Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006995

Physical Location & Seq

Genomic Coordinates Forward (+)

5094405 .. 5095824

Gene Structure 1420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGACTGAAATGAATGGTAGCTTTTGTTCCAGCAGGCCTATGCGCATCGGTGCCGCAACACCTAGGAAATCATCTGCGTATCAGCAGCAATACTCTTCACAAGGGGGTTATGTTTCAAATGGTACACCAACCCAAGGATTCCAATCTGATGGAGATTCTACAAACACGACAATATTTGTTGGGGGGCTTGATCCTAATGTTACTGATGAAGATCTCAGGCAGCCCTTCTCTCAGTATGGCGAGATAGTTTCTGTTAAAATACCAGTTGGAAAAGGATGTGGATTTGTACAATTTGCTAACAGAAATAACGCCGAGGAGGCATTGCCGAAACTGAATGGCACAGTAATTGGCAAGCAAACAGTCCGCCTTTCATGGGGTCGCAATCCAGCAAATAAGCAGCAGTTCAGATCGGATTTTGGCAGCCAATGGGGAGGTGGCGCCTACTATGGAGGACCTGTTTATGAAGGTTACGGCTATGCTCTACCACCACATCATGACCCAAGCATGTATGCTGCAGCTGCGGCCGCATATGGAGCTTATCCGGTGTATGGCACCCACCAACAACAAGTAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0008143 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010494 GO:0032991 GO:0033554 GO:0034605 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0070717 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

192

Amino Acids

20.53

Weight (kDa)

7.74

Isoelectric Point (pI)

