Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0005519

Physical Location & Seq

Genomic Coordinates Reverse (-)

10392583 .. 10397685

Gene Structure 5103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGTATCACGCCAAGAAGTTCTCGACGGCGAGCTTGGTCCCGCACAAACCCCAGAGCTCGGAAGAGCTTGCGATCGTCGGGGCTGTCAGCGGCGGTTCCTCCGCCAAAAGTCCAACGCCTTCTGGCGGGGGAAGCGGGAAGCAGCGGCTCCGCTGGACTTCAGATCTCCACGACCGCTTCGTAGATGCCATTACTCAGCTTGGCGGACCAGATAGGGCAACACCTAAAGGTGTTCTGAGAGTGATGGGTGTTCCCGGACTAACTATTTATCATGTGAAAAGCCATTTACAGAAGTATCGACTTGCAAAGTACCTGCCAGAGTCTCCAGCTGATGGTTCTAAGGACGAGAAGAAGGGTTCTGGAGACAGCCTCTCTTGTTCAGATTCTTCTCCCGGAGTGCAAATTAATGAGGCATTGAGGATGCAGATGGAAGTTCAGAAGCGTCTTCATGAACAGCTTGAGGTTCAAAGACAGTTGCAAATGAGAATAGAAGCTCAGGGCAAATACTTGCAGAAGATCATTGAGGAGCAGCAAAAGCTTGGTGGTGCACTCAAAGCGTCAGATGCGTTACCATCAGCTGAGGATAAGCAGAAGCCAGCTCAGTTTGAGACAACGGGAGATGCATTGGCCACACCCTCATCTCCCCATAAGAAACAAAGGGTGGATGACCCGTTGCCTGACAGTTACGCCACATCTAATCTGCCTCTAAAGGCTGACCAGAAGAACGAATTTGTGGGTCAGTGGGATCGAGACACTGTATGGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

256

Amino Acids

27.91

Weight (kDa)

8.98

Isoelectric Point (pI)

