tth111I	GACNNNGTC	1 cut(s)	154
XapI	RAATTY	1 cut(s)	66
XceI	RCATGY	1 cut(s)	663
XmiI	GTMKAC	1 cut(s)	502
XspI	CTAG	2 cut(s)	759, 814

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.