Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0012190

Physical Location & Seq

Genomic Coordinates Reverse (-)

1947279 .. 1950197

Gene Structure 2919 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGAGTTCAAATCCTAGCATGATGAAAAAAATTTCTTTACCCTTGCCTGATCGATCTCTTTACAGATCAGCCCTCCATCATCCACGGATCGATCTTCCATACGATATCGGAGTAACGAGAAAAGCACTTTACAGTACAGACAGGAGCTCAGCCACCGACTCCGGCACCAGCGGAAGCGATTTGAGTCAGGAACATGGCTTCTATCACCTTGAAAGGAGTGGCAGTTACAATCGTGCTTCGGCGGTTGAGGAGCCAAAGTTGAGTTTAGGGTTTGATGAAGGGAAAGATCATCATCACCATATGGCTAGTTCTCCTCCTCGAGCCCTCCAAATGCCAAGAAACTTCAACAGTAATCATTACTTCAACCACCACCACCCTCAAATCTACGGCCGCGAGTTCAAGAGAAGCGCGAGAACGGTTGGTGGTGTGAAAAGAAGCATCAGAGCTCCAAGAATGCGGTGGACTACAACCCTCCATGCCCATTTCGTTCATGCAGTGCAGCTTCTTGGCGGCCATGAAAGAGCAACGCCAAAATCTGTGTTAGAGTTGATGAATGTGAAGGATCTAACCCTTGCTCACGTGAAGAGTCACTTGCAGATGTATAGAACAGTGAAGAGCACTGACAATAAAGGAACAGGTCATGAAGGGCAAACAGACATGGGTTTGAGTCAAAATCCAGGAATCAATCCAGCACTTCAAGTCAATGGACAATTATCTTGTGAAGCTAATACTAATAGAGGTTTGTGGCCTTCTTTGACGGAGATCACAAATGGGAGCTCCAATTTAAGACATGGACATGGTTTGACATATTCTCATTCTCCACCATCAAATGGCACCAAGGTGGAAGAAGAGGATTCAGGCCGCCGTCATGTGTATGCTCAAAGCCTGAAGGAAAGGCCGACGCTGGATTGTAGTTCCTTGGCATCGTCGGATATGTACCTTAATCTAGAGTTCACTCTTGGAAGGCCAAGTGGCGAGTGGACTGTGCTCAATAACCTCAACCTTCAAATGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030312 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071944 GO:0080060 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

339

Amino Acids

37.73

Weight (kDa)

9.35

Isoelectric Point (pI)