37.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	58 - 121	5.4e-19	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47490 AT1G47490 AT1G47500 AT1G47500
fragaria_vesca	FvH4_2g34870 FvH4_2g34870 FvH4_2g34870 FvH4_2g34870
malus_domestica	MD08G1106300.v1.1 MD15G1087000.v1.1
prunus_persica	Prupe.1G440700_v2.0.a1 Prupe.1G440700_v2.0.a1 Prupe.1G440700_v2.0.a1
pyrus_communis	pycom08g08780 pycom15g08190
rosa_chinensis	RchiOBHm_Chr6g0307171
rosa_laevigata	RLG00000010731
rosa_multiflora	Rmu_sc0000031.1_g000001
rosa_roxburghii	Rroxscaffold_7G00161120
rosa_rugosa	Rorug06G0357100 Rorug06G0357200
rosa_samantha	Rh6AG468000 Rh6BG432500 Rh6CG483200
rosa_wichuraiana	Rw6G040780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	44
AccB1I	GGYRCC	3 cut(s)	50, 437, 551
AciI	CCGC	4 cut(s)	54, 364, 521, 525
AclWI	GGATC	1 cut(s)	185
AcoI	YGGCCR	1 cut(s)	522
AcyI	GRCGYC	1 cut(s)	438
AfaI	GTAC	2 cut(s)	124, 288
AfiI	CCNNNNNNNGG	3 cut(s)	134, 373, 548
AgsI	TTSAA	1 cut(s)	117
AluBI	AGCT	3 cut(s)	21, 518, 536
AluI	AGCT	3 cut(s)	21, 518, 536
AlwI	GGATC	1 cut(s)	185
AoxI	GGCC	2 cut(s)	35, 522
ApeKI	GCWGC	7 cut(s)	85, 220, 397, 420, 512, 515, 518
AspA2I	CCTAGG	1 cut(s)	62
AspLEI	GCGC	2 cut(s)	45, 440
AspS9I	GGNCC	1 cut(s)	452
AvaII	GGWCC	1 cut(s)	452
AvrII	CCTAGG	1 cut(s)	62
BanI	GGYRCC	3 cut(s)	50, 437, 551
BbvI	GCAGC	7 cut(s)	97, 232, 409, 432, 499, 505, 527
BccI	CCATC	1 cut(s)	143
BceAI	ACGGC	1 cut(s)	487
BfaI	CTAG	1 cut(s)	63
BfmI	CTRYAG	1 cut(s)	513
BfoI	RGCGCY	1 cut(s)	441
BglI	GCCNNNNNGGC	1 cut(s)	317
BglII	AGATCT	1 cut(s)	211
BlnI	CCTAGG	1 cut(s)	62
Bme18I	GGWCC	1 cut(s)	452
BmgT120I	GGNCC	1 cut(s)	452
BmiI	GGNNCC	3 cut(s)	52, 439, 553
BmsI	GCATC	1 cut(s)	54
BsaBI	GATNNNNATC	2 cut(s)	142, 210
BsaHI	GRCGYC	1 cut(s)	438
BsaJI	CCNNGG	3 cut(s)	62, 133, 312
BsaWI	WCCGGW	1 cut(s)	541
BsaXI	ACNNNNNCTCC	2 cut(s)	441, 471
Bsc4I	CCNNNNNNNGG	3 cut(s)	134, 373, 548
Bse1I	ACTGG	1 cut(s)	263
Bse3DI	GCAATG	1 cut(s)	320
Bse8I	GATNNNNATC	2 cut(s)	142, 210
BseDI	CCNNGG	3 cut(s)	62, 133, 312
BseGI	GGATG	1 cut(s)	281
BseJI	GATNNNNATC	2 cut(s)	142, 210
BseLI	CCNNNNNNNGG	3 cut(s)	134, 373, 548
BseMI	GCAATG	1 cut(s)	320
BseMII	CTCAG	2 cut(s)	229, 245
BseNI	ACTGG	1 cut(s)	263
BseRI	GAGGAG	1 cut(s)	329
BseX3I	CGGCCG	1 cut(s)	522
BseXI	GCAGC	7 cut(s)	97, 232, 409, 432, 499, 505, 527
Bsh1285I	CGRYCG	1 cut(s)	525
BshFI	GGCC	2 cut(s)	37, 524
BshNI	GGYRCC	3 cut(s)	50, 437, 551
BsiEI	CGRYCG	1 cut(s)	525
BsiSI	CCGG	1 cut(s)	542
BslI	CCNNNNNNNGG	3 cut(s)	134, 373, 548
BsnI	GGCC	2 cut(s)	37, 524
Bsp1407I	TGTACA	1 cut(s)	286
Bsp143I	GATC	3 cut(s)	190, 211, 407
