pycom14g17180

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0006512
Physical Location & Seq
Reverse (-)
19235069 .. 19235975
907 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 516 bp
ATGACTGGGCGGCCAAACAAAGAAGCAAGGGATGCTGGTGAAGTTTCAATGAAAGATCAAAGAGCACAGGAGAGTGCTTTTCCATCTAGGTACCCGAATCGTGCATCCTCTTCAAGACCTTCGACTCCTGCAAATGGATACCAAACCCAAAAGGGAAGTTCAGGCAGACGTAATGCTGCGGACACAAAAGCAGATGCTTGGGAGAGAGCTCAGATGAAAAAGATTCAGAAGCGGTATGAGAAAGTGAAGGCTACAATTGTTGCTTGGGAAAATGAGAAGAAAACGAAAGCAAAAGCTAAGATGGAGAGGAGAAAGAGTGAAATTGAGCAGAGAAGAGCAAGAAACATGCAGCATTACCAAATTAAGCAAGCAAGAATTGACCAGATAGCAGGAGGAGCAAGGGCACAAGTGGAAGAGAAACGAAGAAATGAAGAGTCGAAAGTGAAAGAAAAGGTGAAAAGGATTAGGTCAACAGGCAAGGCTCCTACTACATGTTTCTGCTTCACTTGTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

172

Amino Acids

19.67

Weight (kDa)

10.35

Isoelectric Point (pI)

