Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0012893

Physical Location & Seq

Genomic Coordinates Reverse (-)

3842601 .. 3843158

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGTTTGATGGGTTGACCAATCCCAAGCACCAGAACAAAGTGAGGGATGTTCTAGTTTCTGTTTGTAATGGTGCTGTGGAAACAGTTGTGAGGACATCTCACCAGGTTTTGACGAGTTCCAGTTCGAGTTCAAGCTCGAATTCGCATGCATGTCCAATTGTTGATCAGAGTGAAGGTCCAAGTGGAACTACGGATGAGTGCTTGCAGCGAGAGGTATCTCCAAAGCAGGGGAAGGTGGAGAGTTCGTCGGATGTTATTCATAGTAGTGGGTGGGTTAGGAAGGTTTCATCTACATTGGCTGTGCCGAGCAATAGGAAGTTTGTTCTGGATGTGACGGGGAGGGTGACGTTTGAGACGGTGCGATCTCTCGTTGAGTTTATGTTGTGGACGCTATTAGATGGCTTGAAAAGAAGCCTTAGTGCACTTCATGGGGAGGTTGCAGACAGGGGATTGCAAGTCATCAGATACTTCAGCGGGAAGTCTTCAGTTATAGTTACTGTATGTCTTGCTTTGCATTTATACGTCCTGGGTGGTTCAAGAGTTCTCTTGACTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0030246

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

186

Amino Acids

19.94

Weight (kDa)

8.76

Isoelectric Point (pI)