49.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	151 - 202	1.3e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42630 AT5G42630
fragaria_vesca	FvH4_2g40620
malus_domestica	MD08G1039300.v1.1 MD15G1034000.v1.1
prunus_persica	Prupe.1G387800_v2.0.a1
pyrus_communis	pycom08g03140 pycom15g03130
rosa_chinensis	RchiOBHm_Chr6g0300071
rosa_laevigata	RLG00000011369
rosa_multiflora	Rmu_co8480485.1_g000001 Rmu_sc0010665.1_g000023
rosa_roxburghii	Rroxscaffold_7G00168130
rosa_rugosa	Rorug06G0293800
rosa_samantha	Rh6AG405600 Rh6BG413800 Rh6CG420900 Rh6DG406600
rosa_wichuraiana	Rw6G035490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	164, 833
AccB7I	CCANNNNNTGG	1 cut(s)	830
AccII	CGCG	2 cut(s)	393, 410
AciI	CCGC	6 cut(s)	171, 242, 391, 457, 510, 862
AclWI	GGATC	2 cut(s)	95, 570
AcoI	YGGCCR	2 cut(s)	388, 511
AcsI	RAATTY	1 cut(s)	30
AcuI	CTGAAG	1 cut(s)	908
AcvI	CACGTG	1 cut(s)	580
AfaI	GTAC	2 cut(s)	136, 938
AfiI	CCNNNNNNNGG	1 cut(s)	830
AgsI	TTSAA	7 cut(s)	9, 212, 346, 364, 400, 698, 1007
AjnI	CCWGG	1 cut(s)	676
AleI	CACNNNNGTG	1 cut(s)	839
AluBI	AGCT	5 cut(s)	147, 446, 502, 725, 777
AluI	AGCT	5 cut(s)	147, 446, 502, 725, 777
Alw21I	GWGCWC	5 cut(s)	149, 448, 620, 779, 990
AlwI	GGATC	2 cut(s)	95, 570
Ama87I	CYCGRG	1 cut(s)	318
AoxI	GGCC	6 cut(s)	388, 511, 746, 859, 896, 965
ApeKI	GCWGC	1 cut(s)	499
ApoI	RAATTY	1 cut(s)	30
AspLEI	GCGC	1 cut(s)	410
AsuHPI	GGTGA	2 cut(s)	197, 287
AvaI	CYCGRG	1 cut(s)	318
BanI	GGYRCC	2 cut(s)	164, 833
BanII	GRGCYC	4 cut(s)	149, 325, 448, 779
BbrPI	CACGTG	1 cut(s)	580
Bbv12I	GWGCWC	5 cut(s)	149, 448, 620, 779, 990
BbvI	GCAGC	1 cut(s)	511
BccI	CCATC	2 cut(s)	84, 832
BceAI	ACGGC	2 cut(s)	403, 849
BciT130I	CCWGG	1 cut(s)	678
BfaI	CTAG	3 cut(s)	15, 306, 947
BisI	GCNGC	4 cut(s)	391, 500, 511, 862
BlpI	GCTNAGC	1 cut(s)	148
BlsI	GCNGC	4 cut(s)	392, 501, 512, 863
Bme1390I	CCNGG	1 cut(s)	678
BmeT110I	CYCGRG	1 cut(s)	318
BmiI	GGNNCC	3 cut(s)	166, 252, 835
BmrFI	CCNGG	1 cut(s)	678
BmsI	GCATC	2 cut(s)	447, 932
Bpu1102I	GCTNAGC	1 cut(s)	148
Bsa29I	ATCGAT	2 cut(s)	52, 90
BsaAI	YACGTR	1 cut(s)	580
BsaBI	GATNNNNATC	1 cut(s)	291
BsaJI	CCNNGG	3 cut(s)	83, 837, 918
BsaXI	ACNNNNNCTCC	4 cut(s)	208, 238, 242, 272
Bsc4I	CCNNNNNNNGG	1 cut(s)	830
Bse8I	GATNNNNATC	1 cut(s)	291
BseBI	CCWGG	1 cut(s)	678
BseCI	ATCGAT	2 cut(s)	52, 90
BseDI	CCNNGG	3 cut(s)	83, 837, 918
BseGI	GGATG	1 cut(s)	79
BseJI	GATNNNNATC	1 cut(s)	291