BspACI	CCGC	4 cut(s)	54, 364, 521, 525
BspANI	GGCC	2 cut(s)	37, 524
BspCNI	CTCAG	2 cut(s)	228, 244
BspHI	TCATGA	1 cut(s)	493
BspLI	GGNNCC	3 cut(s)	52, 439, 553
BspMAI	CTGCAG	1 cut(s)	517
BspPI	GGATC	1 cut(s)	185
BspT107I	GGYRCC	3 cut(s)	50, 437, 551
BsrDI	GCAATG	1 cut(s)	320
BsrGI	TGTACA	1 cut(s)	286
BsrI	ACTGG	1 cut(s)	263
BssECI	CCNNGG	3 cut(s)	62, 133, 312
BssMI	GATC	3 cut(s)	190, 211, 407
BssNI	GRCGYC	1 cut(s)	438
BssT1I	CCWWGG	2 cut(s)	62, 133
Bst4CI	ACNGT	2 cut(s)	343, 361
Bst6I	CTCTTC	1 cut(s)	100
BstACI	GRCGYC	1 cut(s)	438
BstAUI	TGTACA	1 cut(s)	286
BstC8I	GCNNGC	2 cut(s)	35, 353
BstDEI	CTNAG	2 cut(s)	215, 231
BstF5I	GGATG	1 cut(s)	281
BstH2I	RGCGCY	1 cut(s)	441
BstHHI	GCGC	2 cut(s)	45, 440
BstKTI	GATC	3 cut(s)	193, 214, 410
BstMBI	GATC	3 cut(s)	190, 211, 407
BstMCI	CGRYCG	1 cut(s)	525
BstMWI	GCNNNNNNNGC	5 cut(s)	317, 518, 521, 524, 533
BstNSI	RCATGY	1 cut(s)	508
BstSFI	CTRYAG	1 cut(s)	513
BstV1I	GCAGC	7 cut(s)	97, 232, 409, 432, 499, 505, 527
BstX2I	RGATCY	1 cut(s)	211
BstXI	CCANNNNNNTGG	1 cut(s)	149
BstYI	RGATCY	1 cut(s)	211
BstZI	CGGCCG	1 cut(s)	522
BsuRI	GGCC	2 cut(s)	37, 524
BtsCI	GGATG	1 cut(s)	281
Cac8I	GCNNGC	2 cut(s)	35, 353
CciI	TCATGA	1 cut(s)	493
CciNI	GCGGCCGC	1 cut(s)	522
CfoI	GCGC	2 cut(s)	45, 440
Cfr13I	GGNCC	1 cut(s)	452
Csp6I	GTAC	2 cut(s)	123, 287
CviAII	CATG	3 cut(s)	372, 494, 505
CviJI	RGCY	9 cut(s)	21, 37, 187, 223, 423, 474, 518, 524, 536
CviKI_1	RGCY	9 cut(s)	21, 37, 187, 223, 423, 474, 518, 524, 536
CviQI	GTAC	2 cut(s)	123, 287
DdeI	CTNAG	2 cut(s)	215, 231
DinI	GGCGCC	1 cut(s)	439
DpnI	GATC	3 cut(s)	192, 213, 409
DpnII	GATC	3 cut(s)	190, 211, 407
EaeI	YGGCCR	1 cut(s)	522
EagI	CGGCCG	1 cut(s)	522
Eam1104I	CTCTTC	1 cut(s)	100
EarI	CTCTTC	1 cut(s)	100
EciI	GGCGGA	1 cut(s)	353
EclXI	CGGCCG	1 cut(s)	522
Eco130I	CCWWGG	2 cut(s)	62, 133
Eco147I	AGGCCT	1 cut(s)	37
Eco47I	GGWCC	1 cut(s)	452
Eco52I	CGGCCG	1 cut(s)	522
EcoO109I	RGGNCCY	1 cut(s)	452
EcoT14I	CCWWGG	2 cut(s)	62, 133
EgeI	GGCGCC	1 cut(s)	439
EheI	GGCGCC	1 cut(s)	439
ErhI	CCWWGG	2 cut(s)	62, 133
FaeI	CATG	3 cut(s)	375, 497, 508
FatI	CATG	3 cut(s)	371, 493, 504
FauNDI	CATATG	1 cut(s)	529
FokI	GGATG	1 cut(s)	288
FspAI	RTGCGCAY	1 cut(s)	44
FspBI	CTAG	1 cut(s)	63
FspI	TGCGCA	1 cut(s)	44
GlaI	GCGC	2 cut(s)	44, 439
HaeII	RGCGCY	1 cut(s)	441
HaeIII	GGCC	2 cut(s)	37, 524
HapII	CCGG	1 cut(s)	542
HhaI	GCGC	2 cut(s)	45, 440
Hin1I	GRCGYC	1 cut(s)	438
Hin1II	CATG	3 cut(s)	375, 497, 508
Hin6I	GCGC	2 cut(s)	43, 438
HinP1I	GCGC	2 cut(s)	43, 438
HinfI	GANTC	2 cut(s)	138, 155
HpaII	CCGG	1 cut(s)	542
Hpy166II	GTNNAC	1 cut(s)	125
Hpy188I	TCNGA	3 cut(s)	148, 407, 412
