Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0005819

Physical Location & Seq

Genomic Coordinates Forward (+)

21682789 .. 21685248

Gene Structure 2460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGCGCGGACCTCGTCATCGAAGAAGCGGAAACACGAAGATGATGGAGGGGCAGAGGCAGAGGCAGAGGCAGAACCTGAGGTGGCGCAGCGGAAGAGGCTCAAAGCCCTCGCCTTCTCCAACAACCAGCTCTCAGAGATCCCTGCAAAGCCCCGCGCGCCTCTCACACCTTCAAACGGTGTCCTTAAGCAGCATGGCAAGGACATTGTAAAGAAATCTCAGCGGAAGAACAAGTTCCTCTTCTCCTTCCCTGGCCTCCTTGCCCCCATTGGAGGTGGTAAGATCGGCGACCTCAAGGATTTGGACACCAAGAACCCCGTCCTCTACCTCCAATTCCCTCAGGGTCAGATGAAGTTGTTTGGGACTCTTGTGTTCCCCAAGAACAGGTATCTGACAATGCAGTTCCCCAAGGGTGGAAAGAGTGTCATGTGCGAGGACTACTTCGATAATATGATTGTATTTTCCAATGCTTGGTGGATTGGGACAAAAGATCAGAATCCCGAGGAAGCCCAACTTGATTTTCCTAAGGAATTGACTGAGGGACAACACTCTGAGTTCGACTTTCAAGGTGGCGCAGGTTCAACATCTGCCAAAAAGCAAAGTGATAGTAAAAATGAAACTACATATGTTGAAGAGTATTCCCCACATAACAAGGTTGAAGATAATTTATCAGATGAGGAAAACAATGAATTAATGAAGGCAACACCAGTTCGACATTCGGCAAGAACTGCAGGAAAAAAATTCAAGTTTGGAGAAGCTTCTTCTGGAGATGATTCTGTTGAAAGTGATACCCCCTCAGCTGAAGGAGAAGATAAAAAAGTTGGAAGACTTGATTCTTCATCCGGGAAGCACAGTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016043 GO:0021700 GO:0022402 GO:0022622 GO:0030154 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032989 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044786 GO:0046483 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0070013 GO:0071695 GO:0071704 GO:0071840 GO:0090304 GO:0090558 GO:0090627 GO:0097159 GO:0099402 GO:1901360 GO:1901363 GO:1901576 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

287

Amino Acids

31.59

Weight (kDa)

6.63

Isoelectric Point (pI)

