Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0005069

Physical Location & Seq

Genomic Coordinates Forward (+)

2418576 .. 2420254

Gene Structure 1679 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1461 bp

ATGTATATAACTTTTAGAGAGGTTTTGGTGGGAGAGGTCCAGAGGGGATCTCTTCCCTTATTCCACAACTTCCCCCAACCCCCATTTTATTTATGGAAAACTAATAAAAATTTCTTGAAAACTTTGAGTTTTAATGAAAATGCCTTGAAAACTTTGAGTTTTAACGAAAATAACAAAATAAAAAGTAAAATGAATAGTATCATAATTGACATTTTAATAAAGTTTCATTTTATTTATAATATACATCTTTTTTTTTTTTTTTCCTTTTGTCTCAATCCTTTAAATAATCTTCCACCCCCTACATCCCTCCCCTCTGACTCTCCATCAATGCCACATTTGACATTCTTCTCCCCTATCCCTCCAACAAAACCAGGAAATTTTTTTTTTCAGATGGGCAAGAAAATGAAGCTCCCTTTTCTCTCCAAGAACACATCAGAGATATCAAGATCTTCCTCTTCTTCTTCCTCCTCATGGCCTTGGCCTTCTTGTACTCAAACCAGAACCATTTCTTTCAGAACTGGCAATGATATTTTCAAGACCATAAACTCAGCCTACTTCGACACTACAAACCCTACAACAGATTTGGCGTTGGTGGATAGCACACCAGACTCGGTCTTCACGAACTCGTCATCTCACGAGTGTCTCAGCTTCACCACCGCCTCTAAAGATTCTAGAGGCGGTGGAGGAGCAGGAGGAGGGGACGCAATAGAGAGTGTGATTAAAGGGTTGAGGTCAGAGAGGCTCTTCTTTGAGCCAGCTGGTCAGACAAGCTCTGTGCTAGTGGAGGCGGCGCCGGCAGCACCATATGATGATGGTGGTAATGGGGTTAATAATGTCATTCCATTCAAGGAGAGCGTGGCTTTGTCAATGGACTCGACAGACCCGATTGTGGATTTTAGAAAATCTATGGAGGAAATGGTGGAAGCTCATGGTTTGAAGGACTGGGAGAATCTTGAAGAGCTTTTGTGCTGGTACTTGAGGGTGAATGGTAAGAGCAATCATGGATATGTTGTTGGAGCTTTTGTTGATCTCTTGGTAGGTCTAGCATTTACCACCACTAGAAGTAATTCTTGTTCTTGTGTTATTAACTCTCCTTCTTCTCCCTTATCTAATTTTTACAATAGTATTACTACTACTTCTTCGTCGCTGTCGTCGTCTTCTTCTTCTACTTCTTCTGCTACTACTCCTTGTGTTTCCTCCATAGAAGAAGAGTCTGAAAGTACTAAGATCAAATTAAGGAAGAAGAAGCTGACGAGGACGACGAAGATGATGCTTCGTCTTAGCCAGTTAATTACTTGTTTTTTTTATTCAATGGAAAATCAGAACATATGTATACTAGTAGTAGTAGAAATGATAGTGAAAAAGCTTAAACTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAAATTCTTGTAGAGAAATTTTTCATGATAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

487

Amino Acids

53.84

Weight (kDa)

8.45

Isoelectric Point (pI)