53.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	49 - 100	8.8e-08	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	133 - 179	1.4e-24	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005519)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29370 FvH4_1g29370 FvH4_1g29370 FvH4_1g29370
malus_domestica	MD12G1111000.v1.1 MD14G1091900.v1.1
prunus_persica	Prupe.7G023300_v2.0.a1 Prupe.7G023300_v2.0.a1 Prupe.7G023300_v2.0.a1 Prupe.7G023300_v2.0.a1 Prupe.7G023300_v2.0.a1 Prupe.7G023300_v2.0.a1 Prupe.7G023300_v2.0.a1 Prupe.7G023300_v2.0.a1
pyrus_communis	pycom12g09310 pycom14g08990
rosa_chinensis	RchiOBHm_Chr3g0495021
rosa_laevigata	RLG00000022655
rosa_multiflora	Rmu_ssc0000058.1_g000002 Rmu_ssc0000058.1_g000009
rosa_roxburghii	Rroxscaffold_6G00390840
rosa_rugosa	Rorug03G0269100 Rorug03G0269200
rosa_samantha	Rh3AG318300 Rh3BG353300 Rh3BG353400 Rh3CG350200 Rh3DG352700
rosa_wichuraiana	Rw3G027750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	321
AccB7I	CCANNNNNTGG	1 cut(s)	332
AclWI	GGATC	1 cut(s)	753
AcoI	YGGCCR	1 cut(s)	627
AcsI	RAATTY	1 cut(s)	728
AcuI	CTGAAG	1 cut(s)	144
AfaI	GTAC	1 cut(s)	311
AfiI	CCNNNNNNNGG	3 cut(s)	58, 125, 332
AgsI	TTSAA	1 cut(s)	467
Alw21I	GWGCWC	2 cut(s)	59, 550
Alw26I	GTCTC	4 cut(s)	327, 357, 602, 744
Alw44I	GTGCAC	1 cut(s)	546
AlwI	GGATC	1 cut(s)	753
AoxI	GGCC	1 cut(s)	627
ApaLI	GTGCAC	1 cut(s)	546
ApeKI	GCWGC	2 cut(s)	142, 529
ApoI	RAATTY	1 cut(s)	728
AseI	ATTAAT	1 cut(s)	405
AspS9I	GGNCC	2 cut(s)	37, 206
AsuC2I	CCSGG	2 cut(s)	255, 393
AvaII	GGWCC	2 cut(s)	37, 206
BaeGI	GKGCMC	1 cut(s)	550
BaeI	ACNNNNGTAYC	2 cut(s)	278, 311
BalI	TGGCCA	1 cut(s)	629
BanII	GRGCYC	1 cut(s)	59
BbsI	GAAGAC	1 cut(s)	437
Bbv12I	GWGCWC	2 cut(s)	59, 550
BbvCI	CCTCAGC	1 cut(s)	579
BbvI	GCAGC	2 cut(s)	154, 541
BccI	CCATC	4 cut(s)	238, 326, 421, 580
BceAI	ACGGC	1 cut(s)	42
BcnI	CCSGG	2 cut(s)	255, 393
BcoDI	GTCTC	4 cut(s)	327, 357, 602, 744
BfuAI	ACCTGC	1 cut(s)	321
BglII	AGATCT	1 cut(s)	163
BisI	GCNGC	4 cut(s)	91, 143, 146, 530
BlsI	GCNGC	4 cut(s)	92, 144, 147, 531
Bme1390I	CCNGG	2 cut(s)	255, 393
Bme18I	GGWCC	2 cut(s)	37, 206
BmgT120I	GGNCC	2 cut(s)	37, 206
BmiI	GGNNCC	3 cut(s)	39, 97, 149
BmrFI	CCNGG	2 cut(s)	255, 393
BmsI	GCATC	4 cut(s)	175, 411, 553, 610
BpiI	GAAGAC	1 cut(s)	437
BplI	GAGNNNNNCTC	2 cut(s)	354, 386
BpmI	CTGGAG	2 cut(s)	309, 381
Bpu10I	CCTNAGC	2 cut(s)	495, 579
BpuEI	CTTGAG	1 cut(s)	479
BpuMI	CCSGG	2 cut(s)	255, 393
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 125, 332
BseGI	GGATG	2 cut(s)	426, 670
BseLI	CCNNNNNNNGG	3 cut(s)	58, 125, 332
BseMII	CTCAG	5 cut(s)	209, 227, 509, 570, 614
BseRI	GAGGAG	1 cut(s)	539
BseSI	GKGCMC	1 cut(s)	550
BseXI	GCAGC	2 cut(s)	154, 541
Bsh1285I	CGRYCG	2 cut(s)	75, 175
BshFI	GGCC	1 cut(s)	629