38.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48380 AT1G48380
fragaria_vesca	FvH4_5g18410 FvH4_5g18410 FvH4_5g18410 FvH4_5g18410
malus_domestica	MD14G1245900.v1.1
prunus_persica	Prupe.2G315400_v2.0.a1 Prupe.4G244900_v2.0.a1 Prupe.5G243800_v2.0.a1 Prupe.5G243800_v2.0.a1 Prupe.5G243800_v2.0.a1 Prupe.5G243800_v2.0.a1
pyrus_communis	pycom14g20680
rosa_chinensis	RchiOBHm_Chr7g0177071
rosa_laevigata	RLG00000005559
rosa_multiflora	Rmu_sc0005310.1_g000026
rosa_roxburghii	Rroxscaffold_3G00276120
rosa_rugosa	Rorug06G0403300 Rorug06G0403400 Rorug06G0403400 Rorug06G0403500
rosa_samantha	Rh7AG002900 Rh7BG003200 Rh7BG003300 Rh7CG002500 Rh7DG003000
rosa_wichuraiana	Rw7G000240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	566
AccB7I	CCANNNNNTGG	1 cut(s)	471
AccII	CGCG	3 cut(s)	7, 156, 158
AciI	CCGC	5 cut(s)	7, 28, 91, 154, 223
AclWI	GGATC	1 cut(s)	133
AcsI	RAATTY	1 cut(s)	740
AcuI	CTGAAG	1 cut(s)	822
AfiI	CCNNNNNNNGG	5 cut(s)	176, 272, 384, 413, 471
AflII	CTTAAG	1 cut(s)	185
AgsI	TTSAA	7 cut(s)	174, 566, 582, 632, 659, 745, 782
AjnI	CCWGG	1 cut(s)	250
AjuI	GAANNNNNNNTTGG	2 cut(s)	504, 536
AluBI	AGCT	3 cut(s)	130, 758, 800
AluI	AGCT	3 cut(s)	130, 758, 800
AlwI	GGATC	1 cut(s)	133
AlwNI	CAGNNNCTG	2 cut(s)	77, 858
Ama87I	CYCGRG	1 cut(s)	500
AoxI	GGCC	1 cut(s)	253
ApeKI	GCWGC	2 cut(s)	88, 190
ApoI	RAATTY	1 cut(s)	740
AseI	ATTAAT	1 cut(s)	692
Asp700I	GAANNNNTTC	1 cut(s)	233
AspLEI	GCGC	5 cut(s)	7, 88, 158, 160, 575
AspS9I	GGNCC	1 cut(s)	9
AsuC2I	CCSGG	1 cut(s)	844
AvaI	CYCGRG	1 cut(s)	500
AvaII	GGWCC	1 cut(s)	9
AxyI	CCTNAGG	3 cut(s)	78, 339, 525
BbsI	GAAGAC	1 cut(s)	832
BbvCI	CCTCAGC	1 cut(s)	796
BbvI	GCAGC	2 cut(s)	100, 202
BccI	CCATC	1 cut(s)	38
BciT130I	CCWGG	1 cut(s)	252
BcnI	CCSGG	1 cut(s)	844
BfmI	CTRYAG	1 cut(s)	729
BfrI	CTTAAG	1 cut(s)	185
BfuAI	ACCTGC	1 cut(s)	566
BisI	GCNGC	2 cut(s)	89, 191
BlsI	GCNGC	2 cut(s)	90, 192
Bme1390I	CCNGG	2 cut(s)	252, 844
Bme18I	GGWCC	1 cut(s)	9
BmeT110I	CYCGRG	1 cut(s)	500
BmgT120I	GGNCC	1 cut(s)	9
BmrFI	CCNGG	2 cut(s)	252, 844
BpiI	GAAGAC	1 cut(s)	832
BpmI	CTGGAG	1 cut(s)	786
Bpu10I	CCTNAGC	1 cut(s)	796
BpuEI	CTTGAG	1 cut(s)	278
BpuMI	CCSGG	1 cut(s)	844
BsaBI	GATNNNNATC	1 cut(s)	495
BsaJI	CCNNGG	3 cut(s)	250, 408, 501
Bsc4I	CCNNNNNNNGG	5 cut(s)	176, 272, 384, 413, 471
Bse1I	ACTGG	1 cut(s)	707
Bse21I	CCTNAGG	3 cut(s)	78, 339, 525
Bse8I	GATNNNNATC	1 cut(s)	495
BseBI	CCWGG	1 cut(s)	252
BseDI	CCNNGG	3 cut(s)	250, 408, 501
BseGI	GGATG	1 cut(s)	839
BseJI	GATNNNNATC	1 cut(s)	495
BseLI	CCNNNNNNNGG	5 cut(s)	176, 272, 384, 413, 471
BseMII	CTCAG	7 cut(s)	69, 147, 233, 353, 528, 543, 810
BseNI	ACTGG	1 cut(s)	707
BsePI	GCGCGC	1 cut(s)	156
BseXI	GCAGC	2 cut(s)	100, 202
Bsh1236I	CGCG	3 cut(s)	7, 156, 158
BshFI	GGCC	1 cut(s)	255
BsiHKCI	CYCGRG	1 cut(s)	500
