Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0011742

Physical Location & Seq

Genomic Coordinates Forward (+)

20885740 .. 20887666

Gene Structure 1927 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGATGAAGGCAAGTTCGTGCTTAATGCAAATGAAGAATTACTGAAACAACAAAGCTTTTTCCCACCAAGTAGATCATGTTCGCAGAATTCGTATGTATCAGAGAGACGGTCAAGGGCAACCCACCATTTAAATTTTCCATCAAATACATGGATAAGTTTTATCTTATTAGAGATGGCCTCCTGTAGTTCTTCCCCATTTATCTCCCACTTTCTAACAAGACCAAACCACTTCTCTCCTTCCTCATCACAAATGCCGCCGCCTCCGCCACAAAATCTTCCTCCACAACCGCCACATTCTCCGACACCAAGTCAGCAGCTCAGCACAAGTTCATCCGAGCACCCGACGACACCGGTAAAAGAAGTGCAGAAAAAGCCATCCAAGACCAAAACCAAGGGAGACTCCACAGACTGGATAGCTTCCACGTTGACCAGAAGGTTTGGGATTGGTGCTGGCCTTGCTTGGGCTGCCTTTCTCACAGTTGGTGTAGTCTCTGAGCAAATTAAAACCCGCATTGAAGTCTCCCAACAAGAATCAAACACAAGGAATGTTGAGAAAGAAGAAGAGGTGGTGTTACCTAATGACATAAGATACTACGAGTTAAGAATGGGCGGCGGAGCTACTCCGAGGCCGGGGGACTTGGTGGTGATCGACCTGAAGGGCAAAGTAGAAGGCAGCGGACTAGTGTTTGTGGACACATTTGAGCGGGAGAAGAAGTCATTGGCTCTGGTGGTGGGGTCCAGGCAGCCTTACAGCAAGGGAGTATGTGAAGGGATAGAGTATGTGATGAGATCCATGAAGGCAGGTGGCAAAAGGAGAGTGGTCGTTCCTCCAAGCTTGGGGTTCGGAGAAAATGGTGCAGATATGGGTCCTGGTCTGCAAATTCCTCCTTCTGCAACCCTAGAGTATATTATTGAGGTTGATAGAGTCTCAATTGCACCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031976 GO:0031984 GO:0034357 GO:0036211 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

316

Amino Acids

34.54

Weight (kDa)

8.68

Isoelectric Point (pI)

