pycom15g05620

Belongs to the glycosyltransferase 31 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0011407
Physical Location & Seq
Forward (+)
3375340 .. 3377856
2517 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1107 bp
ATGCCACTCTTTTTCCACCGCCAATCTTCTCTCCCCACCGCCACCGCCACCTCCCCCTCCTACTCCTCCAAGCTCCTCAAGCCCCTAAAGCCCCATCCGGCCCCTGTCCCCACGCGCGCTTCCCTGCCCATTATCGTCTTTTCACTCGTCTCCCTCTTCATCGGCCTTGCCGGAACCATCTTCGCCATCGCCGCCTTCCGCCGCCCGACCCCCATTCCCATTTTCCGATGCGGCAAATCGGACGACACTTTCCGGGGGTTTTACTCTCTGTCTAAGTCTCGGCAGGCCGGTGATAAAAATGGTGGCTTGGTTGATCGGCCCAAGCTTCTTGGGCTCGTCGGAATTCAGACCGGGTTCGGCTCGGCCGATCGCCGTGCAGCGTTGCGGAACACTTGGTTTCCTTCCGACCCAGATGGCCTTTTGAGGTTGGAACAAGCTACTGGTTTAGCATTTAGGTTCGTTATTGGGCGATCGAAAGACTCAAACAAGATGGCAGAGCTTCAGAAAGAGATCGATAAGTACAGGGACTTTTTGGTTACTGATATCAATGAAGAATATTCAAACCGTCCATGGAAAACGTTGGCATTTTTCAAAGCAGGATTTCAACTTTTCGAAGCAGATTACTATGTCAAGGCCAATGATGACATTTATTTGCGTCCAGATCGACTAGCAACACTTCTAGCCAAGGAACGAACGCATCCACAAACCTACATTGGATGCATGAAGAAAGGACCAGTAGTCACTGACCCTAAAATGAAATGGTATGAGAAATCAGGACATCTAATCGGGAATGAATACTTTCAGCATGCTTTTGGTCCTATTTATGTTCTGTCTGCAGAGGTGGTAGCATCATTGGCAGTCGCTAGAAATAGCAGTTTGAGAATGTTTAGCAATGAGGACGTCACGGTTGGATCATGGATGCTTGCTATGAATGTCAATCACGAGGATAATCGGGCATTATGTGACCCTCGCTGCACACCTACATCCGTTGCAGTCTGGGACATCCCAAAATGTTCAGGTTTGTGCAACCCAGCTATTAGGCTGAAAGAGCTTCATGCGATGAGAATGTGCTCCAAAAGTCCGACTCTGCTTCCTGATGACAGATAA

Protein Analysis

369

Amino Acids

41.16

Weight (kDa)

9.47

Isoelectric Point (pI)