51.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ovate	PF04844	292 - 348	1.1e-22	Transcriptional repressor, ovate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04820
fragaria_vesca	FvH4_6g19870
malus_domestica	MD02G1258900.v1.1 MD07G1061800.v1.1 MD07G1061900.v1.1 MD12G1034200.v1.1 MD14G1035600.v1.1
prunus_persica	Prupe.2G071500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1 Prupe.7G098500_v2.0.a1
pyrus_communis	pycom07g04730 pycom12g03170 pycom14g03130
rosa_chinensis	RchiOBHm_Chr3g0475291
rosa_laevigata	RLG00000023854
rosa_multiflora	Rmu_ssc0000140.1_g000002
rosa_roxburghii	Rroxscaffold_6G00406410
rosa_rugosa	Rorug03G0147700
rosa_samantha	Rh3AG197700 Rh3BG228000 Rh3DG223200
rosa_wichuraiana	Rw3G017970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	237
AccB1I	GGYRCC	1 cut(s)	790
AccI	GTMKAC	1 cut(s)	1333
AciI	CCGC	3 cut(s)	657, 678, 788
AclWI	GGATC	1 cut(s)	55
AcsI	RAATTY	4 cut(s)	109, 376, 1428, 1442
AcyI	GRCGYC	1 cut(s)	791
AfaI	GTAC	3 cut(s)	490, 974, 1222
AfiI	CCNNNNNNNGG	2 cut(s)	471, 889
AgsI	TTSAA	7 cut(s)	118, 148, 535, 847, 937, 956, 1311
AhlI	ACTAGT	1 cut(s)	1336
AjnI	CCWGG	1 cut(s)	370
AluBI	AGCT	9 cut(s)	409, 648, 758, 771, 926, 961, 1019, 1249, 1366
AluI	AGCT	9 cut(s)	409, 648, 758, 771, 926, 961, 1019, 1249, 1366
Alw26I	GTCTC	2 cut(s)	275, 647
AlwI	GGATC	1 cut(s)	55
AoxI	GGCC	2 cut(s)	473, 479
ApeKI	GCWGC	1 cut(s)	797
ApoI	RAATTY	4 cut(s)	109, 376, 1428, 1442
Asp700I	GAANNNNTTC	3 cut(s)	505, 1066, 1445
AspLEI	GCGC	1 cut(s)	793
AspS9I	GGNCC	1 cut(s)	37
AsuHPI	GGTGA	2 cut(s)	643, 994
AvaII	GGWCC	1 cut(s)	37
BanI	GGYRCC	1 cut(s)	790
BauI	CACGAG	1 cut(s)	635
BbsI	GAAGAC	2 cut(s)	607, 1149
BbvI	GCAGC	1 cut(s)	809
BccI	CCATC	3 cut(s)	331, 385, 806
BcgI	CGANNNNNNTGC	2 cut(s)	1252, 1286
BciT130I	CCWGG	1 cut(s)	372
BcoDI	GTCTC	2 cut(s)	275, 647
BcuI	ACTAGT	1 cut(s)	1336
BfaI	CTAG	5 cut(s)	672, 779, 1043, 1059, 1337
BfoI	RGCGCY	1 cut(s)	794
BglII	AGATCT	1 cut(s)	446
BisI	GCNGC	2 cut(s)	789, 798
BlsI	GCNGC	2 cut(s)	790, 799
BmcAI	AGTACT	1 cut(s)	1222
Bme1390I	CCNGG	1 cut(s)	372
Bme18I	GGWCC	1 cut(s)	37
BmgT120I	GGNCC	1 cut(s)	37
BmiI	GGNNCC	1 cut(s)	792
BmrFI	CCNGG	1 cut(s)	372
BmrI	ACTGGG	1 cut(s)	952
BmsI	GCATC	1 cut(s)	1260
BmuI	ACTGGG	1 cut(s)	952
BpiI	GAAGAC	2 cut(s)	607, 1149
BplI	GAGNNNNNCTC	2 cut(s)	34, 66
BpuEI	CTTGAG	1 cut(s)	997
BsaHI	GRCGYC	1 cut(s)	791