Hpy188III	TCNNGA	1 cut(s)	494
Hpy8I	GTNNAC	1 cut(s)	125
HpyAV	CCTTC	2 cut(s)	235, 458
HpyCH4III	ACNGT	2 cut(s)	343, 361
HpyCH4V	TGCA	1 cut(s)	515
HpyF10VI	GCNNNNNNNGC	5 cut(s)	317, 518, 521, 524, 533
HpyF3I	CTNAG	2 cut(s)	215, 231
Hsp92I	GRCGYC	1 cut(s)	438
Hsp92II	CATG	3 cut(s)	375, 497, 508
HspAI	GCGC	2 cut(s)	43, 438
KasI	GGCGCC	1 cut(s)	437
Kzo9I	GATC	3 cut(s)	190, 211, 407
LmnI	GCTCC	1 cut(s)	533
LpnPI	CCDG	7 cut(s)	19, 43, 202, 276, 399, 468, 555
Lsp1109I	GCAGC	7 cut(s)	97, 232, 409, 432, 499, 505, 527
LweI	GCATC	1 cut(s)	54
MaeI	CTAG	1 cut(s)	63
MaeIII	GTNAC	2 cut(s)	199, 467
MalI	GATC	3 cut(s)	192, 213, 409
MboI	GATC	3 cut(s)	190, 211, 407
MboII	GAAGA	2 cut(s)	87, 221
MflI	RGATCY	1 cut(s)	211
MluCI	AATT	2 cut(s)	290, 345
Mly113I	GGCGCC	1 cut(s)	438
MmeI	TCCRAC	1 cut(s)	247
MnlI	CCTC	4 cut(s)	307, 310, 425, 443
MseI	TTAA	1 cut(s)	255
MspA1I	CMGCKG	1 cut(s)	518
MspI	CCGG	1 cut(s)	542
MwoI	GCNNNNNNNGC	5 cut(s)	317, 518, 521, 524, 533
NarI	GGCGCC	1 cut(s)	438
NdeI	CATATG	1 cut(s)	529
NdeII	GATC	3 cut(s)	190, 211, 407
NlaIII	CATG	3 cut(s)	375, 497, 508
NlaIV	GGNNCC	3 cut(s)	52, 439, 553
NmeAIII	GCCGAG	1 cut(s)	337
NotI	GCGGCCGC	1 cut(s)	522
NsbI	TGCGCA	1 cut(s)	44
NspI	RCATGY	1 cut(s)	508
PagI	TCATGA	1 cut(s)	493
PceI	AGGCCT	1 cut(s)	37
PfeI	GAWTC	2 cut(s)	138, 155
PluTI	GGCGCC	1 cut(s)	441
PpuMI	RGGWCCY	1 cut(s)	452
Psp5II	RGGWCCY	1 cut(s)	452
PspN4I	GGNNCC	3 cut(s)	52, 439, 553
PspPI	GGNCC	1 cut(s)	452
PspPPI	RGGWCCY	1 cut(s)	452
PsrI	GAACNNNNNNTAC	2 cut(s)	10, 42
PstI	CTGCAG	1 cut(s)	517
PsuI	RGATCY	1 cut(s)	211
PvuII	CAGCTG	1 cut(s)	518
RsaI	GTAC	2 cut(s)	124, 288
RsaNI	GTAC	2 cut(s)	123, 287
SaqAI	TTAA	1 cut(s)	255
Sau3AI	GATC	3 cut(s)	190, 211, 407
Sau96I	GGNCC	1 cut(s)	452
SetI	ASST	7 cut(s)	23, 64, 436, 457, 469, 520, 538
SfaNI	GCATC	1 cut(s)	54
SfcI	CTRYAG	1 cut(s)	513
SfoI	GGCGCC	1 cut(s)	439
SinI	GGWCC	1 cut(s)	452
Sse9I	AATT	2 cut(s)	290, 345
SseBI	AGGCCT	1 cut(s)	37
SsiI	CCGC	4 cut(s)	54, 364, 521, 525
SspDI	GGCGCC	1 cut(s)	437
SspI	AATATT	1 cut(s)	174
SspMI	CTAG	1 cut(s)	63
StuI	AGGCCT	1 cut(s)	37
StyI	CCWWGG	2 cut(s)	62, 133
TaaI	ACNGT	2 cut(s)	343, 361
TasI	AATT	2 cut(s)	290, 345
TatI	WGTACW	1 cut(s)	286
TauI	GCSGC	3 cut(s)	56, 524, 527
TfiI	GAWTC	2 cut(s)	138, 155
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TseI	GCWGC	7 cut(s)	85, 220, 397, 420, 512, 515, 518
TspDTI	ATGAA	4 cut(s)	26, 222, 360, 477
VpaK11BI	GGWCC	1 cut(s)	452
XceI	RCATGY	1 cut(s)	508
XcmI	CCANNNNNNNNNTGG	1 cut(s)	431
XmaJI	CCTAGG	1 cut(s)	62
XspI	CTAG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.