Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006482

Physical Location & Seq

Genomic Coordinates Forward (+)

889287 .. 892056

Gene Structure 2770 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGAGGCAATCAGGAAGCTCAGAGATCAGGTCGCCAAGCAACAGCAGGCTGTATTCAAACAATTTTCTGGTGGCATATTTGGGGGATCGGATAATGTTGCCGCAGATGAAAATGAACAGCATCAGAAAATCGAGAAGTTGTACATATCAACTCGTTCTGCCAAGCATTACCAAAAGGAAATTGTCCGTGGTGTGGAAGGTTATGTTGTTGCCGGTTCAAAGCAAGTTGAAATAGGTACCAAATTATCAGAAGATAGCAGGAAATATGGTGCTGAAAAAACTTGCACCAGTGGTAACACATTGTCGAGAGCTGCACTGAGTTTTGGAAGAGCTCGTGCCCAAATGGAAAAGGAGCGTGGAGTTCTACTGAGAGCTCTTGGCACACAGGTTGCAGAGCCTTTGAGAGCAATGGTAGTAGGAGCGCCCTTGGAGGATGCTCGACATCTTGCTCAACGATATGCTAGAATGCGGCAAGATGCTGAAGCTCAGGCTATAGATGTTTCCAGACGCCAAGCCAAAGTACGGGAATCTGCAGGTAATGCTGATATTATCATGAAACTAGAAGCTGCTGAAGCCAAGCTTCAGGAGCTACAGTATAACGTTGCAATATTGGGAAAAGAGGCTGGTGCAGCAATGGCTGCTGTTGAAGGTCAACAACAAAGATTGACTCTTCAGCGTCTTCTTGTGATGGTTGAAGCAGAGCGCAATTATCATCAGAACGTTCTTCAGATACTTGATCAGCTTGAAGGCGAGATGTTGTCAGAAAACCAGCGAATTGAAGCATCGCCTAGTCCAGCTACAGAGAACTCTATGCCTCCGCCACCATCGTATGAGGATCTCGGACATAGCTTTGCTTCTGAAGCCTATGATGAATTGACAGACACGAGGGACTATTTCTTAGGAGAGGTTATGTACACGTTTCAAGCTGTAACTGATGTGGAGTTAAGCTTGTCTTTTGGGGATTATGTCGTTGTCCGGAAGGTATCAAACAATGGTTGGGCTGAAGGTGAATGCAAGGGAAAAGCCGGTTGGTTCCCATTTAATTACATCGAAATGCGGGACCGTGCGCTTGCTAGCAAGGTGGCTGCAGTCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0003674 GO:0005085 GO:0005088 GO:0005089 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006915 GO:0006950 GO:0007154 GO:0007165 GO:0007186 GO:0007254 GO:0008047 GO:0008150 GO:0008152 GO:0008219 GO:0009966 GO:0009987 GO:0010646 GO:0010941 GO:0010942 GO:0012501 GO:0016043 GO:0016310 GO:0017016 GO:0017048 GO:0019538 GO:0019899 GO:0022607 GO:0023014 GO:0023051 GO:0023052 GO:0030027 GO:0030030 GO:0030031 GO:0030032 GO:0030234 GO:0030695 GO:0031098 GO:0031252 GO:0031267 GO:0033554 GO:0035556 GO:0036211 GO:0042981 GO:0042995 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043087 GO:0043170 GO:0043412 GO:0043547 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051020 GO:0051056 GO:0051336 GO:0051345 GO:0051403 GO:0051716 GO:0060589 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0097581 GO:0098772 GO:0120025 GO:0120031 GO:0120036 GO:1901564 GO:1902531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SH3_9

Protein Analysis

366

Amino Acids

40.52

Weight (kDa)

5.76

Isoelectric Point (pI)