64.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	207 - 307	6.4e-18	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18170 AT1G73655
malus_domestica	MD06G1230600.v1.1 MD14G1235200.v1.1
prunus_persica	Prupe.5G231900_v2.0.a1
pyrus_communis	pycom06g20180 pycom14g19620 pycom17g14050
rosa_chinensis	RchiOBHm_Chr7g0178601
rosa_laevigata	RLG00000005433
rosa_multiflora	Rmu_co8510969.1_g000001 Rmu_sc0002320.1_g000004
rosa_roxburghii	Rroxscaffold_3G00274770
rosa_rugosa	Rorug06G0418300
rosa_samantha	Rh7AG017000 Rh7BG016500 Rh7CG017200 Rh7DG017100
rosa_wichuraiana	Rw7G001370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	794
Acc36I	ACCTGC	1 cut(s)	794
AccB7I	CCANNNNNTGG	1 cut(s)	411
AccBSI	CCGCTC	1 cut(s)	706
AciI	CCGC	9 cut(s)	257, 260, 266, 290, 511, 612, 615, 678, 706
AclWI	GGATC	1 cut(s)	786
AcsI	RAATTY	3 cut(s)	88, 133, 882
AcuI	CTGAAG	1 cut(s)	677
AfiI	CCNNNNNNNGG	4 cut(s)	411, 463, 632, 839
AgeI	ACCGGT	1 cut(s)	352
AgsI	TTSAA	1 cut(s)	518
AhdI	GACNNNNNGTC	1 cut(s)	309
AhlI	ACTAGT	1 cut(s)	682
AjnI	CCWGG	2 cut(s)	740, 871
AjuI	GAANNNNNNNTTGG	2 cut(s)	704, 736
AluBI	AGCT	5 cut(s)	57, 319, 419, 620, 837
AluI	AGCT	5 cut(s)	57, 319, 419, 620, 837
Alw21I	GWGCWC	1 cut(s)	342
Alw26I	GTCTC	5 cut(s)	100, 393, 496, 526, 934
AlwI	GGATC	1 cut(s)	786
AoxI	GGCC	3 cut(s)	177, 454, 629
ApeKI	GCWGC	4 cut(s)	316, 467, 675, 745
ApoI	RAATTY	3 cut(s)	88, 133, 882
AsiGI	ACCGGT	1 cut(s)	352
AspS9I	GGNCC	2 cut(s)	738, 869
AsuC2I	CCSGG	1 cut(s)	633
AsuHPI	GGTGA	1 cut(s)	658
AvaII	GGWCC	2 cut(s)	738, 869
Bbv12I	GWGCWC	1 cut(s)	342
BbvI	GCAGC	4 cut(s)	328, 454, 687, 757
BccI	CCATC	3 cut(s)	148, 169, 385
BciT130I	CCWGG	2 cut(s)	742, 873
BcnI	CCSGG	1 cut(s)	633
BcoDI	GTCTC	5 cut(s)	100, 393, 496, 526, 934
BcuI	ACTAGT	1 cut(s)	682
BfaI	CTAG	2 cut(s)	683, 902
BfmI	CTRYAG	1 cut(s)	184
BfuAI	ACCTGC	1 cut(s)	794
BisI	GCNGC	7 cut(s)	257, 260, 317, 468, 613, 676, 746
BlpI	GCTNAGC	1 cut(s)	320
BlsI	GCNGC	7 cut(s)	258, 261, 318, 469, 614, 677, 747
Bme1390I	CCNGG	3 cut(s)	633, 742, 873
Bme18I	GGWCC	2 cut(s)	738, 869
BmeRI	GACNNNNNGTC	1 cut(s)	309
BmgT120I	GGNCC	2 cut(s)	738, 869
BmiI	GGNNCC	2 cut(s)	739, 870
BmrFI	CCNGG	3 cut(s)	633, 742, 873
BplI	GAGNNNNNCTC	2 cut(s)	164, 196
Bpu1102I	GCTNAGC	1 cut(s)	320
BpuMI	CCSGG	1 cut(s)	633
BsaJI	CCNNGG	3 cut(s)	393, 626, 632
BsaWI	WCCGGW	1 cut(s)	352
BsaXI	ACNNNNNCTCC	2 cut(s)	701, 731
Bsc4I	CCNNNNNNNGG	4 cut(s)	411, 463, 632, 839
Bse118I	RCCGGY	1 cut(s)	352
Bse1I	ACTGG	1 cut(s)	416
BseBI	CCWGG	2 cut(s)	742, 873
BseDI	CCNNGG	3 cut(s)	393, 626, 632
BseGI	GGATG	3 cut(s)	10, 332, 377
BseLI	CCNNNNNNNGG	4 cut(s)	411, 463, 632, 839
BseMII	CTCAG	2 cut(s)	334, 486
BseNI	ACTGG	1 cut(s)	416
BseXI	GCAGC	4 cut(s)	328, 454, 687, 757
BsgI	GTGCAG	2 cut(s)	386, 879
BshFI	GGCC	3 cut(s)	179, 456, 631
BshTI	ACCGGT	1 cut(s)	352
BsiHKAI	GWGCWC	1 cut(s)	342
BsiSI	CCGG	2 cut(s)	353, 632
BslFI	GGGAC	1 cut(s)	650