BseLI	CCNNNNNNNGG	1 cut(s)	830
BseMII	CTCAG	1 cut(s)	162
BseRI	GAGGAG	3 cut(s)	263, 303, 306
BseX3I	CGGCCG	1 cut(s)	388
BseXI	GCAGC	1 cut(s)	511
BsgI	GTGCAG	1 cut(s)	518
Bsh1236I	CGCG	2 cut(s)	393, 410
Bsh1285I	CGRYCG	1 cut(s)	391
BshFI	GGCC	6 cut(s)	390, 513, 748, 861, 898, 967
BshNI	GGYRCC	2 cut(s)	164, 833
BshVI	ATCGAT	2 cut(s)	52, 90
BsiEI	CGRYCG	1 cut(s)	391
BsiHKAI	GWGCWC	5 cut(s)	149, 448, 620, 779, 990
BsiHKCI	CYCGRG	1 cut(s)	318
BsiSI	CCGG	1 cut(s)	162
BslI	CCNNNNNNNGG	1 cut(s)	830
BsmI	GAATGC	1 cut(s)	459
BsnI	GGCC	6 cut(s)	390, 513, 748, 861, 898, 967
BsoBI	CYCGRG	1 cut(s)	318
Bsp1286I	GDGCHC	6 cut(s)	149, 325, 448, 620, 779, 990
Bsp143I	GATC	8 cut(s)	49, 53, 65, 87, 91, 286, 562, 762
Bsp1720I	GCTNAGC	1 cut(s)	148
BspACI	CCGC	6 cut(s)	171, 242, 391, 457, 510, 862
BspANI	GGCC	6 cut(s)	390, 513, 748, 861, 898, 967
BspCNI	CTCAG	1 cut(s)	161
BspDI	ATCGAT	2 cut(s)	52, 90
BspFNI	CGCG	2 cut(s)	393, 410
BspHI	TCATGA	1 cut(s)	640
BspLI	GGNNCC	3 cut(s)	166, 252, 835
BspPI	GGATC	2 cut(s)	95, 570
BspQI	GCTCTTC	1 cut(s)	608
BspT107I	GGYRCC	2 cut(s)	164, 833
BssECI	CCNNGG	3 cut(s)	83, 837, 918
BssMI	GATC	8 cut(s)	49, 53, 65, 87, 91, 286, 562, 762
BssT1I	CCWWGG	2 cut(s)	837, 918
Bst2UI	CCWGG	1 cut(s)	678
Bst4CI	ACNGT	5 cut(s)	134, 350, 418, 610, 985
Bst6I	CTCTTC	3 cut(s)	578, 608, 843
BstBAI	YACGTR	1 cut(s)	580
BstDEI	CTNAG	1 cut(s)	148
BstDSI	CCRYGG	1 cut(s)	83
BstF5I	GGATG	1 cut(s)	79
BstFNI	CGCG	2 cut(s)	393, 410
BstHHI	GCGC	1 cut(s)	410
BstKTI	GATC	8 cut(s)	52, 56, 68, 90, 94, 289, 565, 765
BstMBI	GATC	8 cut(s)	49, 53, 65, 87, 91, 286, 562, 762
BstMCI	CGRYCG	1 cut(s)	391
BstNI	CCWGG	1 cut(s)	678
BstSCI	CCNGG	1 cut(s)	676
BstUI	CGCG	2 cut(s)	393, 410
BstV1I	GCAGC	1 cut(s)	511
BstX2I	RGATCY	1 cut(s)	562
BstYI	RGATCY	1 cut(s)	562
BstZI	CGGCCG	1 cut(s)	388
Bsu15I	ATCGAT	2 cut(s)	52, 90
BsuRI	GGCC	6 cut(s)	390, 513, 748, 861, 898, 967
BsuTUI	ATCGAT	2 cut(s)	52, 90
BtgI	CCRYGG	1 cut(s)	83
BtsCI	GGATG	1 cut(s)	79
BtsI	GCAGTG	1 cut(s)	501
BtsIMutI	CAGTG	3 cut(s)	501, 615, 618
CciI	TCATGA	1 cut(s)	640
CfoI	GCGC	1 cut(s)	410
ClaI	ATCGAT	2 cut(s)	52, 90
CseI	GACGC	1 cut(s)	910
Csp6I	GTAC	2 cut(s)	135, 937
CviQI	GTAC	2 cut(s)	135, 937
DdeI	CTNAG	1 cut(s)	148
DpnI	GATC	8 cut(s)	51, 55, 67, 89, 93, 288, 564, 764
DpnII	GATC	8 cut(s)	49, 53, 65, 87, 91, 286, 562, 762
EaeI	YGGCCR	2 cut(s)	388, 511
EagI	CGGCCG	1 cut(s)	388