BsiEI	CGRYCG	2 cut(s)	75, 175
BsiHKAI	GWGCWC	2 cut(s)	59, 550
BsiSI	CCGG	2 cut(s)	255, 393
BslFI	GGGAC	1 cut(s)	23
BslI	CCNNNNNNNGG	3 cut(s)	58, 125, 332
BsmAI	GTCTC	4 cut(s)	327, 357, 602, 744
BsmFI	GGGAC	1 cut(s)	23
BsnI	GGCC	1 cut(s)	629
Bsp1286I	GDGCHC	2 cut(s)	59, 550
Bsp143I	GATC	4 cut(s)	72, 163, 516, 745
BspANI	GGCC	1 cut(s)	629
BspCNI	CTCAG	5 cut(s)	208, 228, 508, 571, 613
BspHI	TCATGA	1 cut(s)	448
BspLI	GGNNCC	3 cut(s)	39, 97, 149
BspMI	ACCTGC	1 cut(s)	321
BspPI	GGATC	1 cut(s)	753
BspQI	GCTCTTC	1 cut(s)	57
BssMI	GATC	4 cut(s)	72, 163, 516, 745
Bst4CI	ACNGT	3 cut(s)	474, 683, 757
Bst6I	CTCTTC	1 cut(s)	57
BstC8I	GCNNGC	3 cut(s)	31, 69, 597
BstDEI	CTNAG	6 cut(s)	195, 236, 339, 495, 579, 600
BstF5I	GGATG	2 cut(s)	426, 670
BstKTI	GATC	4 cut(s)	75, 166, 519, 748
BstMAI	GTCTC	4 cut(s)	327, 357, 602, 744
BstMBI	GATC	4 cut(s)	72, 163, 516, 745
BstMCI	CGRYCG	2 cut(s)	75, 175
BstMWI	GCNNNNNNNGC	4 cut(s)	132, 535, 554, 563
BstSCI	CCNGG	2 cut(s)	253, 391
BstSLI	GKGCMC	1 cut(s)	550
BstV1I	GCAGC	2 cut(s)	154, 541
BstV2I	GAAGAC	1 cut(s)	437
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
BsuRI	GGCC	1 cut(s)	629
BtsCI	GGATG	2 cut(s)	426, 670
BtsIMutI	CAGTG	2 cut(s)	746, 753
BveI	ACCTGC	1 cut(s)	321
Cac8I	GCNNGC	3 cut(s)	31, 69, 597
CciI	TCATGA	1 cut(s)	448
Cfr13I	GGNCC	2 cut(s)	37, 206
CseI	GACGC	2 cut(s)	431, 546
Csp6I	GTAC	1 cut(s)	310
CviAII	CATG	2 cut(s)	272, 449
CviQI	GTAC	1 cut(s)	310
DdeI	CTNAG	6 cut(s)	195, 236, 339, 495, 579, 600
DpnI	GATC	4 cut(s)	74, 165, 518, 747
DpnII	GATC	4 cut(s)	72, 163, 516, 745
EaeI	YGGCCR	1 cut(s)	627
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
EciI	GGCGGA	2 cut(s)	91, 219
Ecl136II	GAGCTC	1 cut(s)	57
Eco24I	GRGCYC	1 cut(s)	59
Eco47I	GGWCC	2 cut(s)	37, 206
Eco53kI	GAGCTC	1 cut(s)	57
Eco57I	CTGAAG	1 cut(s)	144
EcoICRI	GAGCTC	1 cut(s)	57
EcoT22I	ATGCAT	1 cut(s)	625
EcoT38I	GRGCYC	1 cut(s)	59
FaeI	CATG	2 cut(s)	275, 452
FaiI	YATR	4 cut(s)	273, 450, 648, 760
FaqI	GGGAC	1 cut(s)	23
FatI	CATG	2 cut(s)	271, 448
FauI	CCCGC	3 cut(s)	48, 119, 128
Fnu4HI	GCNGC	4 cut(s)	91, 143, 146, 530
FokI	GGATG	2 cut(s)	433, 677
FriOI	GRGCYC	1 cut(s)	59
Fsp4HI	GCNGC	4 cut(s)	91, 143, 146, 530
GluI	GCNGC	4 cut(s)	91, 143, 146, 530
GsuI	CTGGAG	2 cut(s)	309, 381
HaeIII	GGCC	1 cut(s)	629
HapII	CCGG	2 cut(s)	255, 393
HgaI	GACGC	2 cut(s)	431, 546
Hin1II	CATG	2 cut(s)	275, 452
HindIII	AAGCTT	1 cut(s)	536
HinfI	GANTC	2 cut(s)	320, 383
HpaII	CCGG	2 cut(s)	255, 393
Hpy166II	GTNNAC	1 cut(s)	548
Hpy188I	TCNGA	6 cut(s)	61, 163, 237, 382, 438, 562
Hpy188III	TCNNGA	4 cut(s)	22, 360, 449, 749
Hpy8I	GTNNAC	1 cut(s)	548
Hpy99I	CGWCG	2 cut(s)	28, 80
HpyAV	CCTTC	2 cut(s)	129, 346
HpyCH4III	ACNGT	3 cut(s)	474, 683, 757
HpyCH4V	TGCA	7 cut(s)	305, 400, 424, 478, 511, 548, 623