34.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Galactosyl_T PF01762 123 - 317 1.6e-49 Galactosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011407)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26100 AT2G26100
fragaria_vesca FvH4_2g31860 FvH4_2g31860
malus_domestica MD08G1061800.v1.1 MD15G1059900.v1.1
prunus_persica Prupe.1G411800_v2.0.a1
pyrus_communis pycom08g05130 pycom15g05620
rosa_chinensis RchiOBHm_Chr6g0310931
rosa_laevigata RLG00000010449
rosa_multiflora Rmu_sc0012033.1_g000001
rosa_roxburghii Rroxscaffold_7G00158160
rosa_rugosa Rorug06G0384100 Rorug06G0384200
rosa_samantha Rh6AG498000 Rh6BG508400 Rh6CG514300 Rh6DG500800
rosa_wichuraiana Rw6G043370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 903
AccII CGCG 2 cut(s) 115, 117
AciI CCGC 8 cut(s) 19, 39, 45, 192, 199, 202, 231, 385
AclI AACGTT 1 cut(s) 578
AclWI GGATC 1 cut(s) 919
AcoI YGGCCR 1 cut(s) 363
AcsI RAATTY 1 cut(s) 342
AcuI CTGAAG 1 cut(s) 485
AcyI GRCGYC 1 cut(s) 900
AfaI GTAC 1 cut(s) 521
AgsI TTSAA 3 cut(s) 561, 592, 605
AhdI GACNNNNNGTC 1 cut(s) 737
AluBI AGCT 6 cut(s) 73, 325, 437, 499, 1034, 1051
AluI AGCT 6 cut(s) 73, 325, 437, 499, 1034, 1051
Alw21I GWGCWC 1 cut(s) 1073
Alw26I GTCTC 2 cut(s) 154, 282
AlwI GGATC 1 cut(s) 919
AoxI GGCC 7 cut(s) 99, 163, 285, 317, 363, 415, 633
ApeKI GCWGC 2 cut(s) 377, 972
ApoI RAATTY 1 cut(s) 342
Asp700I GAANNNNTTC 1 cut(s) 798
AspLEI GCGC 2 cut(s) 117, 119
AspS9I GGNCC 4 cut(s) 100, 318, 731, 815
AsuC2I CCSGG 2 cut(s) 254, 352
AsuHPI GGTGA 1 cut(s) 302
AsuII TTCGAA 1 cut(s) 612
AvaII GGWCC 2 cut(s) 731, 815
BanII GRGCYC 1 cut(s) 336
BauI CACGAG 1 cut(s) 941
Bbv12I GWGCWC 1 cut(s) 1073
BbvI GCAGC 2 cut(s) 389, 959
BccI CCATC 5 cut(s) 102, 185, 194, 407, 484
BceAI ACGGC 1 cut(s) 357
BcgI CGANNNNNNTGC 2 cut(s) 356, 390
BcnI CCSGG 2 cut(s) 254, 352
BcoDI GTCTC 2 cut(s) 154, 282
BfaI CTAG 3 cut(s) 668, 680, 864
BfmI CTRYAG 1 cut(s) 834
BisI GCNGC 5 cut(s) 192, 202, 232, 378, 973
BlsI GCNGC 5 cut(s) 193, 203, 233, 379, 974
Bme1390I CCNGG 2 cut(s) 254, 352
Bme18I GGWCC 2 cut(s) 731, 815
BmeRI GACNNNNNGTC 1 cut(s) 737
BmgT120I GGNCC 4 cut(s) 100, 318, 731, 815
BmiI GGNNCC 2 cut(s) 102, 175
BmrFI CCNGG 2 cut(s) 254, 352
BmsI GCATC 5 cut(s) 218, 706, 707, 857, 909
Bpu14I TTCGAA 1 cut(s) 612
BpuEI CTTGAG 1 cut(s) 62
BpuMI CCSGG 2 cut(s) 254, 352
Bsa29I ATCGAT 1 cut(s) 513
BsaHI GRCGYC 1 cut(s) 900
BsaJI CCNNGG 3 cut(s) 253, 569, 684
Bse118I RCCGGY 1 cut(s) 287
Bse1I ACTGG 2 cut(s) 445, 734
Bse3DI GCAATG 1 cut(s) 898
BseCI ATCGAT 1 cut(s) 513
BseDI CCNNGG 3 cut(s) 253, 569, 684