42.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SH3_9	PF14604	303 - 351	3.2e-10	Variant SH3 domain
SH3_1	PF00018	303 - 346	6.7e-08	SH3 domain
SH3_2	PF07653	314 - 351	4.1e-07	Variant SH3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34660 AT4G34660 AT4G34660
fragaria_vesca	FvH4_2g39000
malus_domestica	MD08G1018500.v1.1 MD08G1018900.v1.1 MD08G1019500.v1.1 MD08G1019700.v1.1 MD08G1019800.v1.1 MD08G1020600.v1.1 MD08G1020900.v1.1 MD15G1017700.v1.1 MD15G1018500.v1.1
prunus_persica	Prupe.1G371000_v2.0.a1
pyrus_communis	pycom08g01650 pycom15g01560
rosa_chinensis	RchiOBHm_Chr6g0302101
rosa_laevigata	RLG00000011195
rosa_multiflora	Rmu_co8454099.1_g000001
rosa_roxburghii	Rroxscaffold_7G00166080
rosa_rugosa	Rorug06G0312400
rosa_samantha	Rh6AG424700 Rh6BG477700 Rh6CG437600 Rh6DG424600
rosa_wichuraiana	Rw6G036780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	524
Acc65I	GGTACC	1 cut(s)	236
AccB1I	GGYRCC	1 cut(s)	236
AccIII	TCCGGA	1 cut(s)	975
AciI	CCGC	4 cut(s)	102, 469, 818, 1057
AclI	AACGTT	2 cut(s)	600, 720
AclWI	GGATC	2 cut(s)	94, 843
AcuI	CTGAAG	7 cut(s)	501, 566, 591, 656, 710, 879, 1023
AcyI	GRCGYC	1 cut(s)	508
AfaI	GTAC	4 cut(s)	143, 238, 522, 914
AfiI	CCNNNNNNNGG	2 cut(s)	193, 522
AflIII	ACRYGT	1 cut(s)	915
AgsI	TTSAA	8 cut(s)	58, 219, 230, 647, 695, 746, 779, 923
AjuI	GAANNNNNNNTTGG	2 cut(s)	1012, 1044
Alw21I	GWGCWC	2 cut(s)	334, 376
AlwI	GGATC	2 cut(s)	94, 843
Aor13HI	TCCGGA	1 cut(s)	975
ApeKI	GCWGC	5 cut(s)	311, 566, 629, 638, 1085
Asp718I	GGTACC	1 cut(s)	236
AspLEI	GCGC	3 cut(s)	424, 705, 1069
AspS9I	GGNCC	1 cut(s)	1060
AsuHPI	GGTGA	1 cut(s)	1019
AsuNHI	GCTAGC	1 cut(s)	1073
AvaII	GGWCC	1 cut(s)	1060
BaeGI	GKGCMC	1 cut(s)	340
BanI	GGYRCC	1 cut(s)	236
BanII	GRGCYC	2 cut(s)	334, 376
BauI	CACGAG	2 cut(s)	333, 883
BbsI	GAAGAC	1 cut(s)	671
Bbv12I	GWGCWC	2 cut(s)	334, 376
BbvI	GCAGC	5 cut(s)	298, 553, 625, 641, 1072
BccI	CCATC	2 cut(s)	682, 832
BclI	TGATCA	1 cut(s)	736
BfaI	CTAG	4 cut(s)	462, 560, 789, 1074
BfmI	CTRYAG	5 cut(s)	492, 531, 590, 798, 1086
BfoI	RGCGCY	1 cut(s)	425
BfuAI	ACCTGC	1 cut(s)	524
BisI	GCNGC	7 cut(s)	102, 312, 470, 567, 630, 639, 1086
BlsI	GCNGC	7 cut(s)	103, 313, 471, 568, 631, 640, 1087
Bme18I	GGWCC	1 cut(s)	1060
BmgT120I	GGNCC	1 cut(s)	1060
BmiI	GGNNCC	3 cut(s)	238, 1034, 1061
BmsI	GCATC	4 cut(s)	130, 424, 466, 791
BmtI	GCTAGC	1 cut(s)	1077
BpiI	GAAGAC	1 cut(s)	671
Bpu10I	CCTNAGC	1 cut(s)	486
BsaHI	GRCGYC	1 cut(s)	508
BsaJI	CCNNGG	2 cut(s)	187, 426
BsaWI	WCCGGW	1 cut(s)	975
