Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0010700

Physical Location & Seq

Genomic Coordinates Reverse (-)

879322 .. 883164

Gene Structure 3843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGTGTAACGTTCTCACTCTTCATCTCACTGTTAAAACAAGAATTATTTCAGTGATTAAAATTGTCACCGCAAATTATAAATTGAAAATTCCGCAAAGCCTTGTAGAAAACCTAGCACTAGCAAGCAATGGAGTTTTGGGGTTGAAGGTGCTATGGTGCTATGGTGCTGAGGTAAAAAGTGGTCAGTCTCTTGTTGTCGATCCTGGTGAAAAGCTCCTGCATCTTTCGCAGGCTTGTCTGGATGACCTTAAGAAAGCGAAGGGAAGCGATTCTATTTCACTCTTCGCGAAAGTTGGCGATCTGAAGCTTGTTCTTGGGTTTCTTTCTGCTGAGAAATCCCCTCAGTTAATGTTTGATATTGTGTTTGATGAGAAATTTGAGCTATCCCATAACTGGAAAAATGGGAGCGTCCACTTCACTGGATATAAGTCTTTTGTGGAGTCTGATTCTGAAGAGGAGGATGCACCACCTATTAGGGCACCTACTCTGGTTGATAAGGGAAAAGCAAAGGTTAATGGTACTGAGGTAGCTAAGAAACCTATTAAATCTGAGCAAAAGGAAGCTAGTAGCGATGATGAAGATGAATCTGATGATGAAGAGTTTGTTGGTCATCCGGCCTTGGCTGAGGCAGATGGCAGTAAAGATTTTGACAAAAGCGATGATGATTCTGACAGTGACGATGACAGTGATGACAGTGAAGAGGATGAAGAGACTCCGAAGAAGGCTGATGTTGGCAAGAAGCGACCTGCTGAATCTTCTAAAACACCTGCTAATGACAAGAAGCCAAAGTTTGTTACTCCTGAAAAGATTGGTAGCAAGAAAGGCAGCGTCCACACAGCAACTCCACACCCTTCAAAGCAGACTGGGAAAAAACCAGCTACGTCCGACCAGTCAAAGCAGCAGGCTCCTAAATTAGGCGGTGCATTCCATTGCCAACCCTGCAACAGGTCGTTTAACTCGGATGGTGCATTGCAAAGCCATACAAAGGCAAAGCACAGTGCTGCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:0097305 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6 zf-met

Protein Analysis

337

Amino Acids

36.36

Weight (kDa)

5.75

Isoelectric Point (pI)