BsaJI	CCNNGG	1 cut(s)	476
BsaXI	ACNNNNNCTCC	4 cut(s)	1008, 1038, 1362, 1392
Bsc4I	CCNNNNNNNGG	2 cut(s)	471, 889
Bse118I	RCCGGY	1 cut(s)	793
Bse1I	ACTGG	3 cut(s)	523, 947, 1285
Bse3DI	GCAATG	1 cut(s)	529
BseBI	CCWGG	1 cut(s)	372
BseDI	CCNNGG	1 cut(s)	476
BseGI	GGATG	1 cut(s)	302
BseLI	CCNNNNNNNGG	2 cut(s)	471, 889
BseMI	GCAATG	1 cut(s)	529
BseMII	CTCAG	2 cut(s)	561, 658
BseNI	ACTGG	3 cut(s)	523, 947, 1285
BseRI	GAGGAG	3 cut(s)	457, 699, 708
BseXI	GCAGC	1 cut(s)	809
BshFI	GGCC	2 cut(s)	475, 481
BshNI	GGYRCC	1 cut(s)	790
BsiSI	CCGG	1 cut(s)	794
BslFI	GGGAC	1 cut(s)	713
BslI	CCNNNNNNNGG	2 cut(s)	471, 889
BsmAI	GTCTC	2 cut(s)	275, 647
BsmFI	GGGAC	1 cut(s)	713
BsnI	GGCC	2 cut(s)	475, 481
Bsp143I	GATC	4 cut(s)	47, 446, 1027, 1227
BspACI	CCGC	3 cut(s)	657, 678, 788
BspANI	GGCC	2 cut(s)	475, 481
BspCNI	CTCAG	2 cut(s)	560, 657
BspHI	TCATGA	1 cut(s)	1449
BspLI	GGNNCC	1 cut(s)	792
BspPI	GGATC	1 cut(s)	55
BspQI	GCTCTTC	2 cut(s)	749, 951
BspT107I	GGYRCC	1 cut(s)	790
BsrDI	GCAATG	1 cut(s)	529
BsrFI	RCCGGY	1 cut(s)	793
BsrI	ACTGG	3 cut(s)	523, 947, 1285
BssAI	RCCGGY	1 cut(s)	793
BssECI	CCNNGG	1 cut(s)	476
BssMI	GATC	4 cut(s)	47, 446, 1027, 1227
BssNAI	GTATAC	1 cut(s)	1334
BssNI	GRCGYC	1 cut(s)	791
BssSI	CACGAG	1 cut(s)	635
BssT1I	CCWWGG	1 cut(s)	476
Bst1107I	GTATAC	1 cut(s)	1334
Bst2BI	CACGAG	1 cut(s)	635
Bst2UI	CCWGG	1 cut(s)	372
Bst6I	CTCTTC	5 cut(s)	57, 460, 749, 951, 1203
BstACI	GRCGYC	1 cut(s)	791
BstC8I	GCNNGC	2 cut(s)	756, 795
BstDEI	CTNAG	4 cut(s)	547, 644, 1224, 1280
BstF5I	GGATG	1 cut(s)	302
BstH2I	RGCGCY	1 cut(s)	794
BstHHI	GCGC	1 cut(s)	793
BstKTI	GATC	4 cut(s)	50, 449, 1030, 1230
BstMAI	GTCTC	2 cut(s)	275, 647
BstMBI	GATC	4 cut(s)	47, 446, 1027, 1227
BstMWI	GCNNNNNNNGC	2 cut(s)	794, 797
BstNI	CCWGG	1 cut(s)	372
BstSCI	CCNGG	1 cut(s)	370
BstV1I	GCAGC	1 cut(s)	809
BstV2I	GAAGAC	2 cut(s)	607, 1149
BstX2I	RGATCY	2 cut(s)	47, 446
BstYI	RGATCY	2 cut(s)	47, 446
BstZ17I	GTATAC	1 cut(s)	1334
BsuRI	GGCC	2 cut(s)	475, 481
BtsCI	GGATG	1 cut(s)	302
Cac8I	GCNNGC	2 cut(s)	756, 795
CciI	TCATGA	1 cut(s)	1449
CfoI	GCGC	1 cut(s)	793
Cfr10I	RCCGGY	1 cut(s)	793
Cfr13I	GGNCC	1 cut(s)	37
CseI	GACGC	1 cut(s)	710
Csp6I	GTAC	3 cut(s)	489, 973, 1221
CviAII	CATG	5 cut(s)	471, 929, 1001, 1450, 1458
CviQI	GTAC	3 cut(s)	489, 973, 1221
DdeI	CTNAG	4 cut(s)	547, 644, 1224, 1280
DinI	GGCGCC	1 cut(s)	792
DpnI	GATC	4 cut(s)	49, 448, 1029, 1229
