Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0003661

Physical Location & Seq

Genomic Coordinates Reverse (-)

5271250 .. 5271537

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGCAAAAATCCCTCGTGGTTTTTTTAACTGTAATCTTGAAGAAGAAACCAAACGAAGAAAAACAAGCTGGTGAATGTGGATCACAGAAGGAGAAGAAACCAGGCAAAATAGTAGATACCGATAAATCAAAGGACACTGGGGTTGCAGATGAGAACAGTTTATTAATTTATAAAAACAATTTGGTGTGCGGCGTGATTGACAAGGCGCAGTTTGGGCTCATGGTTTGGTCCATACAGTGCAGGAGCTCTATGGTTCAAATGCTGCAGGAATATTGCTTTCTGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005736 GO:0005911 GO:0006139 GO:0006351 GO:0006360 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0016070 GO:0018130 GO:0019438 GO:0030054 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0055029 GO:0055044 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_5

Protein Analysis

96

Amino Acids

10.74

Weight (kDa)

8.68

Isoelectric Point (pI)

19.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57660 AT3G57660
fragaria_vesca	FvH4_5g34330 FvH4_5g34330 FvH4_5g34330 FvH4_5g34330 FvH4_5g34330 FvH4_5g34330 FvH4_5g34330 FvH4_5g35030 FvH4_6g23210 FvH4_6g23210 FvH4_6g23210 FvH4_6g23210 FvH4_6g23210 FvH4_6g23210 FvH4_6g23210
malus_domestica	MD12G1066600.v1.1 MD14G1066700.v1.1
prunus_persica	Prupe.7G067700_v2.0.a1 Prupe.7G067700_v2.0.a1 Prupe.7G067700_v2.0.a1
pyrus_communis	pycom12g05800 pycom14g05430
rosa_chinensis	RchiOBHm_Chr3g0481021
rosa_laevigata	RLG00000023431
rosa_multiflora	Rmu_sc0002927.1_g000058
rosa_roxburghii	Rroxscaffold_6G00400730
rosa_rugosa	Rorug03G0189100
rosa_samantha	Rh3AG240000 Rh3BG275100 Rh3CG270600 Rh3DG266500
rosa_wichuraiana	Rw0G008430 Rw3G021430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	171
AciI	CCGC	1 cut(s)	189
AclWI	GGATC	1 cut(s)	88
AgsI	TTSAA	2 cut(s)	40, 257
AjnI	CCWGG	1 cut(s)	100
AluBI	AGCT	2 cut(s)	68, 246
AluI	AGCT	2 cut(s)	68, 246
Alw21I	GWGCWC	1 cut(s)	248
AlwI	GGATC	1 cut(s)	88
ApeKI	GCWGC	1 cut(s)	262
AseI	ATTAAT	1 cut(s)	164
AspLEI	GCGC	1 cut(s)	208
AspS9I	GGNCC	1 cut(s)	228
AsuHPI	GGTGA	1 cut(s)	83
AvaII	GGWCC	1 cut(s)	228
BanII	GRGCYC	2 cut(s)	219, 248
BauI	CACGAG	1 cut(s)	14
Bbv12I	GWGCWC	1 cut(s)	248
BbvI	GCAGC	1 cut(s)	249
BciT130I	CCWGG	1 cut(s)	102
BfmI	CTRYAG	1 cut(s)	263
BisI	GCNGC	2 cut(s)	190, 263
BlsI	GCNGC	2 cut(s)	191, 264
Bme1390I	CCNGG	1 cut(s)	102
Bme18I	GGWCC	1 cut(s)	228
BmgT120I	GGNCC	1 cut(s)	228
BmrFI	CCNGG	1 cut(s)	102
BmrI	ACTGGG	1 cut(s)	147
BmuI	ACTGGG	1 cut(s)	147
Bse1I	ACTGG	1 cut(s)	142
BseBI	CCWGG	1 cut(s)	102
BseNI	ACTGG	1 cut(s)	142
BseXI	GCAGC	1 cut(s)	249
BsgI	GTGCAG	1 cut(s)	259
BsiHKAI	GWGCWC	1 cut(s)	248
Bsp1286I	GDGCHC	2 cut(s)	219, 248
Bsp143I	GATC	1 cut(s)	80
BspACI	CCGC	1 cut(s)	189
BspMAI	CTGCAG	1 cut(s)	267
BspPI	GGATC	1 cut(s)	88
