pycom14g18290

Belongs to the eIF-2B alpha beta delta subunits family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
Physical Location & Seq
Reverse (-)
19976683 .. 19979182
2500 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1395 bp
ATGGACGCGCGTCGCGTCTCCCGTACCGTGATCGACCCCAAGGTCCGCCAAGTCGGGTTCTTCACCCCCGTCGCCGAAGCCCCACCGTGTCGGACCCAGTCCGGCCCGGCAATCACAGTCCCTTCTCCTCTCTCCGAATCTCCGGCCATCAACTCACTCTCTCCCGTCATGATCGATCAAAACATGCCCCCGTCGCGTCACCTTTCCGACACAGTCGTGATCCGTACGGCCGCCGTGCCGGTACCGGATTCGGCGTTGCGGCGCACGGAATCCGGCGACGTGCAGGTGGGCAGCTATAATCCCTCGGAGTCGTTGTTAGGGACCTCGCCGGTGTCAGCCTCGCCTTCGAGTCGCGTTGGGGATGGACTCGAGTTCTCCGATGAGTCCTCGGCCCGTTGGTATCGGCGGAGCGGCTCCGGAAAGATGGCTTCGAGCTTGCCCAGCGTAGGATTCGAATCCGCAGCATTGAAGACGGCTGCTGAAGTTCCTGAAAAGAGTGGAGAGGCGGTTGCGGAATCGCAGAAAAAACTTCTGGCAAATTCAAAACCTTTGACAGCCAAGACCACAAAAGCGGAAAGGCGTGCCTTGCAAGAGGCTCAACGTGCTGCAAAAGCCGCTGCTAGAGGTGAGGGGAAAAAACCTGCTGCTGTAACTGGGGGTGGCACTACTGGTAAGGCAGCTAAGTCTGCAAAGCAGTCTGTGCAAAAGAAGGATACTTCTCAAGTTGCGCCTTCGGTGGCTGCTTCTGATAGAAAGGGGGGTGATCGACCACCAGATAAGGAAAGGAAGAAAGATGTTCCTCCTCCACGTATGCAGTTTGATGATAAGAGCCGAGTGGAGAAGGCAAAAAGGCGTGCAGTGGTCCATCAAACAGAAGCTAAAAACAGAGTTGAATTGTTCCGGCATTTGCCTCAATATGAGCGAGGAACTCAGCTTCCTGATCTTGAATCAAAATTTTTCCAACTTGATCCAATGCATCCTGCCATTTATAAGGTTGGACTGAAGTATTTGGCTGGAGAAGTATCGGGGGGTAATGCTCGTTGTATTGCAATGCTCCAAGCATTTCAAGAAGCCATTAGAGACTACTCAACACCGCCAAATAAAGTTCTTGTCAGAGATTTAACTGCAAAACTCAGTAGTTATGTCTCATTTTTCACTGAATGCAGGCCACTTTCGATCAGCATGGGAAATGCAGTAAGGTTTCTGAAGAGTCGTATTGCCAAGCTCGCCTTAAATCTTTCCGAGTCTGATGCAAAATCTACACTTTGTTCAGAAATTGACCGTTTTATAAATGAAAAGATAATACTTGCTGATAAGGTGATAGTCGGGCATGCTTCTACAAAGGTTAGGGACGGAGATGTTCTTCTCACATACGGATCGATCATGTGTCGTTGA

Protein Analysis

465

Amino Acids

50.07

Weight (kDa)

9.78

Isoelectric Point (pI)

50.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IF-2B PF01008 340 - 459 2.2e-19 Initiation factor 2 subunit family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 990, 1289
AarI CACCTGC 1 cut(s) 274
AasI GACNNNNNNGTC 1 cut(s) 41
Acc36I ACCTGC 2 cut(s) 274, 649
Acc65I GGTACC 1 cut(s) 241
AccB1I GGYRCC 1 cut(s) 241
AccBSI CCGCTC 1 cut(s) 411