DpnII	GATC	4 cut(s)	47, 446, 1027, 1227
DraI	TTTAAA	1 cut(s)	282
Eam1104I	CTCTTC	5 cut(s)	57, 460, 749, 951, 1203
EarI	CTCTTC	5 cut(s)	57, 460, 749, 951, 1203
Eco130I	CCWWGG	1 cut(s)	476
Eco32I	GATATC	1 cut(s)	441
Eco47I	GGWCC	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	370
EcoRV	GATATC	1 cut(s)	441
EcoT14I	CCWWGG	1 cut(s)	476
EgeI	GGCGCC	1 cut(s)	792
EheI	GGCGCC	1 cut(s)	792
ErhI	CCWWGG	1 cut(s)	476
FaeI	CATG	5 cut(s)	474, 932, 1004, 1453, 1461
FalI	AAGNNNNNCTT	2 cut(s)	1054, 1086
FaqI	GGGAC	1 cut(s)	713
FatI	CATG	5 cut(s)	470, 928, 1000, 1449, 1457
FauNDI	CATATG	2 cut(s)	805, 1328
FblI	GTMKAC	1 cut(s)	1333
Fnu4HI	GCNGC	2 cut(s)	789, 798
FokI	GGATG	1 cut(s)	289
Fsp4HI	GCNGC	2 cut(s)	789, 798
FspBI	CTAG	5 cut(s)	672, 779, 1043, 1059, 1337
GlaI	GCGC	1 cut(s)	792
GluI	GCNGC	2 cut(s)	789, 798
HaeII	RGCGCY	1 cut(s)	794
HaeIII	GGCC	2 cut(s)	475, 481
HapII	CCGG	1 cut(s)	794
HgaI	GACGC	1 cut(s)	710
HhaI	GCGC	1 cut(s)	793
Hin1I	GRCGYC	1 cut(s)	791
Hin1II	CATG	5 cut(s)	474, 932, 1004, 1453, 1461
Hin6I	GCGC	1 cut(s)	791
HinP1I	GCGC	1 cut(s)	791
HindIII	AAGCTT	1 cut(s)	1364
HinfI	GANTC	6 cut(s)	317, 608, 668, 872, 949, 1211
HpaII	CCGG	1 cut(s)	794
HphI	GGTGA	2 cut(s)	643, 994
Hpy166II	GTNNAC	1 cut(s)	1334
Hpy188I	TCNGA	8 cut(s)	316, 390, 436, 515, 736, 765, 1216, 1323
Hpy188III	TCNNGA	9 cut(s)	40, 115, 444, 535, 619, 635, 672, 953, 1450
Hpy8I	GTNNAC	1 cut(s)	1334
Hpy99I	CGWCG	3 cut(s)	1147, 1156, 1264
HpyAV	CCTTC	3 cut(s)	492, 931, 1104
HpyF10VI	GCNNNNNNNGC	2 cut(s)	794, 797
HpyF3I	CTNAG	4 cut(s)	547, 644, 1224, 1280
Hsp92I	GRCGYC	1 cut(s)	791
Hsp92II	CATG	5 cut(s)	474, 932, 1004, 1453, 1461
HspAI	GCGC	1 cut(s)	791
KasI	GGCGCC	1 cut(s)	790
KroI	GCCGGC	1 cut(s)	793
KroNI	GCCGGC	1 cut(s)	795
Kzo9I	GATC	4 cut(s)	47, 446, 1027, 1227
LguI	GCTCTTC	2 cut(s)	749, 951
LmnI	GCTCC	3 cut(s)	414, 686, 1016
Lsp1109I	GCAGC	1 cut(s)	809
LweI	GCATC	1 cut(s)	1260
MaeI	CTAG	5 cut(s)	672, 779, 1043, 1059, 1337
MalI	GATC	4 cut(s)	49, 448, 1029, 1229
MboI	GATC	4 cut(s)	47, 446, 1027, 1227
MflI	RGATCY	2 cut(s)	47, 446
MluCI	AATT	9 cut(s)	109, 204, 376, 1066, 1111, 1232, 1290, 1428, 1442
Mly113I	GGCGCC	1 cut(s)	791
MlyI	GAGTC	4 cut(s)	311, 602, 866, 1220
MmeI	TCCRAC	2 cut(s)	386, 994
MroNI	GCCGGC	1 cut(s)	793
MroXI	GAANNNNTTC	3 cut(s)	505, 1066, 1445
MslI	CAYNNNNRTG	1 cut(s)	1005
MspA1I	CMGCKG	1 cut(s)	758