BslI	CCNNNNNNNGG	4 cut(s)	411, 463, 632, 839
BsmAI	GTCTC	5 cut(s)	100, 393, 496, 526, 934
BsmBI	CGTCTC	1 cut(s)	100
BsmFI	GGGAC	1 cut(s)	650
BsnI	GGCC	3 cut(s)	179, 456, 631
Bsp1286I	GDGCHC	1 cut(s)	342
Bsp143I	GATC	3 cut(s)	74, 648, 791
Bsp1720I	GCTNAGC	1 cut(s)	320
BspACI	CCGC	9 cut(s)	257, 260, 266, 290, 511, 612, 615, 678, 706
BspANI	GGCC	3 cut(s)	179, 456, 631
BspCNI	CTCAG	2 cut(s)	333, 487
BspLI	GGNNCC	2 cut(s)	739, 870
BspMI	ACCTGC	1 cut(s)	794
BspPI	GGATC	1 cut(s)	786
BsrBI	CCGCTC	1 cut(s)	706
BsrFI	RCCGGY	1 cut(s)	352
BsrI	ACTGG	1 cut(s)	416
BssAI	RCCGGY	1 cut(s)	352
BssECI	CCNNGG	3 cut(s)	393, 626, 632
BssMI	GATC	3 cut(s)	74, 648, 791
BssT1I	CCWWGG	1 cut(s)	393
Bst2UI	CCWGG	2 cut(s)	742, 873
Bst4CI	ACNGT	2 cut(s)	111, 481
Bst6I	CTCTTC	1 cut(s)	558
BstC8I	GCNNGC	1 cut(s)	454
BstDEI	CTNAG	2 cut(s)	320, 495
BstF5I	GGATG	3 cut(s)	10, 332, 377
BstKTI	GATC	3 cut(s)	77, 651, 794
BstMAI	GTCTC	5 cut(s)	100, 393, 496, 526, 934
BstMBI	GATC	3 cut(s)	74, 648, 791
BstMWI	GCNNNNNNNGC	4 cut(s)	265, 373, 458, 467
BstNI	CCWGG	2 cut(s)	742, 873
BstSCI	CCNGG	3 cut(s)	631, 740, 871
BstSFI	CTRYAG	1 cut(s)	184
BstV1I	GCAGC	4 cut(s)	328, 454, 687, 757
BstX2I	RGATCY	1 cut(s)	791
BstYI	RGATCY	1 cut(s)	791
BsuRI	GGCC	3 cut(s)	179, 456, 631
BtsCI	GGATG	3 cut(s)	10, 332, 377
BveI	ACCTGC	1 cut(s)	794
Cac8I	GCNNGC	1 cut(s)	454
Cfr10I	RCCGGY	1 cut(s)	352
Cfr13I	GGNCC	2 cut(s)	738, 869
CspAI	ACCGGT	1 cut(s)	352
CviAII	CATG	4 cut(s)	78, 150, 796, 945
DdeI	CTNAG	2 cut(s)	320, 495
DpnI	GATC	3 cut(s)	76, 650, 793
DpnII	GATC	3 cut(s)	74, 648, 791
DraI	TTTAAA	1 cut(s)	132
DriI	GACNNNNNGTC	1 cut(s)	309
Eam1104I	CTCTTC	1 cut(s)	558
Eam1105I	GACNNNNNGTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	558
EciI	GGCGGA	2 cut(s)	255, 630
Eco130I	CCWWGG	1 cut(s)	393
Eco47I	GGWCC	2 cut(s)	738, 869
Eco57I	CTGAAG	1 cut(s)	677
EcoO109I	RGGNCCY	1 cut(s)	869
EcoRI	GAATTC	1 cut(s)	88
EcoRII	CCWGG	2 cut(s)	740, 871
EcoT14I	CCWWGG	1 cut(s)	393
ErhI	CCWWGG	1 cut(s)	393
Esp3I	CGTCTC	1 cut(s)	100
FaeI	CATG	4 cut(s)	81, 153, 799, 948
FaqI	GGGAC	1 cut(s)	650
FatI	CATG	4 cut(s)	77, 149, 795, 944
FauI	CCCGC	2 cut(s)	518, 699
Fnu4HI	GCNGC	7 cut(s)	257, 260, 317, 468, 613, 676, 746
FokI	GGATG	3 cut(s)	17, 319, 364
Fsp4HI	GCNGC	7 cut(s)	257, 260, 317, 468, 613, 676, 746
FspBI	CTAG	2 cut(s)	683, 902
GluI	GCNGC	7 cut(s)	257, 260, 317, 468, 613, 676, 746
HaeIII	GGCC	3 cut(s)	179, 456, 631
HapII	CCGG	2 cut(s)	353, 632
Hin1II	CATG	4 cut(s)	81, 153, 799, 948
HincII	GTYRAC	1 cut(s)	429
HindII	GTYRAC	1 cut(s)	429
HindIII	AAGCTT	2 cut(s)	55, 835
HinfI	GANTC	3 cut(s)	401, 533, 927
HpaII	CCGG	2 cut(s)	353, 632
HphI	GGTGA	1 cut(s)	658
Hpy166II	GTNNAC	2 cut(s)	429, 694
Hpy188I	TCNGA	6 cut(s)	103, 303, 337, 496, 627, 848
Hpy8I	GTNNAC	2 cut(s)	429, 694
Hpy99I	CGWCG	1 cut(s)	349
HpyAV	CCTTC	7 cut(s)	249, 429, 652, 665, 764, 793, 900
HpyCH4III	ACNGT	2 cut(s)	111, 481