44.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10150 AT1G59510
fragaria_vesca	FvH4_2g32762
malus_domestica	MD08G1079200.v1.1 MD15G1066400.v1.1
prunus_persica	Prupe.1G420200_v2.0.a1
pyrus_communis	pycom15g06260
rosa_chinensis	RchiOBHm_Chr6g0309911
rosa_laevigata	RLG00000010524
rosa_multiflora	Rmu_co7980562.1_g000001 Rmu_sc0000294.1_g000005
rosa_roxburghii	Rroxscaffold_7G00159050
rosa_rugosa	Rorug06G0375800
rosa_samantha	Rh6AG489700 Rh6BG499100 Rh6CG504000 Rh6DG490200
rosa_wichuraiana	Rw6G042620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	474
AcsI	RAATTY	1 cut(s)	139
AcuI	CTGAAG	2 cut(s)	454, 468
AfiI	CCNNNNNNNGG	1 cut(s)	227
AgsI	TTSAA	3 cut(s)	132, 406, 537
AjnI	CCWGG	2 cut(s)	102, 525
AluBI	AGCT	1 cut(s)	135
AluI	AGCT	1 cut(s)	135
Alw21I	GWGCWC	1 cut(s)	424
Alw26I	GTCTC	1 cut(s)	347
Alw44I	GTGCAC	1 cut(s)	420
ApaLI	GTGCAC	1 cut(s)	420
ApeKI	GCWGC	1 cut(s)	205
ApoI	RAATTY	1 cut(s)	139
AspS9I	GGNCC	1 cut(s)	176
AsuHPI	GGTGA	2 cut(s)	92, 355
AvaII	GGWCC	1 cut(s)	176
BaeGI	GKGCMC	1 cut(s)	424
BbsI	GAAGAC	1 cut(s)	474
Bbv12I	GWGCWC	1 cut(s)	424
BbvI	GCAGC	1 cut(s)	217
BccI	CCATC	2 cut(s)	2, 392
BciT130I	CCWGG	2 cut(s)	104, 527
BclI	TGATCA	1 cut(s)	163
BcoDI	GTCTC	1 cut(s)	347
BfaI	CTAG	1 cut(s)	53
BisI	GCNGC	1 cut(s)	206
BlsI	GCNGC	1 cut(s)	207
Bme1390I	CCNGG	2 cut(s)	104, 527
Bme18I	GGWCC	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	176
BmrFI	CCNGG	2 cut(s)	104, 527
BpiI	GAAGAC	1 cut(s)	474
BplI	GAGNNNNNCTC	2 cut(s)	82, 114
BsaJI	CCNNGG	1 cut(s)	526
BsaXI	ACNNNNNCTCC	2 cut(s)	230, 260
Bsc4I	CCNNNNNNNGG	1 cut(s)	227
Bse1I	ACTGG	1 cut(s)	120
BseBI	CCWGG	2 cut(s)	104, 527
BseDI	CCNNGG	1 cut(s)	526
BseGI	GGATG	4 cut(s)	52, 199, 256, 334
BseLI	CCNNNNNNNGG	1 cut(s)	227
BseNI	ACTGG	1 cut(s)	120
BseSI	GKGCMC	1 cut(s)	424
BseXI	GCAGC	1 cut(s)	217
BsiHKAI	GWGCWC	1 cut(s)	424
BslI	CCNNNNNNNGG	1 cut(s)	227
BsmAI	GTCTC	1 cut(s)	347
BsmBI	CGTCTC	1 cut(s)	347
Bsp1286I	GDGCHC	1 cut(s)	424
Bsp143I	GATC	2 cut(s)	163, 362
BspACI	CCGC	1 cut(s)	474
BsrI	ACTGG	1 cut(s)	120
BssECI	CCNNGG	1 cut(s)	526
BssMI	GATC	2 cut(s)	163, 362
Bst2UI	CCWGG	2 cut(s)	104, 527
Bst4CI	ACNGT	3 cut(s)	85, 358, 499
BstC8I	GCNNGC	2 cut(s)	147, 203
BstDEI	CTNAG	1 cut(s)	416
BstF5I	GGATG	4 cut(s)	52, 199, 256, 334
BstKTI	GATC	2 cut(s)	166, 365
BstMAI	GTCTC	1 cut(s)	347
BstMBI	GATC	2 cut(s)	163, 362
BstNI	CCWGG	2 cut(s)	104, 527
BstNSI	RCATGY	2 cut(s)	149, 153
BstSCI	CCNGG	2 cut(s)	102, 525
BstSLI	GKGCMC	1 cut(s)	424
BstV1I	GCAGC	1 cut(s)	217
BstV2I	GAAGAC	1 cut(s)	474
BtsCI	GGATG	4 cut(s)	52, 199, 256, 334
Cac8I	GCNNGC	2 cut(s)	147, 203
Cfr13I	GGNCC	1 cut(s)	176
CseI	GACGC	1 cut(s)	397
CsiI	ACCWGGT	1 cut(s)	102
CviAII	CATG	3 cut(s)	146, 150, 428
CviJI	RGCY	4 cut(s)	135, 299, 402, 414
CviKI_1	RGCY	4 cut(s)	135, 299, 402, 414
DdeI	CTNAG	1 cut(s)	416
DpnI	GATC	2 cut(s)	165, 364
DpnII	GATC	2 cut(s)	163, 362
Eco47I	GGWCC	1 cut(s)	176
Eco57I	CTGAAG	2 cut(s)	454, 468
EcoRI	GAATTC	1 cut(s)	139