HpyF10VI	GCNNNNNNNGC	4 cut(s)	132, 535, 554, 563
HpyF3I	CTNAG	6 cut(s)	195, 236, 339, 495, 579, 600
Hsp92II	CATG	2 cut(s)	275, 452
Kzo9I	GATC	4 cut(s)	72, 163, 516, 745
LguI	GCTCTTC	1 cut(s)	57
LmnI	GCTCC	2 cut(s)	153, 526
Lsp1109I	GCAGC	2 cut(s)	154, 541
LweI	GCATC	4 cut(s)	175, 411, 553, 610
MaeIII	GTNAC	2 cut(s)	567, 683
MalI	GATC	4 cut(s)	74, 165, 518, 747
MboI	GATC	4 cut(s)	72, 163, 516, 745
MboII	GAAGA	6 cut(s)	74, 361, 378, 437, 526, 733
MflI	RGATCY	1 cut(s)	163
MhlI	GDGCHC	2 cut(s)	59, 550
MlsI	TGGCCA	1 cut(s)	629
MluCI	AATT	2 cut(s)	402, 728
MluNI	TGGCCA	1 cut(s)	629
MlyI	GAGTC	1 cut(s)	329
MmeI	TCCRAC	1 cut(s)	137
MnlI	CCTC	9 cut(s)	109, 380, 403, 411, 454, 517, 574, 646, 714
Mox20I	TGGCCA	1 cut(s)	629
Mph1103I	ATGCAT	1 cut(s)	625
MscI	TGGCCA	1 cut(s)	629
MseI	TTAA	1 cut(s)	405
Msp20I	TGGCCA	1 cut(s)	629
MspA1I	CMGCKG	5 cut(s)	90, 145, 153, 329, 578
MspI	CCGG	2 cut(s)	255, 393
MspR9I	CCNGG	2 cut(s)	255, 393
MwoI	GCNNNNNNNGC	4 cut(s)	132, 535, 554, 563
NciI	CCSGG	2 cut(s)	255, 393
NdeII	GATC	4 cut(s)	72, 163, 516, 745
NlaIII	CATG	2 cut(s)	275, 452
NlaIV	GGNNCC	3 cut(s)	39, 97, 149
NsiI	ATGCAT	1 cut(s)	625
PagI	TCATGA	1 cut(s)	448
PciSI	GCTCTTC	1 cut(s)	57
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PfeI	GAWTC	1 cut(s)	383
PflMI	CCANNNNNTGG	1 cut(s)	332
PfoI	TCCNGGA	2 cut(s)	253, 391
PkrI	GCNGC	4 cut(s)	92, 144, 147, 531
Ple19I	CGATCG	1 cut(s)	75
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
PshBI	ATTAAT	1 cut(s)	405
Psp124BI	GAGCTC	1 cut(s)	59
PspN4I	GGNNCC	3 cut(s)	39, 97, 149
PspPI	GGNCC	2 cut(s)	37, 206
PsuI	RGATCY	1 cut(s)	163
PvuI	CGATCG	1 cut(s)	75
PvuII	CAGCTG	2 cut(s)	329, 578
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
SacI	GAGCTC	1 cut(s)	59
SapI	GCTCTTC	1 cut(s)	57
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	4 cut(s)	91, 143, 146, 530
Sau3AI	GATC	4 cut(s)	72, 163, 516, 745
Sau96I	GGNCC	2 cut(s)	37, 206
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	2 cut(s)	255, 393
SduI	GDGCHC	2 cut(s)	59, 550
SfaNI	GCATC	4 cut(s)	175, 411, 553, 610
SinI	GGWCC	2 cut(s)	37, 206
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
Sse9I	AATT	2 cut(s)	402, 728
SstI	GAGCTC	1 cut(s)	59
StyD4I	CCNGG	2 cut(s)	253, 391
TaaI	ACNGT	3 cut(s)	474, 683, 757
TaqI	TCGA	3 cut(s)	23, 298, 748
TasI	AATT	2 cut(s)	402, 728
TauI	GCSGC	2 cut(s)	93, 148
TfiI	GAWTC	1 cut(s)	383
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TscAI	CASTG	2 cut(s)	746, 760
TseI	GCWGC	2 cut(s)	142, 529
TspDTI	ATGAA	2 cut(s)	437, 465
TspRI	CASTG	2 cut(s)	746, 760
Van91I	CCANNNNNTGG	1 cut(s)	332
VneI	GTGCAC	1 cut(s)	546
VpaK11BI	GGWCC	2 cut(s)	37, 206
VspI	ATTAAT	1 cut(s)	405
XapI	RAATTY	1 cut(s)	728
Zsp2I	ATGCAT	1 cut(s)	625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.