HpyCH4IV	ACGT	1 cut(s)	425
HpyCH4V	TGCA	7 cut(s)	29, 367, 860, 880, 896, 938, 944
HpyF10VI	GCNNNNNNNGC	4 cut(s)	265, 373, 458, 467
HpyF3I	CTNAG	2 cut(s)	320, 495
HpySE526I	ACGT	1 cut(s)	425
Hsp92II	CATG	4 cut(s)	81, 153, 799, 948
Kzo9I	GATC	3 cut(s)	74, 648, 791
LmnI	GCTCC	1 cut(s)	617
Lsp1109I	GCAGC	4 cut(s)	328, 454, 687, 757
MaeI	CTAG	2 cut(s)	683, 902
MaeII	ACGT	1 cut(s)	425
MaeIII	GTNAC	1 cut(s)	573
MalI	GATC	3 cut(s)	76, 650, 793
MbiI	CCGCTC	1 cut(s)	706
MboI	GATC	3 cut(s)	74, 648, 791
MboII	GAAGA	6 cut(s)	47, 183, 269, 572, 575, 724
MfeI	CAATTG	1 cut(s)	933
MflI	RGATCY	1 cut(s)	791
MhlI	GDGCHC	1 cut(s)	342
MluCI	AATT	6 cut(s)	38, 88, 133, 501, 882, 933
MlyI	GAGTC	2 cut(s)	395, 936
MmeI	TCCRAC	1 cut(s)	326
MnlI	CCTC	9 cut(s)	190, 253, 273, 291, 559, 621, 840, 897, 910
MseI	TTAA	4 cut(s)	24, 131, 504, 602
MslI	CAYNNNNRTG	1 cut(s)	943
MspA1I	CMGCKG	1 cut(s)	678
MspI	CCGG	2 cut(s)	353, 632
MspR9I	CCNGG	3 cut(s)	633, 742, 873
MunI	CAATTG	1 cut(s)	933
MvaI	CCWGG	2 cut(s)	742, 873
MwoI	GCNNNNNNNGC	4 cut(s)	265, 373, 458, 467
NciI	CCSGG	1 cut(s)	633
NdeII	GATC	3 cut(s)	74, 648, 791
NlaIII	CATG	4 cut(s)	81, 153, 799, 948
NlaIV	GGNNCC	2 cut(s)	739, 870
PaqCI	CACCTGC	1 cut(s)	794
PcsI	WCGNNNNNNNCGW	1 cut(s)	89
PfeI	GAWTC	1 cut(s)	533
PflMI	CCANNNNNTGG	1 cut(s)	411
PinAI	ACCGGT	1 cut(s)	352
PkrI	GCNGC	7 cut(s)	258, 261, 318, 469, 614, 677, 747
PleI	GAGTC	2 cut(s)	395, 935
PpsI	GAGTC	2 cut(s)	395, 935
PpuMI	RGGWCCY	1 cut(s)	869
Psp5II	RGGWCCY	1 cut(s)	869
Psp6I	CCWGG	2 cut(s)	740, 871
PspGI	CCWGG	2 cut(s)	740, 871
PspN4I	GGNNCC	2 cut(s)	739, 870
PspPI	GGNCC	2 cut(s)	738, 869
PspPPI	RGGWCCY	1 cut(s)	869
PsrI	GAACNNNNNNTAC	2 cut(s)	64, 96
PsuI	RGATCY	1 cut(s)	791
RseI	CAYNNNNRTG	1 cut(s)	943
SaqAI	TTAA	4 cut(s)	24, 131, 504, 602
SatI	GCNGC	7 cut(s)	257, 260, 317, 468, 613, 676, 746
Sau3AI	GATC	3 cut(s)	74, 648, 791
Sau96I	GGNCC	2 cut(s)	738, 869
SchI	GAGTC	2 cut(s)	395, 936
ScrFI	CCNGG	3 cut(s)	633, 742, 873
SduI	GDGCHC	1 cut(s)	342
SfcI	CTRYAG	1 cut(s)	184
SinI	GGWCC	2 cut(s)	738, 869
SmiI	ATTTAAAT	1 cut(s)	132
SmiMI	CAYNNNNRTG	1 cut(s)	943
SpeI	ACTAGT	1 cut(s)	682
Sse9I	AATT	6 cut(s)	38, 88, 133, 501, 882, 933
SsiI	CCGC	9 cut(s)	257, 260, 266, 290, 511, 612, 615, 678, 706
SspMI	CTAG	2 cut(s)	683, 902
StyD4I	CCNGG	3 cut(s)	631, 740, 871
StyI	CCWWGG	1 cut(s)	393
SwaI	ATTTAAAT	1 cut(s)	132
TaaI	ACNGT	2 cut(s)	111, 481
TaiI	ACGT	1 cut(s)	428
TaqI	TCGA	1 cut(s)	651
TasI	AATT	6 cut(s)	38, 88, 133, 501, 882, 933
TauI	GCSGC	3 cut(s)	259, 262, 615
TfiI	GAWTC	1 cut(s)	533
Tru1I	TTAA	4 cut(s)	24, 131, 504, 602
Tru9I	TTAA	4 cut(s)	24, 131, 504, 602
TseI	GCWGC	4 cut(s)	316, 467, 675, 745
TspDTI	ATGAA	4 cut(s)	21, 48, 321, 812
Van91I	CCANNNNNTGG	1 cut(s)	411
VpaK11BI	GGWCC	2 cut(s)	738, 869
XapI	RAATTY	3 cut(s)	88, 133, 882
XcmI	CCANNNNNNNNNTGG	1 cut(s)	147
XspI	CTAG	2 cut(s)	683, 902

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.