BseGI GGATG 6 cut(s) 94, 697, 722, 924, 983, 1002
BseMI GCAATG 1 cut(s) 898
BseNI ACTGG 2 cut(s) 445, 734
BsePI GCGCGC 1 cut(s) 115
BseRI GAGGAG 2 cut(s) 55, 65
BseX3I CGGCCG 1 cut(s) 363
BseXI GCAGC 2 cut(s) 389, 959
BseYI CCCAGC 1 cut(s) 1030
BsgI GTGCAG 2 cut(s) 396, 958
Bsh1236I CGCG 2 cut(s) 115, 117
Bsh1285I CGRYCG 3 cut(s) 366, 370, 473
BshFI GGCC 7 cut(s) 101, 165, 287, 319, 365, 417, 635
BshVI ATCGAT 1 cut(s) 513
BsiEI CGRYCG 3 cut(s) 366, 370, 473
BsiHKAI GWGCWC 1 cut(s) 1073
BsiSI CCGG 5 cut(s) 98, 171, 253, 288, 351
BslFI GGGAC 3 cut(s) 92, 539, 1013
BsmAI GTCTC 2 cut(s) 154, 282
BsmBI CGTCTC 1 cut(s) 154
BsmFI GGGAC 3 cut(s) 92, 539, 1013
BsnI GGCC 7 cut(s) 101, 165, 287, 319, 365, 417, 635
Bsp119I TTCGAA 1 cut(s) 612
Bsp1286I GDGCHC 2 cut(s) 336, 1073
Bsp143I GATC 6 cut(s) 313, 367, 470, 510, 661, 911
Bsp19I CCATGG 1 cut(s) 569
BspACI CCGC 8 cut(s) 19, 39, 45, 192, 199, 202, 231, 385
BspANI GGCC 7 cut(s) 101, 165, 287, 319, 365, 417, 635
BspDI ATCGAT 1 cut(s) 513
BspFNI CGCG 2 cut(s) 115, 117
BspLI GGNNCC 2 cut(s) 102, 175
BspMAI CTGCAG 1 cut(s) 838
BspPI GGATC 1 cut(s) 919
BspT104I TTCGAA 1 cut(s) 612
BsrDI GCAATG 1 cut(s) 898
BsrFI RCCGGY 1 cut(s) 287
BsrI ACTGG 2 cut(s) 445, 734
BssAI RCCGGY 1 cut(s) 287
BssECI CCNNGG 3 cut(s) 253, 569, 684
BssHII GCGCGC 1 cut(s) 115
BssMI GATC 6 cut(s) 313, 367, 470, 510, 661, 911
BssNI GRCGYC 1 cut(s) 900
BssSI CACGAG 1 cut(s) 941
BssT1I CCWWGG 2 cut(s) 569, 684
Bst2BI CACGAG 1 cut(s) 941
Bst4CI ACNGT 2 cut(s) 566, 907
Bst6I CTCTTC 1 cut(s) 161
BstACI GRCGYC 1 cut(s) 900
BstBI TTCGAA 1 cut(s) 612
BstC8I GCNNGC 4 cut(s) 117, 285, 807, 924
BstDEI CTNAG 1 cut(s) 273
BstDSI CCRYGG 1 cut(s) 569
BstF5I GGATG 6 cut(s) 94, 697, 722, 924, 983, 1002
BstFNI CGCG 2 cut(s) 115, 117
BstHHI GCGC 2 cut(s) 117, 119
BstKTI GATC 6 cut(s) 316, 370, 473, 513, 664, 914
BstMAI GTCTC 2 cut(s) 154, 282
BstMBI GATC 6 cut(s) 313, 367, 470, 510, 661, 911
BstMCI CGRYCG 3 cut(s) 366, 370, 473
BstMWI GCNNNNNNNGC 6 cut(s) 79, 88, 191, 331, 854, 1048
BstNSI RCATGY 1 cut(s) 809
BstSCI CCNGG 2 cut(s) 252, 350
BstSFI CTRYAG 1 cut(s) 834
BstUI CGCG 2 cut(s) 115, 117
BstV1I GCAGC 2 cut(s) 389, 959
BstZI CGGCCG 1 cut(s) 363
Bsu15I ATCGAT 1 cut(s) 513
BsuRI GGCC 7 cut(s) 101, 165, 287, 319, 365, 417, 635
BsuTUI ATCGAT 1 cut(s) 513
BtgI CCRYGG 1 cut(s) 569
BtgZI GCGATG 2 cut(s) 172, 1073
BtsCI GGATG 6 cut(s) 94, 697, 722, 924, 983, 1002
BtsIMutI CAGTG 1 cut(s) 741
Cac8I GCNNGC 4 cut(s) 117, 285, 807, 924
CfoI GCGC 2 cut(s) 117, 119
Cfr10I RCCGGY 1 cut(s) 287