AccII CGCG 5 cut(s) 8, 10, 15, 196, 354
AccIII TCCGGA 1 cut(s) 416
AclWI GGATC 3 cut(s) 214, 962, 1384
AcoI YGGCCR 2 cut(s) 144, 228
AcsI RAATTY 2 cut(s) 538, 953
AcuI CTGAAG 3 cut(s) 501, 1022, 1226
AfaI GTAC 3 cut(s) 25, 226, 243
AfiI CCNNNNNNNGG 1 cut(s) 446
AgsI TTSAA 5 cut(s) 469, 543, 893, 947, 1067
AjiI CACGTC 1 cut(s) 280
AleI CACNNNNGTG 1 cut(s) 215
AloI GAACNNNNNNTCC 2 cut(s) 919, 951
AluBI AGCT 6 cut(s) 294, 435, 680, 878, 934, 1225
AluI AGCT 6 cut(s) 294, 435, 680, 878, 934, 1225
Alw26I GTCTC 3 cut(s) 22, 1074, 1150
AlwI GGATC 3 cut(s) 214, 962, 1384
Ama87I CYCGRG 1 cut(s) 368
Aor13HI TCCGGA 1 cut(s) 416
AoxI GGCC 5 cut(s) 103, 144, 228, 390, 1166
ApeKI GCWGC 8 cut(s) 291, 461, 476, 605, 617, 644, 677, 740
ApoI RAATTY 2 cut(s) 538, 953
Asp718I GGTACC 1 cut(s) 241
AspLEI GCGC 3 cut(s) 10, 264, 730
AspS9I GGNCC 6 cut(s) 43, 93, 104, 321, 391, 862
AsuC2I CCSGG 1 cut(s) 107
AsuHPI GGTGA 5 cut(s) 55, 191, 638, 773, 1330
AsuII TTCGAA 1 cut(s) 453
AvaI CYCGRG 1 cut(s) 368
AvaII GGWCC 4 cut(s) 43, 93, 321, 862
BanI GGYRCC 1 cut(s) 241
BbsI GAAGAC 1 cut(s) 476
BbvI GCAGC 8 cut(s) 303, 463, 473, 592, 604, 631, 689, 727
BccI CCATC 4 cut(s) 155, 356, 418, 873
BceAI ACGGC 3 cut(s) 218, 243, 489
BcgI CGANNNNNNTGC 2 cut(s) 1232, 1266
BciVI GTATCC 1 cut(s) 706
BcnI CCSGG 1 cut(s) 107
BcoDI GTCTC 3 cut(s) 22, 1074, 1150
BfaI CTAG 1 cut(s) 621
BfuAI ACCTGC 2 cut(s) 274, 649
BfuI GTATCC 1 cut(s) 706
Bme1390I CCNGG 1 cut(s) 107
Bme18I GGWCC 4 cut(s) 43, 93, 321, 862
BmeT110I CYCGRG 1 cut(s) 368
BmgBI CACGTC 1 cut(s) 280
BmgT120I GGNCC 6 cut(s) 43, 93, 104, 321, 391, 862
BmiI GGNNCC 4 cut(s) 95, 243, 322, 415
BmrFI CCNGG 1 cut(s) 107
BmrI ACTGGG 2 cut(s) 91, 663
BmsI GCATC 2 cut(s) 985, 1240
BmuI ACTGGG 2 cut(s) 91, 663
BoxI GACNNNNGTC 1 cut(s) 9
BpiI GAAGAC 1 cut(s) 476
BpmI CTGGAG 1 cut(s) 1035
Bpu14I TTCGAA 1 cut(s) 453
BpuEI CTTGAG 1 cut(s) 705
BpuMI CCSGG 1 cut(s) 107
Bsa29I ATCGAT 2 cut(s) 174, 1379
BsaAI YACGTR 1 cut(s) 809
BsaBI GATNNNNATC 1 cut(s) 454
BsaJI CCNNGG 3 cut(s) 39, 303, 387
BsaWI WCCGGW 2 cut(s) 244, 416