34.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NPL	PF17800	54 - 142	3.5e-14	Nucleoplasmin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010700)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03740
fragaria_vesca	FvH4_6g17790
malus_domestica	MD12G1017000.v1.1 MD14G1014900.v1.1
prunus_persica	Prupe.7G118500_v2.0.a1 Prupe.7G118500_v2.0.a1
pyrus_communis	pycom12g01380 pycom14g01240
rosa_chinensis	RchiOBHm_Chr3g0472041
rosa_laevigata	RLG00000024110
rosa_multiflora	Rmu_sc0002532.1_g000010
rosa_roxburghii	Rroxscaffold_6G00409300
rosa_rugosa	Rorug03G0121800
rosa_samantha	Rh3AG173400 Rh3AG173500 Rh3BG198900 Rh3CG190000 Rh3CG197400 Rh3DG175600
rosa_wichuraiana	Rw3G016710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	78
AarI	CACCTGC	1 cut(s)	775
Acc36I	ACCTGC	2 cut(s)	754, 775
AccB1I	GGYRCC	1 cut(s)	478
AccII	CGCG	1 cut(s)	287
AciI	CCGC	3 cut(s)	69, 92, 918
AclI	AACGTT	1 cut(s)	9
AclWI	GGATC	1 cut(s)	194
AcsI	RAATTY	2 cut(s)	87, 374
AcuI	CTGAAG	2 cut(s)	323, 471
AfaI	GTAC	1 cut(s)	520
AfiI	CCNNNNNNNGG	4 cut(s)	393, 914, 945, 985
AflII	CTTAAG	1 cut(s)	248
AgsI	TTSAA	3 cut(s)	85, 145, 855
AjnI	CCWGG	1 cut(s)	202
AjuI	GAANNNNNNNTTGG	2 cut(s)	588, 620
AluBI	AGCT	6 cut(s)	214, 307, 382, 530, 563, 878
AluI	AGCT	6 cut(s)	214, 307, 382, 530, 563, 878
Alw26I	GTCTC	2 cut(s)	192, 704
AlwI	GGATC	1 cut(s)	194
AoxI	GGCC	1 cut(s)	615
ApeKI	GCWGC	3 cut(s)	825, 898, 1001
ApoI	RAATTY	2 cut(s)	87, 374
Asp700I	GAANNNNTTC	2 cut(s)	46, 268
AsuHPI	GGTGA	2 cut(s)	58, 218
BaeGI	GKGCMC	1 cut(s)	481
BaeI	ACNNNNGTAYC	2 cut(s)	510, 543
BanI	GGYRCC	1 cut(s)	478
BbvCI	CCTCAGC	2 cut(s)	168, 624
BbvI	GCAGC	3 cut(s)	837, 910, 988
BccI	CCATC	2 cut(s)	626, 956
BciT130I	CCWGG	1 cut(s)	204
BcoDI	GTCTC	2 cut(s)	192, 704
BfaI	CTAG	3 cut(s)	113, 119, 564
BfrI	CTTAAG	1 cut(s)	248
BfuAI	ACCTGC	2 cut(s)	754, 775
BisI	GCNGC	3 cut(s)	826, 899, 1002
BlsI	GCNGC	3 cut(s)	827, 900, 1003
Bme1390I	CCNGG	1 cut(s)	204
BmiI	GGNNCC	2 cut(s)	480, 906
BmrFI	CCNGG	1 cut(s)	204
BmrI	ACTGGG	1 cut(s)	873
BmsI	GCATC	2 cut(s)	229, 451
BmuI	ACTGGG	1 cut(s)	873
Bpu10I	CCTNAGC	2 cut(s)	168, 624
BsaJI	CCNNGG	1 cut(s)	618
BsaXI	ACNNNNNCTCC	2 cut(s)	826, 856
Bsc4I	CCNNNNNNNGG	4 cut(s)	393, 914, 945, 985
Bse1I	ACTGG	4 cut(s)	398, 424, 868, 889
Bse3DI	GCAATG	3 cut(s)	133, 928, 968
BseBI	CCWGG	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	618
BseGI	GGATG	5 cut(s)	247, 466, 610, 709, 967
BseLI	CCNNNNNNNGG	4 cut(s)	393, 914, 945, 985
BseMI	GCAATG	3 cut(s)	133, 928, 968
BseMII	CTCAG	6 cut(s)	159, 321, 356, 513, 540, 615
BseNI	ACTGG	4 cut(s)	398, 424, 868, 889
BseRI	GAGGAG	1 cut(s)	470
BseSI	GKGCMC	1 cut(s)	481
BseXI	GCAGC	3 cut(s)	837, 910, 988
Bsh1236I	CGCG	1 cut(s)	287
BshFI	GGCC	1 cut(s)	617
BshNI	GGYRCC	1 cut(s)	478
BsiSI	CCGG	1 cut(s)	614