Cfr13I GGNCC 4 cut(s) 100, 318, 731, 815
ClaI ATCGAT 1 cut(s) 513
CseI GACGC 1 cut(s) 644
Csp6I GTAC 1 cut(s) 520
CviAII CATG 5 cut(s) 570, 721, 806, 915, 1055
CviQI GTAC 1 cut(s) 520
DdeI CTNAG 1 cut(s) 273
DpnI GATC 6 cut(s) 315, 369, 472, 512, 663, 913
DpnII GATC 6 cut(s) 313, 367, 470, 510, 661, 911
DriI GACNNNNNGTC 1 cut(s) 737
EaeI YGGCCR 1 cut(s) 363
EagI CGGCCG 1 cut(s) 363
Eam1104I CTCTTC 1 cut(s) 161
Eam1105I GACNNNNNGTC 1 cut(s) 737
EarI CTCTTC 1 cut(s) 161
EciI GGCGGA 1 cut(s) 188
EclXI CGGCCG 1 cut(s) 363
Eco130I CCWWGG 2 cut(s) 569, 684
Eco24I GRGCYC 1 cut(s) 336
Eco32I GATATC 1 cut(s) 544
Eco47I GGWCC 2 cut(s) 731, 815
Eco52I CGGCCG 1 cut(s) 363
Eco57I CTGAAG 1 cut(s) 485
EcoRI GAATTC 1 cut(s) 342
EcoRV GATATC 1 cut(s) 544
EcoT14I CCWWGG 2 cut(s) 569, 684
EcoT22I ATGCAT 1 cut(s) 722
EcoT38I GRGCYC 1 cut(s) 336
ErhI CCWWGG 2 cut(s) 569, 684
Esp3I CGTCTC 1 cut(s) 154
FaeI CATG 5 cut(s) 573, 724, 809, 918, 1058
FaqI GGGAC 3 cut(s) 92, 539, 1013
FatI CATG 5 cut(s) 569, 720, 805, 914, 1054
Fnu4HI GCNGC 5 cut(s) 192, 202, 232, 378, 973
FokI GGATG 6 cut(s) 81, 684, 729, 931, 970, 989
FriOI GRGCYC 1 cut(s) 336
Fsp4HI GCNGC 5 cut(s) 192, 202, 232, 378, 973
FspBI CTAG 3 cut(s) 668, 680, 864
GlaI GCGC 2 cut(s) 116, 118
GluI GCNGC 5 cut(s) 192, 202, 232, 378, 973
GsaI CCCAGC 1 cut(s) 1034
HaeIII GGCC 7 cut(s) 101, 165, 287, 319, 365, 417, 635
HapII CCGG 5 cut(s) 98, 171, 253, 288, 351
HgaI GACGC 1 cut(s) 644
HhaI GCGC 2 cut(s) 117, 119
Hin1I GRCGYC 1 cut(s) 900
Hin1II CATG 5 cut(s) 573, 724, 809, 918, 1058
Hin6I GCGC 2 cut(s) 115, 117
HinP1I GCGC 2 cut(s) 115, 117
HindIII AAGCTT 1 cut(s) 323
HinfI GANTC 2 cut(s) 479, 1084
HpaII CCGG 5 cut(s) 98, 171, 253, 288, 351
HphI GGTGA 1 cut(s) 302
Hpy188I TCNGA 7 cut(s) 227, 241, 341, 348, 406, 504, 1083
Hpy188III TCNNGA 5 cut(s) 659, 774, 787, 941, 1094
Hpy99I CGWCG 1 cut(s) 341
HpyAV CCTTC 2 cut(s) 205, 411
HpyCH4III ACNGT 2 cut(s) 566, 907
HpyCH4IV ACGT 2 cut(s) 578, 900
HpyCH4V TGCA 6 cut(s) 377, 720, 836, 975, 992, 1026
HpyF10VI GCNNNNNNNGC 6 cut(s) 79, 88, 191, 331, 854, 1048
HpyF3I CTNAG 1 cut(s) 273
HpySE526I ACGT 2 cut(s) 578, 900
Hsp92I GRCGYC 1 cut(s) 900
Hsp92II CATG 5 cut(s) 573, 724, 809, 918, 1058
HspAI GCGC 2 cut(s) 115, 117
Kzo9I GATC 6 cut(s) 313, 367, 470, 510, 661, 911
LmnI GCTCC 2 cut(s) 78, 1076
Lsp1109I GCAGC 2 cut(s) 389, 959
LweI GCATC 5 cut(s) 218, 706, 707, 857, 909
MaeI CTAG 3 cut(s) 668, 680, 864
MaeII ACGT 2 cut(s) 578, 900
MaeIII GTNAC 4 cut(s) 535, 739, 901, 962
MalI GATC 6 cut(s) 315, 369, 472, 512, 663, 913