BsiSI	CCGG	1 cut(s)	843
BslFI	GGGAC	3 cut(s)	376, 496, 555
BslI	CCNNNNNNNGG	5 cut(s)	176, 272, 384, 413, 471
BsmFI	GGGAC	3 cut(s)	376, 496, 555
BsnI	GGCC	1 cut(s)	255
BsoBI	CYCGRG	1 cut(s)	500
Bsp143I	GATC	3 cut(s)	138, 282, 490
BspACI	CCGC	5 cut(s)	7, 28, 91, 154, 223
BspANI	GGCC	1 cut(s)	255
BspCNI	CTCAG	7 cut(s)	70, 146, 232, 352, 529, 544, 809
BspFNI	CGCG	3 cut(s)	7, 156, 158
BspMAI	CTGCAG	1 cut(s)	733
BspMI	ACCTGC	1 cut(s)	566
BspPI	GGATC	1 cut(s)	133
BspTI	CTTAAG	1 cut(s)	185
BsrI	ACTGG	1 cut(s)	707
BssECI	CCNNGG	3 cut(s)	250, 408, 501
BssHII	GCGCGC	1 cut(s)	156
BssMI	GATC	3 cut(s)	138, 282, 490
BssT1I	CCWWGG	1 cut(s)	408
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	2 cut(s)	179, 854
Bst6I	CTCTTC	3 cut(s)	89, 245, 627
BstAFI	CTTAAG	1 cut(s)	185
BstAPI	GCANNNNNTGC	1 cut(s)	728
BstC8I	GCNNGC	1 cut(s)	158
BstDEI	CTNAG	8 cut(s)	78, 133, 219, 339, 525, 537, 552, 796
BstF5I	GGATG	1 cut(s)	839
BstFNI	CGCG	3 cut(s)	7, 156, 158
BstHHI	GCGC	5 cut(s)	7, 88, 158, 160, 575
BstKTI	GATC	3 cut(s)	141, 285, 493
BstMBI	GATC	3 cut(s)	138, 282, 490
BstMWI	GCNNNNNNNGC	3 cut(s)	97, 157, 728
BstNI	CCWGG	1 cut(s)	252
BstSCI	CCNGG	2 cut(s)	250, 842
BstSFI	CTRYAG	1 cut(s)	729
BstUI	CGCG	3 cut(s)	7, 156, 158
BstV1I	GCAGC	2 cut(s)	100, 202
BstV2I	GAAGAC	1 cut(s)	832
BstX2I	RGATCY	1 cut(s)	138
BstYI	RGATCY	1 cut(s)	138
Bsu36I	CCTNAGG	3 cut(s)	78, 339, 525
BsuRI	GGCC	1 cut(s)	255
BtsCI	GGATG	1 cut(s)	839
BveI	ACCTGC	1 cut(s)	566
Cac8I	GCNNGC	1 cut(s)	158
CaiI	CAGNNNCTG	2 cut(s)	77, 858
CfoI	GCGC	5 cut(s)	7, 88, 158, 160, 575
Cfr13I	GGNCC	1 cut(s)	9
CviAII	CATG	2 cut(s)	194, 427
CviJI	RGCY	8 cut(s)	100, 107, 130, 151, 255, 509, 758, 800
CviKI_1	RGCY	8 cut(s)	100, 107, 130, 151, 255, 509, 758, 800
DdeI	CTNAG	8 cut(s)	78, 133, 219, 339, 525, 537, 552, 796
DpnI	GATC	3 cut(s)	140, 284, 492
DpnII	GATC	3 cut(s)	138, 282, 490
Eam1104I	CTCTTC	3 cut(s)	89, 245, 627
EarI	CTCTTC	3 cut(s)	89, 245, 627
Eco130I	CCWWGG	1 cut(s)	408
Eco47I	GGWCC	1 cut(s)	9
Eco57I	CTGAAG	1 cut(s)	822
Eco81I	CCTNAGG	3 cut(s)	78, 339, 525
Eco88I	CYCGRG	1 cut(s)	500
EcoRII	CCWGG	1 cut(s)	250
EcoT14I	CCWWGG	1 cut(s)	408
ErhI	CCWWGG	1 cut(s)	408
FaeI	CATG	2 cut(s)	197, 430
FaiI	YATR	6 cut(s)	195, 428, 452, 625, 627, 648
FalI	AAGNNNNNCTT	4 cut(s)	224, 256, 498, 530
FaqI	GGGAC	3 cut(s)	376, 496, 555
FatI	CATG	2 cut(s)	193, 426
FauI	CCCGC	1 cut(s)	161
FauNDI	CATATG	1 cut(s)	625
Fnu4HI	GCNGC	2 cut(s)	89, 191
FokI	GGATG	1 cut(s)	826
Fsp4HI	GCNGC	2 cut(s)	89, 191
GlaI	GCGC	5 cut(s)	6, 87, 157, 159, 574
GluI	GCNGC	2 cut(s)	89, 191
GsuI	CTGGAG	1 cut(s)	786
HaeIII	GGCC	1 cut(s)	255
HapII	CCGG	1 cut(s)	843
HhaI	GCGC	5 cut(s)	7, 88, 158, 160, 575
Hin1II	CATG	2 cut(s)	197, 430
Hin6I	GCGC	5 cut(s)	5, 86, 156, 158, 573