BslI	CCNNNNNNNGG	4 cut(s)	393, 914, 945, 985
BsmAI	GTCTC	2 cut(s)	192, 704
BsmI	GAATGC	1 cut(s)	923
BsnI	GGCC	1 cut(s)	617
Bsp1286I	GDGCHC	1 cut(s)	481
Bsp143I	GATC	2 cut(s)	199, 298
Bsp68I	TCGCGA	1 cut(s)	287
BspACI	CCGC	3 cut(s)	69, 92, 918
BspANI	GGCC	1 cut(s)	617
BspCNI	CTCAG	6 cut(s)	160, 322, 355, 514, 541, 616
BspFNI	CGCG	1 cut(s)	287
BspLI	GGNNCC	2 cut(s)	480, 906
BspMI	ACCTGC	2 cut(s)	754, 775
BspPI	GGATC	1 cut(s)	194
BspT107I	GGYRCC	1 cut(s)	478
BspTI	CTTAAG	1 cut(s)	248
BsrDI	GCAATG	3 cut(s)	133, 928, 968
BsrI	ACTGG	4 cut(s)	398, 424, 868, 889
BssECI	CCNNGG	1 cut(s)	618
BssMI	GATC	2 cut(s)	199, 298
BssT1I	CCWWGG	1 cut(s)	618
Bst2UI	CCWGG	1 cut(s)	204
Bst4CI	ACNGT	5 cut(s)	31, 674, 686, 695, 998
Bst6I	CTCTTC	6 cut(s)	24, 287, 447, 591, 693, 702
BstAFI	CTTAAG	1 cut(s)	248
BstC8I	GCNNGC	3 cut(s)	124, 231, 903
BstDEI	CTNAG	7 cut(s)	168, 330, 342, 522, 531, 549, 624
BstENI	CCTNNNNNAGG	2 cut(s)	912, 943
BstF5I	GGATG	5 cut(s)	247, 466, 610, 709, 967
BstFNI	CGCG	1 cut(s)	287
BstKTI	GATC	2 cut(s)	202, 301
BstMAI	GTCTC	2 cut(s)	192, 704
BstMBI	GATC	2 cut(s)	199, 298
BstMWI	GCNNNNNNNGC	3 cut(s)	226, 822, 939
BstNI	CCWGG	1 cut(s)	204
BstSCI	CCNGG	1 cut(s)	202
BstSLI	GKGCMC	1 cut(s)	481
BstUI	CGCG	1 cut(s)	287
BstV1I	GCAGC	3 cut(s)	837, 910, 988
BstXI	CCANNNNNNTGG	1 cut(s)	419
BsuRI	GGCC	1 cut(s)	617
BtgZI	GCGATG	2 cut(s)	585, 672
BtsCI	GGATG	5 cut(s)	247, 466, 610, 709, 967
BtsIMutI	CAGTG	7 cut(s)	27, 57, 417, 679, 691, 700, 1003
BtuMI	TCGCGA	1 cut(s)	287
BveI	ACCTGC	2 cut(s)	754, 775
Cac8I	GCNNGC	3 cut(s)	124, 231, 903
CseI	GACGC	2 cut(s)	397, 817
Csp6I	GTAC	1 cut(s)	519
CviQI	GTAC	1 cut(s)	519
DdeI	CTNAG	7 cut(s)	168, 330, 342, 522, 531, 549, 624
DpnI	GATC	2 cut(s)	201, 300
DpnII	GATC	2 cut(s)	199, 298
Eam1104I	CTCTTC	6 cut(s)	24, 287, 447, 591, 693, 702
EarI	CTCTTC	6 cut(s)	24, 287, 447, 591, 693, 702
Eco130I	CCWWGG	1 cut(s)	618
Eco57I	CTGAAG	2 cut(s)	323, 471
EcoNI	CCTNNNNNAGG	2 cut(s)	912, 943
EcoRII	CCWGG	1 cut(s)	202
EcoT14I	CCWWGG	1 cut(s)	618
ErhI	CCWWGG	1 cut(s)	618
FaiI	YATR	6 cut(s)	78, 154, 162, 390, 426, 981
Fnu4HI	GCNGC	3 cut(s)	826, 899, 1002
FokI	GGATG	5 cut(s)	254, 473, 597, 716, 974
Fsp4HI	GCNGC	3 cut(s)	826, 899, 1002
FspBI	CTAG	3 cut(s)	113, 119, 564
GluI	GCNGC	3 cut(s)	826, 899, 1002
HaeIII	GGCC	1 cut(s)	617
HapII	CCGG	1 cut(s)	614
HgaI	GACGC	2 cut(s)	397, 817
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	7 cut(s)	269, 440, 446, 584, 665, 712, 752
HpaII	CCGG	1 cut(s)	614
HphI	GGTGA	2 cut(s)	58, 218
Hpy166II	GTNNAC	2 cut(s)	412, 832
Hpy188I	TCNGA	9 cut(s)	303, 445, 451, 550, 589, 670, 717, 886, 961
Hpy188III	TCNNGA	3 cut(s)	239, 286, 800
Hpy8I	GTNNAC	2 cut(s)	412, 832
HpyAV	CCTTC	4 cut(s)	139, 253, 715, 861
HpyCH4III	ACNGT	5 cut(s)	31, 674, 686, 695, 998
HpyCH4IV	ACGT	2 cut(s)	9, 881