Eam1104I	CTCTTC	3 cut(s)	578, 608, 843
EarI	CTCTTC	3 cut(s)	578, 608, 843
Ecl136II	GAGCTC	3 cut(s)	147, 446, 777
EclXI	CGGCCG	1 cut(s)	388
Eco130I	CCWWGG	2 cut(s)	837, 918
Eco24I	GRGCYC	4 cut(s)	149, 325, 448, 779
Eco32I	GATATC	1 cut(s)	106
Eco52I	CGGCCG	1 cut(s)	388
Eco53kI	GAGCTC	3 cut(s)	147, 446, 777
Eco57I	CTGAAG	1 cut(s)	908
Eco72I	CACGTG	1 cut(s)	580
Eco88I	CYCGRG	1 cut(s)	318
EcoICRI	GAGCTC	3 cut(s)	147, 446, 777
EcoRII	CCWGG	1 cut(s)	676
EcoRV	GATATC	1 cut(s)	106
EcoT14I	CCWWGG	2 cut(s)	837, 918
EcoT38I	GRGCYC	4 cut(s)	149, 325, 448, 779
ErhI	CCWWGG	2 cut(s)	837, 918
FalI	AAGNNNNNCTT	2 cut(s)	575, 607
FauNDI	CATATG	1 cut(s)	300
Fnu4HI	GCNGC	4 cut(s)	391, 500, 511, 862
FokI	GGATG	1 cut(s)	66
FriOI	GRGCYC	4 cut(s)	149, 325, 448, 779
Fsp4HI	GCNGC	4 cut(s)	391, 500, 511, 862
FspBI	CTAG	3 cut(s)	15, 306, 947
GlaI	GCGC	1 cut(s)	409
GluI	GCNGC	4 cut(s)	391, 500, 511, 862
HaeIII	GGCC	6 cut(s)	390, 513, 748, 861, 898, 967
HapII	CCGG	1 cut(s)	162
HgaI	GACGC	1 cut(s)	910
HhaI	GCGC	1 cut(s)	410
Hin6I	GCGC	1 cut(s)	408
HinP1I	GCGC	1 cut(s)	408
HinfI	GANTC	6 cut(s)	158, 184, 586, 667, 681, 854
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	2 cut(s)	197, 287
Hpy166II	GTNNAC	3 cut(s)	462, 954, 981
Hpy188I	TCNGA	3 cut(s)	110, 443, 931
Hpy188III	TCNNGA	4 cut(s)	188, 400, 641, 947
Hpy8I	GTNNAC	3 cut(s)	462, 954, 981
Hpy99I	CGWCG	2 cut(s)	904, 931
HpyAV	CCTTC	7 cut(s)	272, 553, 638, 759, 883, 957, 1013
HpyCH4III	ACNGT	5 cut(s)	134, 350, 418, 610, 985
HpyCH4IV	ACGT	1 cut(s)	579
HpyCH4V	TGCA	3 cut(s)	494, 499, 595
HpyF3I	CTNAG	1 cut(s)	148
HpySE526I	ACGT	1 cut(s)	579
HspAI	GCGC	1 cut(s)	408
Kzo9I	GATC	8 cut(s)	49, 53, 65, 87, 91, 286, 562, 762
LguI	GCTCTTC	1 cut(s)	608
LmnI	GCTCC	5 cut(s)	144, 250, 451, 774, 782
Lsp1109I	GCAGC	1 cut(s)	511
LweI	GCATC	2 cut(s)	447, 932
MaeI	CTAG	3 cut(s)	15, 306, 947
MaeII	ACGT	1 cut(s)	579
MaeIII	GTNAC	3 cut(s)	112, 224, 587
MalI	GATC	8 cut(s)	51, 55, 67, 89, 93, 288, 564, 764
MboI	GATC	8 cut(s)	49, 53, 65, 87, 91, 286, 562, 762
MboII	GAAGA	5 cut(s)	86, 595, 625, 857, 860
MflI	RGATCY	1 cut(s)	562
MhlI	GDGCHC	6 cut(s)	149, 325, 448, 620, 779, 990
MluCI	AATT	3 cut(s)	30, 710, 781
MlyI	GAGTC	4 cut(s)	152, 193, 595, 676
MmeI	TCCRAC	1 cut(s)	909
MseI	TTAA	2 cut(s)	785, 942
MslI	CAYNNNNRTG	3 cut(s)	795, 839, 873
MspA1I	CMGCKG	1 cut(s)	171
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	1 cut(s)	678
