plant mutator transposase zinc finger
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g35253 FvH4_3g24442 |
| prunus_persica | Prupe.1G325400_v2.0.a1 Prupe.1G325400_v2.0.a1 Prupe.1G325400_v2.0.a1 Prupe.8G117800_v2.0.a1 Prupe.8G171700_v2.0.a1 Prupe.8G171700_v2.0.a1 |
| pyrus_communis | pycom14g07550 |
| rosa_laevigata | RLG00000007937 RLG00000008445 |
| rosa_roxburghii | Rroxscaffold_5G00340370 Rroxscaffold_5G00355030 Rroxscaffold_7G00179610 |
| rosa_rugosa | Rorug05G0209100 |
| rosa_samantha | Rh1CG100700 Rh2AG197600 Rh5AG293600 Rh5BG301600 Rh5DG310800 Rh5DG360400 Rh7CG227000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AgsI | TTSAA | 1 cut(s) | 65 |
| AluBI | AGCT | 1 cut(s) | 139 |
| AluI | AGCT | 1 cut(s) | 139 |
| ApeKI | GCWGC | 1 cut(s) | 171 |
| BbvI | GCAGC | 1 cut(s) | 158 |
| BfaI | CTAG | 1 cut(s) | 12 |
| BisI | GCNGC | 1 cut(s) | 172 |
| BlsI | GCNGC | 1 cut(s) | 173 |
| BseGI | GGATG | 2 cut(s) | 160, 192 |
| BseXI | GCAGC | 1 cut(s) | 158 |
| Bst4CI | ACNGT | 3 cut(s) | 46, 71, 124 |
| Bst6I | CTCTTC | 1 cut(s) | 156 |
| BstF5I | GGATG | 2 cut(s) | 160, 192 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 17 |
| BstV1I | GCAGC | 1 cut(s) | 158 |
| BtsCI | GGATG | 2 cut(s) | 160, 192 |
| CviJI | RGCY | 1 cut(s) | 139 |
| CviKI_1 | RGCY | 1 cut(s) | 139 |
| Eam1104I | CTCTTC | 1 cut(s) | 156 |
| EarI | CTCTTC | 1 cut(s) | 156 |
| Eco32I | GATATC | 1 cut(s) | 85 |
| EcoRV | GATATC | 1 cut(s) | 85 |
| FaiI | YATR | 5 cut(s) | 78, 98, 100, 145, 184 |
| Fnu4HI | GCNGC | 1 cut(s) | 172 |
| FokI | GGATG | 1 cut(s) | 147 |
| Fsp4HI | GCNGC | 1 cut(s) | 172 |
| FspBI | CTAG | 1 cut(s) | 12 |
| FspEI | CC | 9 cut(s) | 7, 91, 111, 112, 163, 168, 169, 169, 177 |
| GluI | GCNGC | 1 cut(s) | 172 |
| Hpy188I | TCNGA | 1 cut(s) | 180 |
| HpyCH4III | ACNGT | 3 cut(s) | 46, 71, 124 |
| HpyCH4V | TGCA | 4 cut(s) | 38, 80, 174, 192 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 17 |
| Lsp1109I | GCAGC | 1 cut(s) | 158 |
| MaeI | CTAG | 1 cut(s) | 12 |
| MboII | GAAGA | 1 cut(s) | 143 |
| MluCI | AATT | 1 cut(s) | 39 |
| MseI | TTAA | 2 cut(s) | 104, 111 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 17 |
| PkrI | GCNGC | 1 cut(s) | 173 |
| SaqAI | TTAA | 2 cut(s) | 104, 111 |
| SatI | GCNGC | 1 cut(s) | 172 |
| SetI | ASST | 3 cut(s) | 26, 110, 141 |
| SgeI | CNNG | 5 cut(s) | 24, 33, 47, 148, 180 |
| Sse9I | AATT | 1 cut(s) | 39 |
| SspMI | CTAG | 1 cut(s) | 12 |
| TaaI | ACNGT | 3 cut(s) | 46, 71, 124 |
| TaqI | TCGA | 1 cut(s) | 135 |
| TasI | AATT | 1 cut(s) | 39 |
| Tru1I | TTAA | 2 cut(s) | 104, 111 |
| Tru9I | TTAA | 2 cut(s) | 104, 111 |
| TseI | GCWGC | 1 cut(s) | 171 |
| XspI | CTAG | 1 cut(s) | 12 |