HpyCH4V	TGCA	7 cut(s)	220, 464, 923, 942, 968, 973, 1004
HpyF10VI	GCNNNNNNNGC	3 cut(s)	226, 822, 939
HpyF3I	CTNAG	7 cut(s)	168, 330, 342, 522, 531, 549, 624
HpySE526I	ACGT	2 cut(s)	9, 881
Kzo9I	GATC	2 cut(s)	199, 298
LmnI	GCTCC	3 cut(s)	219, 405, 910
Lsp1109I	GCAGC	3 cut(s)	837, 910, 988
LweI	GCATC	2 cut(s)	229, 451
MaeI	CTAG	3 cut(s)	113, 119, 564
MaeII	ACGT	2 cut(s)	9, 881
MaeIII	GTNAC	4 cut(s)	5, 64, 674, 793
MalI	GATC	2 cut(s)	201, 300
MboI	GATC	2 cut(s)	199, 298
MboII	GAAGA	9 cut(s)	11, 274, 464, 590, 608, 710, 719, 730, 747
MhlI	GDGCHC	1 cut(s)	481
MluCI	AATT	7 cut(s)	42, 60, 73, 80, 87, 374, 911
MlyI	GAGTC	2 cut(s)	449, 706
MmeI	TCCRAC	1 cut(s)	909
MnlI	CCTC	7 cut(s)	163, 351, 448, 451, 517, 619, 694
MroXI	GAANNNNTTC	2 cut(s)	46, 268
MseI	TTAA	7 cut(s)	33, 57, 249, 347, 513, 543, 954
MspCI	CTTAAG	1 cut(s)	248
MspI	CCGG	1 cut(s)	614
MspR9I	CCNGG	1 cut(s)	204
Mva1269I	GAATGC	1 cut(s)	923
MvaI	CCWGG	1 cut(s)	204
MvnI	CGCG	1 cut(s)	287
MwoI	GCNNNNNNNGC	3 cut(s)	226, 822, 939
NdeII	GATC	2 cut(s)	199, 298
NlaIV	GGNNCC	2 cut(s)	480, 906
NmuCI	GTSAC	2 cut(s)	64, 674
NruI	TCGCGA	1 cut(s)	287
PaqCI	CACCTGC	1 cut(s)	775
PctI	GAATGC	1 cut(s)	923
PdmI	GAANNNNTTC	2 cut(s)	46, 268
PfeI	GAWTC	5 cut(s)	269, 446, 584, 665, 752
PkrI	GCNGC	3 cut(s)	827, 900, 1003
PleI	GAGTC	2 cut(s)	448, 706
PpsI	GAGTC	2 cut(s)	448, 706
PsiI	TTATAA	1 cut(s)	78
Psp1406I	AACGTT	1 cut(s)	9
Psp6I	CCWGG	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	202
PspN4I	GGNNCC	2 cut(s)	480, 906
RruI	TCGCGA	1 cut(s)	287
RsaI	GTAC	1 cut(s)	520
RsaNI	GTAC	1 cut(s)	519
SaqAI	TTAA	7 cut(s)	33, 57, 249, 347, 513, 543, 954
SatI	GCNGC	3 cut(s)	826, 899, 1002
Sau3AI	GATC	2 cut(s)	199, 298
SchI	GAGTC	2 cut(s)	449, 706
ScrFI	CCNGG	1 cut(s)	204
SduI	GDGCHC	1 cut(s)	481
SfaNI	GCATC	2 cut(s)	229, 451
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	7 cut(s)	42, 60, 73, 80, 87, 374, 911
SsiI	CCGC	3 cut(s)	69, 92, 918
SspMI	CTAG	3 cut(s)	113, 119, 564
StyD4I	CCNGG	1 cut(s)	202
StyI	CCWWGG	1 cut(s)	618
TaaI	ACNGT	5 cut(s)	31, 674, 686, 695, 998
TaiI	ACGT	2 cut(s)	12, 884
TaqI	TCGA	1 cut(s)	198
TasI	AATT	7 cut(s)	42, 60, 73, 80, 87, 374, 911
TfiI	GAWTC	5 cut(s)	269, 446, 584, 665, 752
Tru1I	TTAA	7 cut(s)	33, 57, 249, 347, 513, 543, 954
Tru9I	TTAA	7 cut(s)	33, 57, 249, 347, 513, 543, 954
TscAI	CASTG	7 cut(s)	34, 57, 424, 679, 691, 700, 1003
TseFI	GTSAC	2 cut(s)	64, 674
TseI	GCWGC	3 cut(s)	825, 898, 1001
Tsp45I	GTSAC	2 cut(s)	64, 674
TspDTI	ATGAA	5 cut(s)	11, 591, 597, 609, 720
TspRI	CASTG	7 cut(s)	34, 57, 424, 679, 691, 700, 1003
Vha464I	CTTAAG	1 cut(s)	248
XagI	CCTNNNNNAGG	2 cut(s)	912, 943
XapI	RAATTY	2 cut(s)	87, 374
XmnI	GAANNNNTTC	2 cut(s)	46, 268
XspI	CTAG	3 cut(s)	113, 119, 564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.