BsaXI	ACNNNNNCTCC	2 cut(s)	578, 608
Bsc4I	CCNNNNNNNGG	2 cut(s)	193, 522
Bse118I	RCCGGY	2 cut(s)	212, 1025
Bse1I	ACTGG	1 cut(s)	288
Bse3DI	GCAATG	2 cut(s)	414, 639
BseAI	TCCGGA	1 cut(s)	975
BseDI	CCNNGG	2 cut(s)	187, 426
BseGI	GGATG	1 cut(s)	439
BseLI	CCNNNNNNNGG	2 cut(s)	193, 522
BseMI	GCAATG	2 cut(s)	414, 639
BseMII	CTCAG	4 cut(s)	34, 308, 359, 500
BseNI	ACTGG	1 cut(s)	288
BseSI	GKGCMC	1 cut(s)	340
BseXI	GCAGC	5 cut(s)	298, 553, 625, 641, 1072
BsgI	GTGCAG	2 cut(s)	297, 648
BshNI	GGYRCC	1 cut(s)	236
BsiHKAI	GWGCWC	2 cut(s)	334, 376
BsiSI	CCGG	3 cut(s)	213, 976, 1026
BslFI	GGGAC	2 cut(s)	902, 1073
BslI	CCNNNNNNNGG	2 cut(s)	193, 522
BsmFI	GGGAC	2 cut(s)	902, 1073
BsmI	GAATGC	2 cut(s)	471, 1016
Bsp1286I	GDGCHC	3 cut(s)	334, 340, 376
Bsp13I	TCCGGA	1 cut(s)	975
Bsp1407I	TGTACA	2 cut(s)	141, 912
Bsp143I	GATC	4 cut(s)	25, 86, 736, 835
BspACI	CCGC	4 cut(s)	102, 469, 818, 1057
BspCNI	CTCAG	4 cut(s)	33, 309, 360, 499
BspEI	TCCGGA	1 cut(s)	975
BspHI	TCATGA	1 cut(s)	552
BspLI	GGNNCC	3 cut(s)	238, 1034, 1061
BspMAI	CTGCAG	2 cut(s)	535, 1090
BspMI	ACCTGC	1 cut(s)	524
BspOI	GCTAGC	1 cut(s)	1077
BspPI	GGATC	2 cut(s)	94, 843
BspQI	GCTCTTC	1 cut(s)	322
BspT107I	GGYRCC	1 cut(s)	236
BsrDI	GCAATG	2 cut(s)	414, 639
BsrFI	RCCGGY	2 cut(s)	212, 1025
BsrGI	TGTACA	2 cut(s)	141, 912
BsrI	ACTGG	1 cut(s)	288
BssAI	RCCGGY	2 cut(s)	212, 1025
BssECI	CCNNGG	2 cut(s)	187, 426
BssMI	GATC	4 cut(s)	25, 86, 736, 835
BssNI	GRCGYC	1 cut(s)	508
BssSI	CACGAG	2 cut(s)	333, 883
BssT1I	CCWWGG	1 cut(s)	426
Bst2BI	CACGAG	2 cut(s)	333, 883
Bst4CI	ACNGT	2 cut(s)	594, 1064
Bst6I	CTCTTC	2 cut(s)	322, 675
BstACI	GRCGYC	1 cut(s)	508
BstAPI	GCANNNNNTGC	2 cut(s)	539, 638
BstAUI	TGTACA	2 cut(s)	141, 912
BstC8I	GCNNGC	3 cut(s)	48, 1071, 1075
BstDEI	CTNAG	5 cut(s)	20, 317, 368, 486, 898
BstDSI	CCRYGG	1 cut(s)	187
BstF5I	GGATG	1 cut(s)	439
BstH2I	RGCGCY	1 cut(s)	425
BstHHI	GCGC	3 cut(s)	424, 705, 1069
BstKTI	GATC	4 cut(s)	28, 89, 739, 838
BstMBI	GATC	4 cut(s)	25, 86, 736, 835
BstMWI	GCNNNNNNNGC	7 cut(s)	539, 572, 586, 629, 635, 638, 860
BstSFI	CTRYAG	5 cut(s)	492, 531, 590, 798, 1086
BstSLI	GKGCMC	1 cut(s)	340
BstV1I	GCAGC	5 cut(s)	298, 553, 625, 641, 1072
BstV2I	GAAGAC	1 cut(s)	671
BstX2I	RGATCY	1 cut(s)	835
BstYI	RGATCY	1 cut(s)	835
BtgI	CCRYGG	1 cut(s)	187
BtgZI	GCGATG	1 cut(s)	768
BtsCI	GGATG	1 cut(s)	439
BtsIMutI	CAGTG	2 cut(s)	295, 314
BveI	ACCTGC	1 cut(s)	524
Cac8I	GCNNGC	3 cut(s)	48, 1071, 1075
CciI	TCATGA	1 cut(s)	552
CfoI	GCGC	3 cut(s)	424, 705, 1069
Cfr10I	RCCGGY	2 cut(s)	212, 1025