BsaXI ACNNNNNCTCC 4 cut(s) 299, 329, 492, 522
Bsc4I CCNNNNNNNGG 1 cut(s) 446
Bse118I RCCGGY 2 cut(s) 238, 328
Bse1I ACTGG 3 cut(s) 97, 658, 673
Bse3DI GCAATG 1 cut(s) 1056
Bse8I GATNNNNATC 1 cut(s) 454
BseAI TCCGGA 1 cut(s) 416
BseCI ATCGAT 2 cut(s) 174, 1379
BseDI CCNNGG 3 cut(s) 39, 303, 387
BseGI GGATG 2 cut(s) 367, 976
BseJI GATNNNNATC 1 cut(s) 454
BseLI CCNNNNNNNGG 1 cut(s) 446
BseMI GCAATG 1 cut(s) 1056
BseMII CTCAG 2 cut(s) 944, 1147
BseNI ACTGG 3 cut(s) 97, 658, 673
BseRI GAGGAG 2 cut(s) 117, 792
BseX3I CGGCCG 1 cut(s) 228
BseXI GCAGC 8 cut(s) 303, 463, 473, 592, 604, 631, 689, 727
BseYI CCCAGC 1 cut(s) 440
BsgI GTGCAG 2 cut(s) 302, 876
Bsh1236I CGCG 5 cut(s) 8, 10, 15, 196, 354
Bsh1285I CGRYCG 1 cut(s) 231
BshFI GGCC 5 cut(s) 105, 146, 230, 392, 1168
BshNI GGYRCC 1 cut(s) 241
BshVI ATCGAT 2 cut(s) 174, 1379
BsiEI CGRYCG 1 cut(s) 231
BsiHKCI CYCGRG 1 cut(s) 368
BsiSI CCGG 9 cut(s) 102, 107, 143, 239, 245, 273, 329, 417, 901
BsiWI CGTACG 1 cut(s) 224
BslFI GGGAC 3 cut(s) 104, 334, 1364
BslI CCNNNNNNNGG 1 cut(s) 446
BsmAI GTCTC 3 cut(s) 22, 1074, 1150
BsmBI CGTCTC 1 cut(s) 22
BsmFI GGGAC 3 cut(s) 104, 334, 1364
BsmI GAATGC 1 cut(s) 1166
BsnI GGCC 5 cut(s) 105, 146, 230, 392, 1168
BsoBI CYCGRG 1 cut(s) 368
Bsp119I TTCGAA 1 cut(s) 453
Bsp13I TCCGGA 1 cut(s) 416
BspANI GGCC 5 cut(s) 105, 146, 230, 392, 1168
BspCNI CTCAG 2 cut(s) 943, 1146
BspDI ATCGAT 2 cut(s) 174, 1379
BspEI TCCGGA 1 cut(s) 416
BspFNI CGCG 5 cut(s) 8, 10, 15, 196, 354
BspHI TCATGA 1 cut(s) 168
BspLI GGNNCC 4 cut(s) 95, 243, 322, 415
BspMI ACCTGC 2 cut(s) 274, 649
BspPI GGATC 3 cut(s) 214, 962, 1384
BspT104I TTCGAA 1 cut(s) 453
BspT107I GGYRCC 1 cut(s) 241
BsrBI CCGCTC 1 cut(s) 411
BsrDI GCAATG 1 cut(s) 1056
BsrFI RCCGGY 2 cut(s) 238, 328
BsrI ACTGG 3 cut(s) 97, 658, 673
BssAI RCCGGY 2 cut(s) 238, 328
BssECI CCNNGG 3 cut(s) 39, 303, 387
BssT1I CCWWGG 1 cut(s) 39
Bst4CI ACNGT 5 cut(s) 28, 87, 118, 214, 1283
Bst6I CTCTTC 1 cut(s) 1202
BstAPI GCANNNNNTGC 1 cut(s) 700
BstBAI YACGTR 1 cut(s) 809
BstBI TTCGAA 1 cut(s) 453
BstC8I GCNNGC 6 cut(s) 437, 582, 855, 1166, 1227, 1332