Mva1269I	GAATGC	1 cut(s)	459
MvaI	CCWGG	1 cut(s)	678
MvnI	CGCG	2 cut(s)	393, 410
NdeI	CATATG	1 cut(s)	300
NdeII	GATC	8 cut(s)	49, 53, 65, 87, 91, 286, 562, 762
NlaIV	GGNNCC	3 cut(s)	166, 252, 835
NmuCI	GTSAC	1 cut(s)	587
OliI	CACNNNNGTG	1 cut(s)	839
PaeR7I	CTCGAG	1 cut(s)	318
PagI	TCATGA	1 cut(s)	640
PciSI	GCTCTTC	1 cut(s)	608
PctI	GAATGC	1 cut(s)	459
PfeI	GAWTC	2 cut(s)	681, 854
PflMI	CCANNNNNTGG	1 cut(s)	830
PfoI	TCCNGGA	1 cut(s)	676
PkrI	GCNGC	4 cut(s)	392, 501, 512, 863
PleI	GAGTC	4 cut(s)	152, 192, 594, 675
PmaCI	CACGTG	1 cut(s)	580
PmlI	CACGTG	1 cut(s)	580
PpsI	GAGTC	4 cut(s)	152, 192, 594, 675
Ppu21I	YACGTR	1 cut(s)	580
Psp124BI	GAGCTC	3 cut(s)	149, 448, 779
Psp6I	CCWGG	1 cut(s)	676
PspCI	CACGTG	1 cut(s)	580
PspGI	CCWGG	1 cut(s)	676
PspN4I	GGNNCC	3 cut(s)	166, 252, 835
PspXI	VCTCGAGB	1 cut(s)	318
PsuI	RGATCY	1 cut(s)	562
RsaI	GTAC	2 cut(s)	136, 938
RsaNI	GTAC	2 cut(s)	135, 937
RseI	CAYNNNNRTG	3 cut(s)	795, 839, 873
SacI	GAGCTC	3 cut(s)	149, 448, 779
SapI	GCTCTTC	1 cut(s)	608
SaqAI	TTAA	2 cut(s)	785, 942
SatI	GCNGC	4 cut(s)	391, 500, 511, 862
Sau3AI	GATC	8 cut(s)	49, 53, 65, 87, 91, 286, 562, 762
SchI	GAGTC	4 cut(s)	152, 193, 595, 676
ScrFI	CCNGG	1 cut(s)	678
SduI	GDGCHC	6 cut(s)	149, 325, 448, 620, 779, 990
SfaNI	GCATC	2 cut(s)	447, 932
Sfr274I	CTCGAG	1 cut(s)	318
SlaI	CTCGAG	1 cut(s)	318
SmiMI	CAYNNNNRTG	3 cut(s)	795, 839, 873
SmlI	CTYRAG	1 cut(s)	318
SmoI	CTYRAG	1 cut(s)	318
Sse9I	AATT	3 cut(s)	30, 710, 781
SsiI	CCGC	6 cut(s)	171, 242, 391, 457, 510, 862
SspMI	CTAG	3 cut(s)	15, 306, 947
SstI	GAGCTC	3 cut(s)	149, 448, 779
StyD4I	CCNGG	1 cut(s)	676
StyI	CCWWGG	2 cut(s)	837, 918
TaaI	ACNGT	5 cut(s)	134, 350, 418, 610, 985
TaiI	ACGT	1 cut(s)	582
TaqI	TCGA	3 cut(s)	52, 90, 319
TasI	AATT	3 cut(s)	30, 710, 781
TatI	WGTACW	1 cut(s)	134
TauI	GCSGC	3 cut(s)	393, 513, 864
TfiI	GAWTC	2 cut(s)	681, 854
Tru1I	TTAA	2 cut(s)	785, 942
Tru9I	TTAA	2 cut(s)	785, 942
TscAI	CASTG	3 cut(s)	501, 615, 625
TseFI	GTSAC	1 cut(s)	587
TseI	GCWGC	1 cut(s)	499
Tsp45I	GTSAC	1 cut(s)	587
TspDTI	ATGAA	6 cut(s)	38, 291, 479, 531, 566, 657
TspGWI	ACGGA	2 cut(s)	100, 773
TspRI	CASTG	3 cut(s)	501, 615, 625
Van91I	CCANNNNNTGG	1 cut(s)	830
XapI	RAATTY	1 cut(s)	30
XbaI	TCTAGA	1 cut(s)	946
XcmI	CCANNNNNNNNNTGG	2 cut(s)	456, 975
XhoI	CTCGAG	1 cut(s)	318
XspI	CTAG	3 cut(s)	15, 306, 947

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.