Cfr13I	GGNCC	1 cut(s)	1060
CseI	GACGC	2 cut(s)	516, 665
Csp6I	GTAC	4 cut(s)	142, 237, 521, 913
CviAII	CATG	1 cut(s)	553
CviQI	GTAC	4 cut(s)	142, 237, 521, 913
DdeI	CTNAG	5 cut(s)	20, 317, 368, 486, 898
DpnI	GATC	4 cut(s)	27, 88, 738, 837
DpnII	GATC	4 cut(s)	25, 86, 736, 835
Eam1104I	CTCTTC	2 cut(s)	322, 675
EarI	CTCTTC	2 cut(s)	322, 675
EciI	GGCGGA	1 cut(s)	807
Ecl136II	GAGCTC	2 cut(s)	332, 374
Eco130I	CCWWGG	1 cut(s)	426
Eco24I	GRGCYC	2 cut(s)	334, 376
Eco47I	GGWCC	1 cut(s)	1060
Eco53kI	GAGCTC	2 cut(s)	332, 374
Eco57I	CTGAAG	7 cut(s)	501, 566, 591, 656, 710, 879, 1023
EcoICRI	GAGCTC	2 cut(s)	332, 374
EcoT14I	CCWWGG	1 cut(s)	426
EcoT38I	GRGCYC	2 cut(s)	334, 376
ErhI	CCWWGG	1 cut(s)	426
FaeI	CATG	1 cut(s)	556
FalI	AAGNNNNNCTT	4 cut(s)	564, 596, 937, 969
FaqI	GGGAC	2 cut(s)	902, 1073
FatI	CATG	1 cut(s)	552
FauI	CCCGC	1 cut(s)	1050
FbaI	TGATCA	1 cut(s)	736
Fnu4HI	GCNGC	7 cut(s)	102, 312, 470, 567, 630, 639, 1086
FokI	GGATG	1 cut(s)	446
FriOI	GRGCYC	2 cut(s)	334, 376
Fsp4HI	GCNGC	7 cut(s)	102, 312, 470, 567, 630, 639, 1086
FspBI	CTAG	4 cut(s)	462, 560, 789, 1074
GlaI	GCGC	3 cut(s)	423, 704, 1068
GluI	GCNGC	7 cut(s)	102, 312, 470, 567, 630, 639, 1086
HaeII	RGCGCY	1 cut(s)	425
HapII	CCGG	3 cut(s)	213, 976, 1026
HgaI	GACGC	2 cut(s)	516, 665
HhaI	GCGC	3 cut(s)	424, 705, 1069
Hin1I	GRCGYC	1 cut(s)	508
Hin1II	CATG	1 cut(s)	556
Hin6I	GCGC	3 cut(s)	422, 703, 1067
HinP1I	GCGC	3 cut(s)	422, 703, 1067
HincII	GTYRAC	1 cut(s)	653
HindII	GTYRAC	1 cut(s)	653
HindIII	AAGCTT	2 cut(s)	578, 946
HinfI	GANTC	2 cut(s)	527, 667
HpaII	CCGG	3 cut(s)	213, 976, 1026
HphI	GGTGA	1 cut(s)	1019
Hpy166II	GTNNAC	2 cut(s)	653, 915
Hpy188I	TCNGA	9 cut(s)	23, 91, 126, 250, 717, 729, 763, 842, 859
Hpy188III	TCNNGA	7 cut(s)	13, 133, 306, 504, 553, 584, 976
Hpy8I	GTNNAC	2 cut(s)	653, 915
HpyAV	CCTTC	5 cut(s)	191, 641, 740, 973, 998
HpyCH4III	ACNGT	2 cut(s)	594, 1064
HpyCH4IV	ACGT	3 cut(s)	600, 720, 917
HpyCH4V	TGCA	8 cut(s)	285, 314, 392, 533, 605, 629, 1014, 1088
HpyF10VI	GCNNNNNNNGC	7 cut(s)	539, 572, 586, 629, 635, 638, 860
HpyF3I	CTNAG	5 cut(s)	20, 317, 368, 486, 898
HpySE526I	ACGT	3 cut(s)	600, 720, 917
Hsp92I	GRCGYC	1 cut(s)	508
Hsp92II	CATG	1 cut(s)	556
HspAI	GCGC	3 cut(s)	422, 703, 1067
Kpn2I	TCCGGA	1 cut(s)	975
KpnI	GGTACC	1 cut(s)	240
Ksp22I	TGATCA	1 cut(s)	736
Kzo9I	GATC	4 cut(s)	25, 86, 736, 835
LguI	GCTCTTC	1 cut(s)	322
LmnI	GCTCC	3 cut(s)	352, 419, 586
Lsp1109I	GCAGC	5 cut(s)	298, 553, 625, 641, 1072
LweI	GCATC	4 cut(s)	130, 424, 466, 791
MaeI	CTAG	4 cut(s)	462, 560, 789, 1074