BstDEI CTNAG 3 cut(s) 681, 930, 1133
BstF5I GGATG 2 cut(s) 367, 976
BstFNI CGCG 5 cut(s) 8, 10, 15, 196, 354
BstHHI GCGC 3 cut(s) 10, 264, 730
BstMAI GTCTC 3 cut(s) 22, 1074, 1150
BstMCI CGRYCG 1 cut(s) 231
BstMWI GCNNNNNNNGC 9 cut(s) 193, 441, 586, 602, 611, 614, 686, 700, 1226
BstNSI RCATGY 2 cut(s) 187, 1334
BstPAI GACNNNNGTC 1 cut(s) 9
BstSCI CCNGG 1 cut(s) 105
BstUI CGCG 5 cut(s) 8, 10, 15, 196, 354
BstV1I GCAGC 8 cut(s) 303, 463, 473, 592, 604, 631, 689, 727
BstV2I GAAGAC 1 cut(s) 476
BstZI CGGCCG 1 cut(s) 228
Bsu15I ATCGAT 2 cut(s) 174, 1379
BsuI GTATCC 1 cut(s) 706
BsuRI GGCC 5 cut(s) 105, 146, 230, 392, 1168
BsuTUI ATCGAT 2 cut(s) 174, 1379
BtrI CACGTC 1 cut(s) 280
BtsCI GGATG 2 cut(s) 367, 976
BtsI GCAGTG 1 cut(s) 864
BtsIMutI CAGTG 2 cut(s) 864, 1155
BveI ACCTGC 2 cut(s) 274, 649
Cac8I GCNNGC 6 cut(s) 437, 582, 855, 1166, 1227, 1332
CciI TCATGA 1 cut(s) 168
CfoI GCGC 3 cut(s) 10, 264, 730
Cfr10I RCCGGY 2 cut(s) 238, 328
Cfr13I GGNCC 6 cut(s) 43, 93, 104, 321, 391, 862
ClaI ATCGAT 2 cut(s) 174, 1379
CseI GACGC 3 cut(s) 4, 14, 185
Csp6I GTAC 3 cut(s) 24, 225, 242
CviAII CATG 5 cut(s) 169, 184, 1183, 1331, 1384
CviQI GTAC 3 cut(s) 24, 225, 242
DdeI CTNAG 3 cut(s) 681, 930, 1133
DrdI GACNNNNNNGTC 1 cut(s) 41
DseDI GACNNNNNNGTC 1 cut(s) 41
EaeI YGGCCR 2 cut(s) 144, 228
EagI CGGCCG 1 cut(s) 228
Eam1104I CTCTTC 1 cut(s) 1202
EarI CTCTTC 1 cut(s) 1202
EciI GGCGGA 2 cut(s) 35, 421
EclXI CGGCCG 1 cut(s) 228
Eco130I CCWWGG 1 cut(s) 39
Eco47I GGWCC 4 cut(s) 43, 93, 321, 862
Eco52I CGGCCG 1 cut(s) 228
Eco57I CTGAAG 3 cut(s) 501, 1022, 1226
Eco88I CYCGRG 1 cut(s) 368
EcoO109I RGGNCCY 1 cut(s) 321
EcoT14I CCWWGG 1 cut(s) 39
EcoT22I ATGCAT 1 cut(s) 978
ErhI CCWWGG 1 cut(s) 39
Esp3I CGTCTC 1 cut(s) 22
FaeI CATG 5 cut(s) 172, 187, 1186, 1334, 1387
FalI AAGNNNNNCTT 2 cut(s) 1214, 1246
FaqI GGGAC 3 cut(s) 104, 334, 1364
FatI CATG 5 cut(s) 168, 183, 1182, 1330, 1383
FokI GGATG 2 cut(s) 374, 963
FspBI CTAG 1 cut(s) 621
GlaI GCGC 3 cut(s) 9, 263, 729
GsaI CCCAGC 1 cut(s) 444
GsuI CTGGAG 1 cut(s) 1035
HaeIII GGCC 5 cut(s) 105, 146, 230, 392, 1168