MspI	CCGG	1 cut(s)	794
MspR9I	CCNGG	1 cut(s)	372
MvaI	CCWGG	1 cut(s)	372
MwoI	GCNNNNNNNGC	2 cut(s)	794, 797
NaeI	GCCGGC	1 cut(s)	795
NarI	GGCGCC	1 cut(s)	791
NdeI	CATATG	2 cut(s)	805, 1328
NdeII	GATC	4 cut(s)	47, 446, 1027, 1227
NgoMIV	GCCGGC	1 cut(s)	793
NlaIII	CATG	5 cut(s)	474, 932, 1004, 1453, 1461
NlaIV	GGNNCC	1 cut(s)	792
PagI	TCATGA	1 cut(s)	1449
PciSI	GCTCTTC	2 cut(s)	749, 951
PcsI	WCGNNNNNNNCGW	5 cut(s)	617, 881, 1148, 1151, 1259
PdiI	GCCGGC	1 cut(s)	795
PdmI	GAANNNNTTC	3 cut(s)	505, 1066, 1445
PfeI	GAWTC	2 cut(s)	668, 949
PflFI	GACNNNGTC	1 cut(s)	611
PkrI	GCNGC	2 cut(s)	790, 799
PleI	GAGTC	4 cut(s)	311, 602, 866, 1219
PluTI	GGCGCC	1 cut(s)	794
PpsI	GAGTC	4 cut(s)	311, 602, 866, 1219
PsiI	TTATAA	1 cut(s)	237
Psp6I	CCWGG	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	370
PspN4I	GGNNCC	1 cut(s)	792
PspPI	GGNCC	1 cut(s)	37
PsrI	GAACNNNNNNTAC	2 cut(s)	1057, 1089
PsuI	RGATCY	2 cut(s)	47, 446
PsyI	GACNNNGTC	1 cut(s)	611
PvuII	CAGCTG	1 cut(s)	758
RsaI	GTAC	3 cut(s)	490, 974, 1222
RsaNI	GTAC	3 cut(s)	489, 973, 1221
RseI	CAYNNNNRTG	1 cut(s)	1005
SapI	GCTCTTC	2 cut(s)	749, 951
SatI	GCNGC	2 cut(s)	789, 798
Sau3AI	GATC	4 cut(s)	47, 446, 1027, 1227
Sau96I	GGNCC	1 cut(s)	37
ScaI	AGTACT	1 cut(s)	1222
SchI	GAGTC	4 cut(s)	311, 602, 866, 1220
ScrFI	CCNGG	1 cut(s)	372
SfaNI	GCATC	1 cut(s)	1260
SfoI	GGCGCC	1 cut(s)	792
SinI	GGWCC	1 cut(s)	37
SmiMI	CAYNNNNRTG	1 cut(s)	1005
SmlI	CTYRAG	1 cut(s)	976
SmoI	CTYRAG	1 cut(s)	976
SpeI	ACTAGT	1 cut(s)	1336
Sse9I	AATT	9 cut(s)	109, 204, 376, 1066, 1111, 1232, 1290, 1428, 1442
SsiI	CCGC	3 cut(s)	657, 678, 788
SspDI	GGCGCC	1 cut(s)	790
SspMI	CTAG	5 cut(s)	672, 779, 1043, 1059, 1337
StyD4I	CCNGG	1 cut(s)	370
StyI	CCWWGG	1 cut(s)	476
TaqI	TCGA	2 cut(s)	558, 875
TaqII	GACCGA	1 cut(s)	601
TasI	AATT	9 cut(s)	109, 204, 376, 1066, 1111, 1232, 1290, 1428, 1442
TatI	WGTACW	2 cut(s)	488, 1220
TauI	GCSGC	1 cut(s)	791
TfiI	GAWTC	2 cut(s)	668, 949
TseI	GCWGC	1 cut(s)	797
TspDTI	ATGAA	5 cut(s)	150, 206, 215, 419, 1438
Tth111I	GACNNNGTC	1 cut(s)	611
VpaK11BI	GGWCC	1 cut(s)	37
XapI	RAATTY	4 cut(s)	109, 376, 1428, 1442
XbaI	TCTAGA	1 cut(s)	671
XcmI	CCANNNNNNNNNTGG	1 cut(s)	90
XmiI	GTMKAC	1 cut(s)	1333
XmnI	GAANNNNTTC	3 cut(s)	505, 1066, 1445
XspI	CTAG	5 cut(s)	672, 779, 1043, 1059, 1337
ZrmI	AGTACT	1 cut(s)	1222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.