HinP1I	GCGC	5 cut(s)	5, 86, 156, 158, 573
HindIII	AAGCTT	1 cut(s)	756
HinfI	GANTC	4 cut(s)	364, 496, 773, 833
HpaII	CCGG	1 cut(s)	843
Hpy188I	TCNGA	6 cut(s)	136, 348, 393, 495, 553, 673
Hpy188III	TCNNGA	2 cut(s)	500, 765
HpyAV	CCTTC	5 cut(s)	124, 180, 256, 691, 797
HpyCH4III	ACNGT	2 cut(s)	179, 854
HpyCH4V	TGCA	3 cut(s)	146, 400, 731
HpyF10VI	GCNNNNNNNGC	3 cut(s)	97, 157, 728
HpyF3I	CTNAG	8 cut(s)	78, 133, 219, 339, 525, 537, 552, 796
Hsp92II	CATG	2 cut(s)	197, 430
HspAI	GCGC	5 cut(s)	5, 86, 156, 158, 573
Kzo9I	GATC	3 cut(s)	138, 282, 490
Lsp1109I	GCAGC	2 cut(s)	100, 202
MaeIII	GTNAC	1 cut(s)	854
MalI	GATC	3 cut(s)	140, 284, 492
MboI	GATC	3 cut(s)	138, 282, 490
MflI	RGATCY	1 cut(s)	138
MluCI	AATT	5 cut(s)	332, 530, 664, 689, 740
MlyI	GAGTC	1 cut(s)	358
MmeI	TCCRAC	2 cut(s)	144, 802
MroXI	GAANNNNTTC	1 cut(s)	233
MseI	TTAA	2 cut(s)	186, 692
MslI	CAYNNNNRTG	1 cut(s)	39
MspA1I	CMGCKG	3 cut(s)	91, 223, 800
MspCI	CTTAAG	1 cut(s)	185
MspI	CCGG	1 cut(s)	843
MspR9I	CCNGG	2 cut(s)	252, 844
MvaI	CCWGG	1 cut(s)	252
MvnI	CGCG	3 cut(s)	7, 156, 158
MwoI	GCNNNNNNNGC	3 cut(s)	97, 157, 728
NciI	CCSGG	1 cut(s)	844
NdeI	CATATG	1 cut(s)	625
NdeII	GATC	3 cut(s)	138, 282, 490
NlaIII	CATG	2 cut(s)	197, 430
PauI	GCGCGC	1 cut(s)	156
PdmI	GAANNNNTTC	1 cut(s)	233
PfeI	GAWTC	3 cut(s)	496, 773, 833
PflFI	GACNNNGTC	1 cut(s)	13
PflMI	CCANNNNNTGG	1 cut(s)	471
PfoI	TCCNGGA	1 cut(s)	842
PkrI	GCNGC	2 cut(s)	90, 192
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
PshBI	ATTAAT	1 cut(s)	692
Psp6I	CCWGG	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	250
PspPI	GGNCC	1 cut(s)	9
PstI	CTGCAG	1 cut(s)	733
PstNI	CAGNNNCTG	2 cut(s)	77, 858
PsuI	RGATCY	1 cut(s)	138
PsyI	GACNNNGTC	1 cut(s)	13
PteI	GCGCGC	1 cut(s)	156
PvuII	CAGCTG	1 cut(s)	800
RseI	CAYNNNNRTG	1 cut(s)	39
SaqAI	TTAA	2 cut(s)	186, 692
SatI	GCNGC	2 cut(s)	89, 191
Sau3AI	GATC	3 cut(s)	138, 282, 490
Sau96I	GGNCC	1 cut(s)	9
SchI	GAGTC	1 cut(s)	358
ScrFI	CCNGG	2 cut(s)	252, 844
SfcI	CTRYAG	1 cut(s)	729
SinI	GGWCC	1 cut(s)	9
SmiMI	CAYNNNNRTG	1 cut(s)	39
SmlI	CTYRAG	2 cut(s)	185, 293
SmoI	CTYRAG	2 cut(s)	185, 293
Sse9I	AATT	5 cut(s)	332, 530, 664, 689, 740
SsiI	CCGC	5 cut(s)	7, 28, 91, 154, 223
StyD4I	CCNGG	2 cut(s)	250, 842
StyI	CCWWGG	1 cut(s)	408
TaaI	ACNGT	2 cut(s)	179, 854
TaqI	TCGA	4 cut(s)	20, 444, 558, 712
TasI	AATT	5 cut(s)	332, 530, 664, 689, 740
TfiI	GAWTC	3 cut(s)	496, 773, 833
Tru1I	TTAA	2 cut(s)	186, 692
Tru9I	TTAA	2 cut(s)	186, 692
TseI	GCWGC	2 cut(s)	88, 190
TspDTI	ATGAA	5 cut(s)	365, 630, 702, 710, 828
Tth111I	GACNNNGTC	1 cut(s)	13
Van91I	CCANNNNNTGG	1 cut(s)	471
Vha464I	CTTAAG	1 cut(s)	185
VpaK11BI	GGWCC	1 cut(s)	9
VspI	ATTAAT	1 cut(s)	692
XapI	RAATTY	1 cut(s)	740
XmnI	GAANNNNTTC	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.