HapII CCGG 9 cut(s) 102, 107, 143, 239, 245, 273, 329, 417, 901
HgaI GACGC 3 cut(s) 4, 14, 185
HhaI GCGC 3 cut(s) 10, 264, 730
Hin1II CATG 5 cut(s) 172, 187, 1186, 1334, 1387
Hin6I GCGC 3 cut(s) 8, 262, 728
HinP1I GCGC 3 cut(s) 8, 262, 728
HpaII CCGG 9 cut(s) 102, 107, 143, 239, 245, 273, 329, 417, 901
HphI GGTGA 5 cut(s) 55, 191, 638, 773, 1330
Hpy188III TCNNGA 7 cut(s) 169, 217, 417, 488, 938, 944, 1067
Hpy99I CGWCG 4 cut(s) 15, 74, 196, 281
HpyAV CCTTC 5 cut(s) 132, 354, 703, 741, 835
HpyCH4III ACNGT 5 cut(s) 28, 87, 118, 214, 1283
HpyCH4IV ACGT 3 cut(s) 279, 601, 808
HpyF10VI GCNNNNNNNGC 9 cut(s) 193, 441, 586, 602, 611, 614, 686, 700, 1226
HpyF3I CTNAG 3 cut(s) 681, 930, 1133
HpySE526I ACGT 3 cut(s) 279, 601, 808
Hsp92II CATG 5 cut(s) 172, 187, 1186, 1334, 1387
HspAI GCGC 3 cut(s) 8, 262, 728
Kpn2I TCCGGA 1 cut(s) 416
KpnI GGTACC 1 cut(s) 245
LmnI GCTCC 3 cut(s) 408, 419, 1059
Lsp1109I GCAGC 8 cut(s) 303, 463, 473, 592, 604, 631, 689, 727
LweI GCATC 2 cut(s) 985, 1240
MaeI CTAG 1 cut(s) 621
MaeII ACGT 3 cut(s) 279, 601, 808
MaeIII GTNAC 2 cut(s) 197, 649
MbiI CCGCTC 1 cut(s) 411
MboII GAAGA 5 cut(s) 52, 481, 799, 1219, 1355
MluCI AATT 4 cut(s) 538, 893, 953, 1275
MlyI GAGTC 6 cut(s) 317, 358, 360, 392, 1219, 1253
MmeI TCCRAC 4 cut(s) 71, 231, 976, 985
Mph1103I ATGCAT 1 cut(s) 978
MroI TCCGGA 1 cut(s) 416
MseI TTAA 2 cut(s) 1121, 1232
MslI CAYNNNNRTG 1 cut(s) 215
MspA1I CMGCKG 1 cut(s) 617
MspI CCGG 9 cut(s) 102, 107, 143, 239, 245, 273, 329, 417, 901
MspR9I CCNGG 1 cut(s) 107
Mva1269I GAATGC 1 cut(s) 1166
MvnI CGCG 5 cut(s) 8, 10, 15, 196, 354
MwoI GCNNNNNNNGC 9 cut(s) 193, 441, 586, 602, 611, 614, 686, 700, 1226
NciI CCSGG 1 cut(s) 107
NlaIII CATG 5 cut(s) 172, 187, 1186, 1334, 1387
NlaIV GGNNCC 4 cut(s) 95, 243, 322, 415
NmeAIII GCCGAG 2 cut(s) 368, 857
NmuCI GTSAC 1 cut(s) 197
NsiI ATGCAT 1 cut(s) 978
NspI RCATGY 2 cut(s) 187, 1334
NspV TTCGAA 1 cut(s) 453
OliI CACNNNNGTG 1 cut(s) 215
PaeI GCATGC 1 cut(s) 1334
PaeR7I CTCGAG 1 cut(s) 368
PagI TCATGA 1 cut(s) 168
PaqCI CACCTGC 1 cut(s) 274
PcsI WCGNNNNNNNCGW 3 cut(s) 12, 19, 375
PctI GAATGC 1 cut(s) 1166
