pycom14g01010
MYB Family

Myb-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0009968
Physical Location & Seq
Reverse (-)
717689 .. 719288
1600 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1080 bp
ATGCATGCAAAGTACTATTTGAAATGTTTAGGTCTGTATTTTAGGTCCTTGGGAGAGGCCAGAGATCTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGGTAAGGCCTCCTTGCTGTGAGAAGGTTGGAATCAAGAAAGGTCCATGGACTCCAGAGGAGGACATCATCCTTGTTTCTTACATCCAAGAGCATGGTCCTGGAAATTGGAGATCAGTTCCCACCAACACTGGGTTGATGAGGTGCAGCAAAAGTTGCAGACTCAGATGGACTAATTACCTCAGACCGGGAATCAAGCGCGGTAACTTCACACCTCATGAAGAAGGGATGATCATTCACTTGCAAGCTTTATTGGGTAACAAATGGGCAGCAATAGCTTCCTATCTGCCACAGAGAACCGATAACGACATAAAGAACTACTGGAACACTCACTTGAAGAAGAAGCTGAAGAACTTTCAATCAGCTCTTGATCCTCACACAACGTCAGATGATCCGTTTAACGTAAATGTATCAAGGATGAGTTTGAGTGATGGGAGCTTAGATAATATGACAAGCCATGCCTCCTCAATTGTTCTGAGGAACAACCAATCCTCCTCCACATACGCCTCAAGCACTGAGAACATTTCGCGGCTCCTAGAAGGTTGGATGAGATCCTCCCCAACTCCAAGGACCTCCAGCCTCAAACACCATGCTGCAAGTGGCGATGATCAAGGAAAACCTAGCGGTATTAGCACAGGAAATCTAGCATCTAACGAGGAGTTTGAATCGATTCTGTCGTATGAGAACTTGAACAATTTTGCTTCGTGGGACAGGTCTACTTGTGATTCATCTACTTATTCTAACAACAAGGCGTCACAACTTAGTATTAAAGTTCCAAACAATGGAGAAATAATTCATGATCGCCATCTTCTGCGCGACGAGGATCAGAAGTGTAAGCAAATTCTTCGATGTGAAAGCAGTAGTACTAACTGTAACAATCCTCCATTGACGTTTCTTGAGAAGTGGCTGTTGGATGAAAGTGCTGGACATGTAGAAGATGATCAGATGATGGAATTGTCTCCAATGTCCTTGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

360

Amino Acids

40.8

Weight (kDa)

6.87

Isoelectric Point (pI)

46.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 48 - 95 1.8e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 51 - 109 4.4e-10 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 101 - 146 1e-13 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 104 - 152 6.5e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 884
AccI GTMKAC 1 cut(s) 818
AccII CGCG 3 cut(s) 303, 631, 918
AciI CCGC 3 cut(s) 303, 631, 726
AclWI GGATC 4 cut(s) 467, 488, 648, 933
AcsI RAATTY 1 cut(s) 942
AcuI CTGAAG 1 cut(s) 470
AcyI GRCGYC 1 cut(s) 854
AfaI GTAC 2 cut(s) 14, 967
AfiI CCNNNNNNNGG 3 cut(s) 234, 289, 884
AflIII ACRYGT 1 cut(s) 1030
AgsI TTSAA 5 cut(s) 22, 439, 461, 767, 793
AjnI CCWGG 1 cut(s) 202
AjuI GAANNNNNNNTTGG 2 cut(s) 995, 1027