MboI GATC 6 cut(s) 313, 367, 470, 510, 661, 911
MboII GAAGA 5 cut(s) 18, 148, 172, 563, 736
MhlI GDGCHC 2 cut(s) 336, 1073
MluCI AATT 1 cut(s) 342
MlyI GAGTC 2 cut(s) 473, 1078
MmeI TCCRAC 5 cut(s) 319, 408, 429, 889, 1106
Mph1103I ATGCAT 1 cut(s) 722
MroXI GAANNNNTTC 1 cut(s) 798
MspI CCGG 5 cut(s) 98, 171, 253, 288, 351
MspR9I CCNGG 2 cut(s) 254, 352
MvnI CGCG 2 cut(s) 115, 117
MwoI GCNNNNNNNGC 6 cut(s) 79, 88, 191, 331, 854, 1048
NciI CCSGG 2 cut(s) 254, 352
NcoI CCATGG 1 cut(s) 569
NdeII GATC 6 cut(s) 313, 367, 470, 510, 661, 911
NlaIII CATG 5 cut(s) 573, 724, 809, 918, 1058
NlaIV GGNNCC 2 cut(s) 102, 175
NmeAIII GCCGAG 2 cut(s) 259, 341
NmuCI GTSAC 3 cut(s) 739, 901, 962
NsiI ATGCAT 1 cut(s) 722
NspI RCATGY 1 cut(s) 809
NspV TTCGAA 1 cut(s) 612
PaeI GCATGC 1 cut(s) 809
PauI GCGCGC 1 cut(s) 115
PcsI WCGNNNNNNNCGW 1 cut(s) 363
PdmI GAANNNNTTC 1 cut(s) 798
PkrI GCNGC 5 cut(s) 193, 203, 233, 379, 974
Ple19I CGATCG 2 cut(s) 370, 473
PleI GAGTC 2 cut(s) 473, 1078
PpsI GAGTC 2 cut(s) 473, 1078
Psp1406I AACGTT 1 cut(s) 578
PspFI CCCAGC 1 cut(s) 1030
PspN4I GGNNCC 2 cut(s) 102, 175
PspPI GGNCC 4 cut(s) 100, 318, 731, 815
PstI CTGCAG 1 cut(s) 838
PteI GCGCGC 1 cut(s) 115
PvuI CGATCG 2 cut(s) 370, 473
RsaI GTAC 1 cut(s) 521
RsaNI GTAC 1 cut(s) 520
SatI GCNGC 5 cut(s) 192, 202, 232, 378, 973
Sau3AI GATC 6 cut(s) 313, 367, 470, 510, 661, 911
Sau96I GGNCC 4 cut(s) 100, 318, 731, 815
SchI GAGTC 2 cut(s) 473, 1078
ScrFI CCNGG 2 cut(s) 254, 352
SduI GDGCHC 2 cut(s) 336, 1073
SfaNI GCATC 5 cut(s) 218, 706, 707, 857, 909
SfcI CTRYAG 1 cut(s) 834
SfuI TTCGAA 1 cut(s) 612
SinI GGWCC 2 cut(s) 731, 815
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
SphI GCATGC 1 cut(s) 809
Sse9I AATT 1 cut(s) 342
SsiI CCGC 8 cut(s) 19, 39, 45, 192, 199, 202, 231, 385
SspI AATATT 1 cut(s) 557
SspMI CTAG 3 cut(s) 668, 680, 864
StyD4I CCNGG 2 cut(s) 252, 350
StyI CCWWGG 2 cut(s) 569, 684
TaaI ACNGT 2 cut(s) 566, 907
TaiI ACGT 2 cut(s) 581, 903
TaqI TCGA 4 cut(s) 473, 513, 612, 664
TasI AATT 1 cut(s) 342
TatI WGTACW 1 cut(s) 519
TauI GCSGC 3 cut(s) 194, 204, 234
TscAI CASTG 1 cut(s) 748
TseFI GTSAC 3 cut(s) 739, 901, 962
TseI GCWGC 2 cut(s) 377, 972
Tsp45I GTSAC 3 cut(s) 739, 901, 962
TspDTI ATGAA 7 cut(s) 148, 564, 737, 770, 807, 944, 1043
TspGWI ACGGA 1 cut(s) 976
TspRI CASTG 1 cut(s) 748
VpaK11BI GGWCC 2 cut(s) 731, 815
XapI RAATTY 1 cut(s) 342
XceI RCATGY 1 cut(s) 809
XmnI GAANNNNTTC 1 cut(s) 798
XspI CTAG 3 cut(s) 668, 680, 864
ZraI GACGTC 1 cut(s) 901
Zsp2I ATGCAT 1 cut(s) 722
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.