PfeI GAWTC 7 cut(s) 137, 248, 269, 450, 455, 515, 947
Pfl23II CGTACG 1 cut(s) 224
PflFI GACNNNGTC 2 cut(s) 97, 212
PleI GAGTC 6 cut(s) 316, 357, 360, 391, 1218, 1252
PpsI GAGTC 6 cut(s) 316, 357, 360, 391, 1218, 1252
Ppu21I YACGTR 1 cut(s) 809
PpuMI RGGWCCY 1 cut(s) 321
PshAI GACNNNNGTC 1 cut(s) 9
PsiI TTATAA 2 cut(s) 990, 1289
Psp5II RGGWCCY 1 cut(s) 321
PspFI CCCAGC 1 cut(s) 440
PspLI CGTACG 1 cut(s) 224
PspN4I GGNNCC 4 cut(s) 95, 243, 322, 415
PspPI GGNCC 6 cut(s) 43, 93, 104, 321, 391, 862
PspPPI RGGWCCY 1 cut(s) 321
PspXI VCTCGAGB 1 cut(s) 368
PsyI GACNNNGTC 2 cut(s) 97, 212
RsaI GTAC 3 cut(s) 25, 226, 243
RsaNI GTAC 3 cut(s) 24, 225, 242
RseI CAYNNNNRTG 1 cut(s) 215
SaqAI TTAA 2 cut(s) 1121, 1232
Sau96I GGNCC 6 cut(s) 43, 93, 104, 321, 391, 862
SchI GAGTC 6 cut(s) 317, 358, 360, 392, 1219, 1253
ScrFI CCNGG 1 cut(s) 107
SfaNI GCATC 2 cut(s) 985, 1240
Sfr274I CTCGAG 1 cut(s) 368
SfuI TTCGAA 1 cut(s) 453
SgrAI CRCCGGYG 1 cut(s) 328
SinI GGWCC 4 cut(s) 43, 93, 321, 862
SlaI CTCGAG 1 cut(s) 368
SmiMI CAYNNNNRTG 1 cut(s) 215
SmlI CTYRAG 2 cut(s) 368, 720
SmoI CTYRAG 2 cut(s) 368, 720
SphI GCATGC 1 cut(s) 1334
Sse9I AATT 4 cut(s) 538, 893, 953, 1275
SspMI CTAG 1 cut(s) 621
StyD4I CCNGG 1 cut(s) 105
StyI CCWWGG 1 cut(s) 39
TaaI ACNGT 5 cut(s) 28, 87, 118, 214, 1283
TaiI ACGT 3 cut(s) 282, 604, 811
TaqI TCGA 9 cut(s) 33, 174, 347, 369, 431, 453, 766, 1175, 1379
TasI AATT 4 cut(s) 538, 893, 953, 1275
TauI GCSGC 4 cut(s) 233, 262, 414, 617
TfiI GAWTC 7 cut(s) 137, 248, 269, 450, 455, 515, 947
Tru1I TTAA 2 cut(s) 1121, 1232
Tru9I TTAA 2 cut(s) 1121, 1232
TscAI CASTG 2 cut(s) 864, 1162
TseFI GTSAC 1 cut(s) 197
TseI GCWGC 8 cut(s) 291, 461, 476, 605, 617, 644, 677, 740
Tsp45I GTSAC 1 cut(s) 197
TspDTI ATGAA 1 cut(s) 1308
TspGWI ACGGA 4 cut(s) 212, 281, 1368, 1389
TspRI CASTG 2 cut(s) 864, 1162
Tth111I GACNNNGTC 2 cut(s) 97, 212
VpaK11BI GGWCC 4 cut(s) 43, 93, 321, 862
XapI RAATTY 2 cut(s) 538, 953
XceI RCATGY 2 cut(s) 187, 1334
XhoI CTCGAG 1 cut(s) 368
XspI CTAG 1 cut(s) 621
Zsp2I ATGCAT 1 cut(s) 978
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.