AloI GAACNNNNNNTCC 2 cut(s) 575, 607
AluBI AGCT 5 cut(s) 350, 380, 448, 467, 540
AluI AGCT 5 cut(s) 350, 380, 448, 467, 540
Alw26I GTCTC 1 cut(s) 1065
AlwI GGATC 4 cut(s) 467, 488, 648, 933
AoxI GGCC 2 cut(s) 57, 110
ApeKI GCWGC 3 cut(s) 249, 371, 695
ApoI RAATTY 1 cut(s) 942
Asp700I GAANNNNTTC 2 cut(s) 771, 894
AspLEI GCGC 2 cut(s) 303, 918
AspS9I GGNCC 4 cut(s) 45, 146, 200, 672
AsuC2I CCSGG 1 cut(s) 291
AvaII GGWCC 4 cut(s) 45, 146, 200, 672
BbvI GCAGC 3 cut(s) 261, 383, 682
BccI CCATC 5 cut(s) 97, 264, 527, 915, 1045
BcgI CGANNNNNNTGC 2 cut(s) 929, 963
BciT130I CCWGG 1 cut(s) 204
BclI TGATCA 3 cut(s) 333, 709, 1042
BcnI CCSGG 1 cut(s) 291
BcoDI GTCTC 1 cut(s) 1065
BfaI CTAG 4 cut(s) 68, 638, 723, 746
BglII AGATCT 1 cut(s) 64
BisI GCNGC 4 cut(s) 250, 372, 632, 696
BlsI GCNGC 4 cut(s) 251, 373, 633, 697
BmcAI AGTACT 2 cut(s) 14, 967
Bme1390I CCNGG 2 cut(s) 204, 291
Bme18I GGWCC 4 cut(s) 45, 146, 200, 672
BmgT120I GGNCC 4 cut(s) 45, 146, 200, 672
BmiI GGNNCC 1 cut(s) 635
BmrFI CCNGG 2 cut(s) 204, 291
BmrI ACTGGG 1 cut(s) 243
BmsI GCATC 1 cut(s) 758
BmuI ACTGGG 1 cut(s) 243
BpmI CTGGAG 2 cut(s) 141, 661
BpuEI CTTGAG 2 cut(s) 595, 1019
BpuMI CCSGG 1 cut(s) 291
Bsa29I ATCGAT 1 cut(s) 770
BsaBI GATNNNNATC 1 cut(s) 906
BsaHI GRCGYC 1 cut(s) 854
BsaJI CCNNGG 4 cut(s) 48, 149, 668, 1071
BsaXI ACNNNNNCTCC 2 cut(s) 578, 608
Bsc4I CCNNNNNNNGG 3 cut(s) 234, 289, 884
Bse1I ACTGG 2 cut(s) 238, 428
Bse8I GATNNNNATC 1 cut(s) 906
BseBI CCWGG 1 cut(s) 204
BseCI ATCGAT 1 cut(s) 770
BseDI CCNNGG 4 cut(s) 48, 149, 668, 1071
BseGI GGATG 6 cut(s) 171, 186, 336, 525, 654, 1021
BseJI GATNNNNATC 1 cut(s) 906
BseLI CCNNNNNNNGG 3 cut(s) 234, 289, 884
BseMII CTCAG 4 cut(s) 280, 298, 569, 609
BseNI ACTGG 2 cut(s) 238, 428
BseRI GAGGAG 4 cut(s) 176, 556, 586, 773
BseXI GCAGC 3 cut(s) 261, 383, 682
BsgI GTGCAG 1 cut(s) 268
Bsh1236I CGCG 3 cut(s) 303, 631, 918
BshFI GGCC 2 cut(s) 59, 112
BshVI ATCGAT 1 cut(s) 770
BsiSI CCGG 1 cut(s) 290
BslFI GGGAC 1 cut(s) 824
BslI CCNNNNNNNGG 3 cut(s) 234, 289, 884
BsmAI GTCTC 1 cut(s) 1065
BsmFI GGGAC 1 cut(s) 824
BsnI GGCC 2 cut(s) 59, 112
Bsp19I CCATGG 1 cut(s) 149
BspACI CCGC 3 cut(s) 303, 631, 726