EcoRII	CCWGG	2 cut(s)	102, 525
EcoT22I	ATGCAT	1 cut(s)	151
Esp3I	CGTCTC	1 cut(s)	347
FaeI	CATG	3 cut(s)	149, 153, 431
FaiI	YATR	8 cut(s)	147, 151, 261, 380, 429, 491, 502, 520
FatI	CATG	3 cut(s)	145, 149, 427
FauI	CCCGC	1 cut(s)	467
FbaI	TGATCA	1 cut(s)	163
Fnu4HI	GCNGC	1 cut(s)	206
FokI	GGATG	4 cut(s)	59, 206, 263, 341
Fsp4HI	GCNGC	1 cut(s)	206
FspBI	CTAG	1 cut(s)	53
GluI	GCNGC	1 cut(s)	206
HgaI	GACGC	1 cut(s)	397
Hin1II	CATG	3 cut(s)	149, 153, 431
HincII	GTYRAC	1 cut(s)	15
HindII	GTYRAC	1 cut(s)	15
HphI	GGTGA	2 cut(s)	92, 355
Hpy166II	GTNNAC	3 cut(s)	15, 387, 422
Hpy188I	TCNGA	3 cut(s)	168, 250, 464
Hpy188III	TCNNGA	3 cut(s)	326, 537, 547
Hpy8I	GTNNAC	3 cut(s)	15, 387, 422
Hpy99I	CGWCG	1 cut(s)	250
HpyAV	CCTTC	3 cut(s)	167, 226, 274
HpyCH4III	ACNGT	3 cut(s)	85, 358, 499
HpyCH4IV	ACGT	2 cut(s)	347, 522
HpyCH4V	TGCA	6 cut(s)	149, 205, 422, 440, 454, 514
HpyF3I	CTNAG	1 cut(s)	416
HpySE526I	ACGT	2 cut(s)	347, 522
Hsp92II	CATG	3 cut(s)	149, 153, 431
Ksp22I	TGATCA	1 cut(s)	163
Kzo9I	GATC	2 cut(s)	163, 362
LpnPI	CCDG	9 cut(s)	44, 89, 116, 133, 212, 311, 430, 512, 539
Lsp1109I	GCAGC	1 cut(s)	217
MabI	ACCWGGT	1 cut(s)	102
MaeI	CTAG	1 cut(s)	53
MaeII	ACGT	2 cut(s)	347, 522
MaeIII	GTNAC	3 cut(s)	331, 343, 493
MalI	GATC	2 cut(s)	165, 364
MboI	GATC	2 cut(s)	163, 362
MboII	GAAGA	1 cut(s)	474
MfeI	CAATTG	1 cut(s)	156
MhlI	GDGCHC	1 cut(s)	424
MluCI	AATT	2 cut(s)	139, 156
MmeI	TCCRAC	1 cut(s)	228
MnlI	CCTC	5 cut(s)	36, 84, 205, 333, 427
Mph1103I	ATGCAT	1 cut(s)	151
MseI	TTAA	1 cut(s)	556
MslI	CAYNNNNRTG	1 cut(s)	264
MspA1I	CMGCKG	1 cut(s)	474
MspR9I	CCNGG	2 cut(s)	104, 527
MunI	CAATTG	1 cut(s)	156
MvaI	CCWGG	2 cut(s)	104, 527
NdeII	GATC	2 cut(s)	163, 362
NlaIII	CATG	3 cut(s)	149, 153, 431
NmeAIII	GCCGAG	1 cut(s)	330
NmuCI	GTSAC	2 cut(s)	331, 343
NsiI	ATGCAT	1 cut(s)	151
NspI	RCATGY	2 cut(s)	149, 153
PaeI	GCATGC	1 cut(s)	149
PkrI	GCNGC	1 cut(s)	207
Psp6I	CCWGG	2 cut(s)	102, 525
PspGI	CCWGG	2 cut(s)	102, 525
PspPI	GGNCC	1 cut(s)	176
RseI	CAYNNNNRTG	1 cut(s)	264
SaqAI	TTAA	1 cut(s)	556
SatI	GCNGC	1 cut(s)	206
Sau3AI	GATC	2 cut(s)	163, 362
Sau96I	GGNCC	1 cut(s)	176
ScrFI	CCNGG	2 cut(s)	104, 527
SduI	GDGCHC	1 cut(s)	424
SetI	ASST	9 cut(s)	108, 137, 178, 216, 237, 285, 350, 438, 525
SexAI	ACCWGGT	1 cut(s)	102
SinI	GGWCC	1 cut(s)	176
SmiMI	CAYNNNNRTG	1 cut(s)	264
SphI	GCATGC	1 cut(s)	149
Sse9I	AATT	2 cut(s)	139, 156
SsiI	CCGC	1 cut(s)	474
SspMI	CTAG	1 cut(s)	53
StyD4I	CCNGG	2 cut(s)	102, 525
TaaI	ACNGT	3 cut(s)	85, 358, 499
TaiI	ACGT	2 cut(s)	350, 525
TaqI	TCGA	2 cut(s)	125, 137
TasI	AATT	2 cut(s)	139, 156
Tru1I	TTAA	1 cut(s)	556
Tru9I	TTAA	1 cut(s)	556
TseFI	GTSAC	2 cut(s)	331, 343
TseI	GCWGC	1 cut(s)	205
Tsp45I	GTSAC	2 cut(s)	331, 343
TspDTI	ATGAA	3 cut(s)	248, 276, 416
TspGWI	ACGGA	1 cut(s)	206
VneI	GTGCAC	1 cut(s)	420
VpaK11BI	GGWCC	1 cut(s)	176
XapI	RAATTY	1 cut(s)	139
XceI	RCATGY	2 cut(s)	149, 153
XspI	CTAG	1 cut(s)	53
Zsp2I	ATGCAT	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.