MaeII	ACGT	3 cut(s)	600, 720, 917
MaeIII	GTNAC	2 cut(s)	293, 928
MalI	GATC	4 cut(s)	27, 88, 738, 837
MboI	GATC	4 cut(s)	25, 86, 736, 835
MboII	GAAGA	5 cut(s)	263, 339, 662, 671, 716
MflI	RGATCY	1 cut(s)	835
MhlI	GDGCHC	3 cut(s)	334, 340, 376
MluCI	AATT	7 cut(s)	62, 180, 242, 706, 774, 872, 1042
MlyI	GAGTC	1 cut(s)	661
MnlI	CCTC	6 cut(s)	424, 613, 825, 826, 879, 898
MroI	TCCGGA	1 cut(s)	975
MseI	TTAA	3 cut(s)	944, 1041, 1096
MslI	CAYNNNNRTG	1 cut(s)	1052
MspI	CCGG	3 cut(s)	213, 976, 1026
Mva1269I	GAATGC	2 cut(s)	471, 1016
MwoI	GCNNNNNNNGC	7 cut(s)	539, 572, 586, 629, 635, 638, 860
NdeII	GATC	4 cut(s)	25, 86, 736, 835
NheI	GCTAGC	1 cut(s)	1073
NlaIII	CATG	1 cut(s)	556
NlaIV	GGNNCC	3 cut(s)	238, 1034, 1061
PagI	TCATGA	1 cut(s)	552
PciSI	GCTCTTC	1 cut(s)	322
PctI	GAATGC	2 cut(s)	471, 1016
PfeI	GAWTC	1 cut(s)	527
PkrI	GCNGC	7 cut(s)	103, 313, 471, 568, 631, 640, 1087
PleI	GAGTC	1 cut(s)	661
PpsI	GAGTC	1 cut(s)	661
Psp124BI	GAGCTC	2 cut(s)	334, 376
Psp1406I	AACGTT	2 cut(s)	600, 720
PspN4I	GGNNCC	3 cut(s)	238, 1034, 1061
PspPI	GGNCC	1 cut(s)	1060
PstI	CTGCAG	2 cut(s)	535, 1090
PsuI	RGATCY	1 cut(s)	835
RsaI	GTAC	4 cut(s)	143, 238, 522, 914
RsaNI	GTAC	4 cut(s)	142, 237, 521, 913
RseI	CAYNNNNRTG	1 cut(s)	1052
SacI	GAGCTC	2 cut(s)	334, 376
SapI	GCTCTTC	1 cut(s)	322
SaqAI	TTAA	3 cut(s)	944, 1041, 1096
SatI	GCNGC	7 cut(s)	102, 312, 470, 567, 630, 639, 1086
Sau3AI	GATC	4 cut(s)	25, 86, 736, 835
Sau96I	GGNCC	1 cut(s)	1060
SchI	GAGTC	1 cut(s)	661
SduI	GDGCHC	3 cut(s)	334, 340, 376
SfaNI	GCATC	4 cut(s)	130, 424, 466, 791
SfcI	CTRYAG	5 cut(s)	492, 531, 590, 798, 1086
SinI	GGWCC	1 cut(s)	1060
SmiMI	CAYNNNNRTG	1 cut(s)	1052
Sse9I	AATT	7 cut(s)	62, 180, 242, 706, 774, 872, 1042
SsiI	CCGC	4 cut(s)	102, 469, 818, 1057
SspI	AATATT	1 cut(s)	609
SspMI	CTAG	4 cut(s)	462, 560, 789, 1074
SstI	GAGCTC	2 cut(s)	334, 376
StyI	CCWWGG	1 cut(s)	426
TaaI	ACNGT	2 cut(s)	594, 1064
TaiI	ACGT	3 cut(s)	603, 723, 920
TaqI	TCGA	4 cut(s)	132, 305, 439, 1050
TasI	AATT	7 cut(s)	62, 180, 242, 706, 774, 872, 1042
TatI	WGTACW	2 cut(s)	141, 912
TauI	GCSGC	2 cut(s)	104, 472
TfiI	GAWTC	1 cut(s)	527
Tru1I	TTAA	3 cut(s)	944, 1041, 1096
Tru9I	TTAA	3 cut(s)	944, 1041, 1096
TscAI	CASTG	2 cut(s)	295, 321
TseI	GCWGC	5 cut(s)	311, 566, 629, 638, 1085
TspDTI	ATGAA	4 cut(s)	123, 129, 569, 885
TspGWI	ACGGA	1 cut(s)	176
TspRI	CASTG	2 cut(s)	295, 321
VpaK11BI	GGWCC	1 cut(s)	1060
XspI	CTAG	4 cut(s)	462, 560, 789, 1074

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.