BspANI GGCC 2 cut(s) 59, 112
BspCNI CTCAG 4 cut(s) 279, 297, 570, 610
BspDI ATCGAT 1 cut(s) 770
BspFNI CGCG 3 cut(s) 303, 631, 918
BspHI TCATGA 2 cut(s) 319, 898
BspLI GGNNCC 1 cut(s) 635
BspPI GGATC 4 cut(s) 467, 488, 648, 933
BsrI ACTGG 2 cut(s) 238, 428
BssECI CCNNGG 4 cut(s) 48, 149, 668, 1071
BssNI GRCGYC 1 cut(s) 854
BssT1I CCWWGG 4 cut(s) 48, 149, 668, 1071
Bst2UI CCWGG 1 cut(s) 204
Bst4CI ACNGT 1 cut(s) 974
BstACI GRCGYC 1 cut(s) 854
BstAPI GCANNNNNTGC 1 cut(s) 258
BstC8I GCNNGC 2 cut(s) 6, 348
BstDEI CTNAG 6 cut(s) 266, 284, 541, 578, 618, 863
BstDSI CCRYGG 1 cut(s) 149
BstF5I GGATG 6 cut(s) 171, 186, 336, 525, 654, 1021
BstFNI CGCG 3 cut(s) 303, 631, 918
BstHHI GCGC 2 cut(s) 303, 918
BstMAI GTCTC 1 cut(s) 1065
BstMWI GCNNNNNNNGC 3 cut(s) 258, 377, 732
BstNI CCWGG 1 cut(s) 204
BstNSI RCATGY 2 cut(s) 8, 1034
BstSCI CCNGG 2 cut(s) 202, 289
BstUI CGCG 3 cut(s) 303, 631, 918
BstV1I GCAGC 3 cut(s) 261, 383, 682
BstX2I RGATCY 2 cut(s) 64, 653
BstXI CCANNNNNNTGG 1 cut(s) 197
BstYI RGATCY 2 cut(s) 64, 653
Bsu15I ATCGAT 1 cut(s) 770
BsuRI GGCC 2 cut(s) 59, 112
BsuTUI ATCGAT 1 cut(s) 770
BtgI CCRYGG 1 cut(s) 149
BtgZI GCGATG 1 cut(s) 720
BtsCI GGATG 6 cut(s) 171, 186, 336, 525, 654, 1021
BtsIMutI CAGTG 2 cut(s) 231, 615
Cac8I GCNNGC 2 cut(s) 6, 348
CciI TCATGA 2 cut(s) 319, 898
CfoI GCGC 2 cut(s) 303, 918
Cfr13I GGNCC 4 cut(s) 45, 146, 200, 672
ClaI ATCGAT 1 cut(s) 770
CseI GACGC 1 cut(s) 843
Csp6I GTAC 2 cut(s) 13, 966
CviAII CATG 8 cut(s) 5, 150, 197, 320, 560, 692, 899, 1031
CviQI GTAC 2 cut(s) 13, 966
DdeI CTNAG 6 cut(s) 266, 284, 541, 578, 618, 863
Eco130I CCWWGG 4 cut(s) 48, 149, 668, 1071
Eco147I AGGCCT 1 cut(s) 112
Eco47I GGWCC 4 cut(s) 45, 146, 200, 672
Eco57I CTGAAG 1 cut(s) 470
EcoO109I RGGNCCY 2 cut(s) 45, 672
EcoRII CCWGG 1 cut(s) 202
EcoT14I CCWWGG 4 cut(s) 48, 149, 668, 1071
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 4 cut(s) 48, 149, 668, 1071
FaeI CATG 8 cut(s) 8, 153, 200, 323, 563, 695, 902, 1034
FalI AAGNNNNNCTT 2 cut(s) 100, 132
FaqI GGGAC 1 cut(s) 824
FatI CATG 8 cut(s) 4, 149, 196, 319, 559, 691, 898, 1030
FbaI TGATCA 3 cut(s) 333, 709, 1042
FblI GTMKAC 1 cut(s) 818