56.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 60 - 163 2.1e-29 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 90
AccB1I GGYRCC 1 cut(s) 90
AciI CCGC 3 cut(s) 10, 179, 232
AcoI YGGCCR 1 cut(s) 11
AfaI GTAC 1 cut(s) 92
AfiI CCNNNNNNNGG 1 cut(s) 134
AflIII ACRYGT 1 cut(s) 491
AgsI TTSAA 2 cut(s) 48, 114
AluBI AGCT 2 cut(s) 209, 296
AluI AGCT 2 cut(s) 209, 296
Alw21I GWGCWC 2 cut(s) 67, 211
AoxI GGCC 1 cut(s) 11
ApeKI GCWGC 2 cut(s) 176, 349
Asp718I GGTACC 1 cut(s) 90
AsuHPI GGTGA 2 cut(s) 50, 466
BaeGI GKGCMC 1 cut(s) 406
BanI GGYRCC 1 cut(s) 90
BanII GRGCYC 1 cut(s) 211
Bbv12I GWGCWC 2 cut(s) 67, 211
BbvI GCAGC 2 cut(s) 163, 361
BccI CCATC 2 cut(s) 91, 295
BciVI GTATCC 1 cut(s) 131
BfaI CTAG 2 cut(s) 87, 514
BfuI GTATCC 1 cut(s) 131
BisI GCNGC 3 cut(s) 11, 177, 350
BlsI GCNGC 3 cut(s) 12, 178, 351
BmiI GGNNCC 2 cut(s) 92, 483
BmrI ACTGGG 1 cut(s) 15
BmsI GCATC 3 cut(s) 22, 113, 184
BmuI ACTGGG 1 cut(s) 15
BsaXI ACNNNNNCTCC 2 cut(s) 301, 331
Bsc4I CCNNNNNNNGG 1 cut(s) 134
Bse1I ACTGG 1 cut(s) 10
BseGI GGATG 2 cut(s) 37, 104
BseLI CCNNNNNNNGG 1 cut(s) 134
BseMII CTCAG 1 cut(s) 224
BseNI ACTGG 1 cut(s) 10
BseRI GAGGAG 2 cut(s) 322, 408
BseSI GKGCMC 1 cut(s) 406
BseXI GCAGC 2 cut(s) 163, 361
BshFI GGCC 1 cut(s) 13
BshNI GGYRCC 1 cut(s) 90
BsiHKAI GWGCWC 2 cut(s) 67, 211
BslI CCNNNNNNNGG 1 cut(s) 134
BsnI GGCC 1 cut(s) 13
Bsp1286I GDGCHC 3 cut(s) 67, 211, 406
Bsp143I GATC 1 cut(s) 55
BspACI CCGC 3 cut(s) 10, 179, 232
BspANI GGCC 1 cut(s) 13
BspCNI CTCAG 1 cut(s) 223
BspLI GGNNCC 2 cut(s) 92, 483
BspQI GCTCTTC 1 cut(s) 328
BspT107I GGYRCC 1 cut(s) 90
BsrI ACTGG 1 cut(s) 10
BssMI GATC 1 cut(s) 55
Bst6I CTCTTC 4 cut(s) 115, 328, 408, 426
BstAPI GCANNNNNTGC 1 cut(s) 32
BstC8I GCNNGC 1 cut(s) 369
BstDEI CTNAG 2 cut(s) 210, 297
BstF5I GGATG 2 cut(s) 37, 104
BstKTI GATC 1 cut(s) 58
BstMBI GATC 1 cut(s) 55
BstMWI GCNNNNNNNGC 2 cut(s) 32, 395
BstNSI RCATGY 2 cut(s) 349, 495
BstSLI GKGCMC 1 cut(s) 406
BstV1I GCAGC 2 cut(s) 163, 361
BsuI GTATCC 1 cut(s) 131
BsuRI GGCC 1 cut(s) 13
BtsCI GGATG 2 cut(s) 37, 104
Cac8I GCNNGC 1 cut(s) 369
Csp6I GTAC 1 cut(s) 91
CviAII CATG 2 cut(s) 346, 492
CviJI RGCY 5 cut(s) 13, 209, 251, 296, 482
CviKI_1 RGCY 5 cut(s) 13, 209, 251, 296, 482
CviQI GTAC 1 cut(s) 91
DdeI CTNAG 2 cut(s) 210, 297
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
EaeI YGGCCR 1 cut(s) 11
Eam1104I CTCTTC 4 cut(s) 115, 328, 408, 426
EarI CTCTTC 4 cut(s) 115, 328, 408, 426
Ecl136II GAGCTC 1 cut(s) 209
Eco24I GRGCYC 1 cut(s) 211
Eco53kI GAGCTC 1 cut(s) 209
EcoICRI GAGCTC 1 cut(s) 209
EcoT38I GRGCYC 1 cut(s) 211
FaeI CATG 2 cut(s) 349, 495
FaiI YATR 3 cut(s) 237, 347, 493
FatI CATG 2 cut(s) 345, 491
Fnu4HI GCNGC 3 cut(s) 11, 177, 350
FokI GGATG 2 cut(s) 44, 91
FriOI GRGCYC 1 cut(s) 211
Fsp4HI GCNGC 3 cut(s) 11, 177, 350
FspBI CTAG 2 cut(s) 87, 514
GluI GCNGC 3 cut(s) 11, 177, 350
HaeIII GGCC 1 cut(s) 13
Hin1II CATG 2 cut(s) 349, 495
HincII GTYRAC 1 cut(s) 471
HindII GTYRAC 1 cut(s) 471
HinfI GANTC 4 cut(s) 97, 124, 223, 434
HphI GGTGA 2 cut(s) 50, 466
Hpy166II GTNNAC 1 cut(s) 471
Hpy188I TCNGA 2 cut(s) 213, 228
Hpy188III TCNNGA 1 cut(s) 114
Hpy8I GTNNAC 1 cut(s) 471
HpyAV CCTTC 2 cut(s) 129, 241
HpyCH4IV ACGT 1 cut(s) 169
HpyCH4V TGCA 3 cut(s) 104, 131, 349
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 395
HpyF3I CTNAG 2 cut(s) 210, 297
HpySE526I ACGT 1 cut(s) 169
Hsp92II CATG 2 cut(s) 349, 495
KpnI GGTACC 1 cut(s) 94
Kzo9I GATC 1 cut(s) 55
LguI GCTCTTC 1 cut(s) 328
LmnI GCTCC 2 cut(s) 395, 487
LpnPI CCDG 7 cut(s) 21, 53, 141, 147, 375, 395, 459
Lsp1109I GCAGC 2 cut(s) 163, 361
LweI GCATC 3 cut(s) 22, 113, 184
MaeI CTAG 2 cut(s) 87, 514
MaeII ACGT 1 cut(s) 169
MaeIII GTNAC 1 cut(s) 509
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MboII GAAGA 6 cut(s) 102, 289, 345, 425, 435, 443
MfeI CAATTG 1 cut(s) 255
MhlI GDGCHC 3 cut(s) 67, 211, 406
MluCI AATT 4 cut(s) 255, 321, 360, 375
MlyI GAGTC 2 cut(s) 118, 443
MnlI CCTC 3 cut(s) 118, 300, 386
MseI TTAA 1 cut(s) 363
MunI CAATTG 1 cut(s) 255
MwoI GCNNNNNNNGC 2 cut(s) 32, 395
NdeII GATC 1 cut(s) 55
NlaIII CATG 2 cut(s) 349, 495
NlaIV GGNNCC 2 cut(s) 92, 483
NspI RCATGY 2 cut(s) 349, 495
PciI ACATGT 1 cut(s) 491
PciSI GCTCTTC 1 cut(s) 328
PfeI GAWTC 2 cut(s) 97, 223
PkrI GCNGC 3 cut(s) 12, 178, 351
PleI GAGTC 2 cut(s) 118, 442
PpsI GAGTC 2 cut(s) 118, 442
PscI ACATGT 1 cut(s) 491
Psp124BI GAGCTC 1 cut(s) 211
PspN4I GGNNCC 2 cut(s) 92, 483
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
SacI GAGCTC 1 cut(s) 211
SapI GCTCTTC 1 cut(s) 328
SaqAI TTAA 1 cut(s) 363
SatI GCNGC 3 cut(s) 11, 177, 350
Sau3AI GATC 1 cut(s) 55
SchI GAGTC 2 cut(s) 118, 443
SduI GDGCHC 3 cut(s) 67, 211, 406
SetI ASST 7 cut(s) 92, 121, 172, 211, 298, 456, 470
SfaNI GCATC 3 cut(s) 22, 113, 184
Sse9I AATT 4 cut(s) 255, 321, 360, 375
SsiI CCGC 3 cut(s) 10, 179, 232
SspMI CTAG 2 cut(s) 87, 514
SstI GAGCTC 1 cut(s) 211
TaiI ACGT 1 cut(s) 172
TaqI TCGA 2 cut(s) 122, 437
TasI AATT 4 cut(s) 255, 321, 360, 375
TauI GCSGC 1 cut(s) 13
TfiI GAWTC 2 cut(s) 97, 223
Tru1I TTAA 1 cut(s) 363
Tru9I TTAA 1 cut(s) 363
TseI GCWGC 2 cut(s) 176, 349
TspDTI ATGAA 3 cut(s) 65, 230, 444
XceI RCATGY 2 cut(s) 349, 495
XspI CTAG 2 cut(s) 87, 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.