BsrI	ACTGG	1 cut(s)	142
BssMI	GATC	1 cut(s)	80
BssSI	CACGAG	1 cut(s)	14
Bst2BI	CACGAG	1 cut(s)	14
Bst2UI	CCWGG	1 cut(s)	102
Bst4CI	ACNGT	3 cut(s)	31, 158, 237
BstHHI	GCGC	1 cut(s)	208
BstKTI	GATC	1 cut(s)	83
BstMBI	GATC	1 cut(s)	80
BstMWI	GCNNNNNNNGC	1 cut(s)	214
BstNI	CCWGG	1 cut(s)	102
BstSCI	CCNGG	1 cut(s)	100
BstSFI	CTRYAG	1 cut(s)	263
BstV1I	GCAGC	1 cut(s)	249
BtsIMutI	CAGTG	2 cut(s)	135, 242
CfoI	GCGC	1 cut(s)	208
Cfr13I	GGNCC	1 cut(s)	228
CviAII	CATG	1 cut(s)	220
CviJI	RGCY	3 cut(s)	68, 217, 246
CviKI_1	RGCY	3 cut(s)	68, 217, 246
DpnI	GATC	1 cut(s)	82
DpnII	GATC	1 cut(s)	80
Ecl136II	GAGCTC	1 cut(s)	246
Eco24I	GRGCYC	2 cut(s)	219, 248
Eco47I	GGWCC	1 cut(s)	228
Eco53kI	GAGCTC	1 cut(s)	246
EcoICRI	GAGCTC	1 cut(s)	246
EcoRII	CCWGG	1 cut(s)	100
EcoT38I	GRGCYC	2 cut(s)	219, 248
FaeI	CATG	1 cut(s)	223
FaiI	YATR	4 cut(s)	171, 221, 233, 251
FatI	CATG	1 cut(s)	219
Fnu4HI	GCNGC	2 cut(s)	190, 263
FriOI	GRGCYC	2 cut(s)	219, 248
Fsp4HI	GCNGC	2 cut(s)	190, 263
GlaI	GCGC	1 cut(s)	207
GluI	GCNGC	2 cut(s)	190, 263
HhaI	GCGC	1 cut(s)	208
Hin1II	CATG	1 cut(s)	223
Hin6I	GCGC	1 cut(s)	206
HinP1I	GCGC	1 cut(s)	206
HphI	GGTGA	1 cut(s)	83
Hpy188III	TCNNGA	1 cut(s)	37
HpyAV	CCTTC	1 cut(s)	82
HpyCH4III	ACNGT	3 cut(s)	31, 158, 237
HpyCH4V	TGCA	4 cut(s)	4, 146, 240, 265
HpyF10VI	GCNNNNNNNGC	1 cut(s)	214
Hsp92II	CATG	1 cut(s)	223
HspAI	GCGC	1 cut(s)	206
Kzo9I	GATC	1 cut(s)	80
LmnI	GCTCC	1 cut(s)	243
LpnPI	CCDG	6 cut(s)	54, 87, 114, 123, 226, 251
Lsp1109I	GCAGC	1 cut(s)	249
MalI	GATC	1 cut(s)	82
MboI	GATC	1 cut(s)	80
MboII	GAAGA	4 cut(s)	52, 55, 68, 106
MhlI	GDGCHC	2 cut(s)	219, 248
MluCI	AATT	2 cut(s)	165, 178
MnlI	CCTC	1 cut(s)	23
MseI	TTAA	2 cut(s)	26, 164
MspR9I	CCNGG	1 cut(s)	102
MvaI	CCWGG	1 cut(s)	102
MwoI	GCNNNNNNNGC	1 cut(s)	214
NdeII	GATC	1 cut(s)	80
NlaIII	CATG	1 cut(s)	223
PkrI	GCNGC	2 cut(s)	191, 264
PshBI	ATTAAT	1 cut(s)	164
PsiI	TTATAA	1 cut(s)	171
Psp124BI	GAGCTC	1 cut(s)	248
Psp6I	CCWGG	1 cut(s)	100
PspGI	CCWGG	1 cut(s)	100
PspPI	GGNCC	1 cut(s)	228
PstI	CTGCAG	1 cut(s)	267
SacI	GAGCTC	1 cut(s)	248
SaqAI	TTAA	2 cut(s)	26, 164
SatI	GCNGC	2 cut(s)	190, 263
Sau3AI	GATC	1 cut(s)	80
Sau96I	GGNCC	1 cut(s)	228
ScrFI	CCNGG	1 cut(s)	102
SduI	GDGCHC	2 cut(s)	219, 248
SetI	ASST	2 cut(s)	70, 248
SfcI	CTRYAG	1 cut(s)	263
SinI	GGWCC	1 cut(s)	228
Sse9I	AATT	2 cut(s)	165, 178
SsiI	CCGC	1 cut(s)	189
SspI	AATATT	1 cut(s)	272
SstI	GAGCTC	1 cut(s)	248
StyD4I	CCNGG	1 cut(s)	100
TaaI	ACNGT	3 cut(s)	31, 158, 237
TasI	AATT	2 cut(s)	165, 178
TauI	GCSGC	1 cut(s)	192
Tru1I	TTAA	2 cut(s)	26, 164
Tru9I	TTAA	2 cut(s)	26, 164
TscAI	CASTG	2 cut(s)	142, 242
TseI	GCWGC	1 cut(s)	262
TspRI	CASTG	2 cut(s)	142, 242
VpaK11BI	GGWCC	1 cut(s)	228
VspI	ATTAAT	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.