Fnu4HI GCNGC 4 cut(s) 250, 372, 632, 696
FokI GGATG 6 cut(s) 158, 173, 343, 532, 661, 1028
Fsp4HI GCNGC 4 cut(s) 250, 372, 632, 696
FspBI CTAG 4 cut(s) 68, 638, 723, 746
GlaI GCGC 2 cut(s) 302, 917
GluI GCNGC 4 cut(s) 250, 372, 632, 696
GsuI CTGGAG 2 cut(s) 141, 661
HaeIII GGCC 2 cut(s) 59, 112
HapII CCGG 1 cut(s) 290
HgaI GACGC 1 cut(s) 843
HhaI GCGC 2 cut(s) 303, 918
Hin1I GRCGYC 1 cut(s) 854
Hin1II CATG 8 cut(s) 8, 153, 200, 323, 563, 695, 902, 1034
Hin6I GCGC 2 cut(s) 301, 916
HinP1I GCGC 2 cut(s) 301, 916
HindIII AAGCTT 1 cut(s) 348
HinfI GANTC 7 cut(s) 135, 154, 264, 294, 767, 772, 827
HpaII CCGG 1 cut(s) 290
Hpy166II GTNNAC 1 cut(s) 819
Hpy188I TCNGA 6 cut(s) 269, 287, 490, 579, 930, 1047
Hpy188III TCNNGA 7 cut(s) 68, 139, 158, 320, 470, 899, 998
Hpy8I GTNNAC 1 cut(s) 819
Hpy99I CGWCG 1 cut(s) 923
HpyAV CCTTC 3 cut(s) 121, 320, 635
HpyCH4III ACNGT 1 cut(s) 974
HpyCH4IV ACGT 3 cut(s) 485, 504, 992
HpyCH4V TGCA 6 cut(s) 4, 8, 249, 261, 346, 698
HpyF10VI GCNNNNNNNGC 3 cut(s) 258, 377, 732
HpyF3I CTNAG 6 cut(s) 266, 284, 541, 578, 618, 863
HpySE526I ACGT 3 cut(s) 485, 504, 992
Hsp92I GRCGYC 1 cut(s) 854
Hsp92II CATG 8 cut(s) 8, 153, 200, 323, 563, 695, 902, 1034
HspAI GCGC 2 cut(s) 301, 916
Ksp22I TGATCA 3 cut(s) 333, 709, 1042
LmnI GCTCC 2 cut(s) 537, 639
Lsp1109I GCAGC 3 cut(s) 261, 383, 682
LweI GCATC 1 cut(s) 758
MaeI CTAG 4 cut(s) 68, 638, 723, 746
MaeII ACGT 3 cut(s) 485, 504, 992
MaeIII GTNAC 4 cut(s) 305, 359, 855, 974
MboII GAAGA 7 cut(s) 335, 451, 454, 463, 902, 938, 1049
MfeI CAATTG 1 cut(s) 570
MflI RGATCY 2 cut(s) 64, 653
MluCI AATT 7 cut(s) 208, 277, 570, 796, 894, 942, 1055
MlyI GAGTC 2 cut(s) 148, 258
MmeI TCCRAC 3 cut(s) 112, 626, 993
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 2 cut(s) 771, 894
MseI TTAA 2 cut(s) 501, 870
MspI CCGG 1 cut(s) 290
MspR9I CCNGG 2 cut(s) 204, 291
MunI CAATTG 1 cut(s) 570
MvaI CCWGG 1 cut(s) 204
MvnI CGCG 3 cut(s) 303, 631, 918
MwoI GCNNNNNNNGC 3 cut(s) 258, 377, 732
NciI CCSGG 1 cut(s) 291
NcoI CCATGG 1 cut(s) 149
NlaIII CATG 8 cut(s) 8, 153, 200, 323, 563, 695, 902, 1034
NlaIV GGNNCC 1 cut(s) 635
NmuCI GTSAC 1 cut(s) 855
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 8, 1034
PaeI GCATGC 1 cut(s) 8
PagI TCATGA 2 cut(s) 319, 898
PceI AGGCCT 1 cut(s) 112
PciI ACATGT 1 cut(s) 1030
PcsI WCGNNNNNNNCGW 1 cut(s) 776
PdmI GAANNNNTTC 2 cut(s) 771, 894
PfeI GAWTC 5 cut(s) 135, 294, 767, 772, 827
PflMI CCANNNNNTGG 1 cut(s) 884
PfoI TCCNGGA 1 cut(s) 202
PkrI GCNGC 4 cut(s) 251, 373, 633, 697
PleI GAGTC 2 cut(s) 148, 258
PpsI GAGTC 2 cut(s) 148, 258
PpuMI RGGWCCY 2 cut(s) 45, 672
PscI ACATGT 1 cut(s) 1030
Psp5II RGGWCCY 2 cut(s) 45, 672
Psp6I CCWGG 1 cut(s) 202
PspGI CCWGG 1 cut(s) 202
PspN4I GGNNCC 1 cut(s) 635
PspPI GGNCC 4 cut(s) 45, 146, 200, 672
PspPPI RGGWCCY 2 cut(s) 45, 672
PsuI RGATCY 2 cut(s) 64, 653
RsaI GTAC 2 cut(s) 14, 967
RsaNI GTAC 2 cut(s) 13, 966
SaqAI TTAA 2 cut(s) 501, 870
SatI GCNGC 4 cut(s) 250, 372, 632, 696
Sau96I GGNCC 4 cut(s) 45, 146, 200, 672
ScaI AGTACT 2 cut(s) 14, 967
SchI GAGTC 2 cut(s) 148, 258
ScrFI CCNGG 2 cut(s) 204, 291
SfaNI GCATC 1 cut(s) 758
SinI GGWCC 4 cut(s) 45, 146, 200, 672
SmlI CTYRAG 2 cut(s) 610, 998
SmoI CTYRAG 2 cut(s) 610, 998
SphI GCATGC 1 cut(s) 8
Sse9I AATT 7 cut(s) 208, 277, 570, 796, 894, 942, 1055
SseBI AGGCCT 1 cut(s) 112
SsiI CCGC 3 cut(s) 303, 631, 726
SspMI CTAG 4 cut(s) 68, 638, 723, 746
StuI AGGCCT 1 cut(s) 112
StyD4I CCNGG 2 cut(s) 202, 289
StyI CCWWGG 4 cut(s) 48, 149, 668, 1071
TaaI ACNGT 1 cut(s) 974
TaiI ACGT 3 cut(s) 488, 507, 995
TaqI TCGA 2 cut(s) 770, 949
TasI AATT 7 cut(s) 208, 277, 570, 796, 894, 942, 1055
TatI WGTACW 2 cut(s) 12, 965
TauI GCSGC 1 cut(s) 634
TfiI GAWTC 5 cut(s) 135, 294, 767, 772, 827
Tru1I TTAA 2 cut(s) 501, 870
Tru9I TTAA 2 cut(s) 501, 870
TscAI CASTG 2 cut(s) 238, 622
TseFI GTSAC 1 cut(s) 855
TseI GCWGC 3 cut(s) 249, 371, 695
Tsp45I GTSAC 1 cut(s) 855
TspDTI ATGAA 4 cut(s) 336, 819, 887, 1032
TspGWI ACGGA 1 cut(s) 486
TspRI CASTG 2 cut(s) 238, 622
Van91I CCANNNNNTGG 1 cut(s) 884
VpaK11BI GGWCC 4 cut(s) 45, 146, 200, 672
XapI RAATTY 1 cut(s) 942
XbaI TCTAGA 1 cut(s) 67
XceI RCATGY 2 cut(s) 8, 1034
XcmI CCANNNNNNNNNTGG 1 cut(s) 698
XmiI GTMKAC 1 cut(s) 818
XmnI GAANNNNTTC 2 cut(s) 771, 894
XspI CTAG 4 cut(s) 68, 638, 723, 746
ZrmI AGTACT 2 cut(s) 14, 967
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.